RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 TOPBP1Q92547 1522 aa26.39■■□□□ 1.82
UPF1-210ENST00000600689 DNMBPQ6XZF7 1577 aa26.38■■□□□ 1.81
UPF1-210ENST00000600689 POLA1P09884 1462 aaPredicted RBP26.38■■□□□ 1.81
UPF1-210ENST00000600689 FKBP8Q14318 412 aa26.37■■□□□ 1.81
UPF1-210ENST00000600689 ANP32EQ9BTT0 268 aa26.36■■□□□ 1.81
UPF1-210ENST00000600689 HIRIP3Q9BW71 556 aaPredicted RBP26.35■■□□□ 1.81
UPF1-210ENST00000600689 DDX10Q13206 875 aaKnown RBP26.33■■□□□ 1.8
UPF1-210ENST00000600689 P3H3Q8IVL6 736 aa26.28■■□□□ 1.8
UPF1-210ENST00000600689 CLSPNQ9HAW4 1339 aa26.27■■□□□ 1.8
UPF1-210ENST00000600689 ABCA10Q8WWZ4 1543 aa26.27■■□□□ 1.8
UPF1-210ENST00000600689 URB2Q14146 1524 aaKnown RBP26.27■■□□□ 1.8
UPF1-210ENST00000600689 LAMC3Q9Y6N6 1575 aa26.26■■□□□ 1.79
UPF1-210ENST00000600689 TRIM52Q96A61 297 aa26.23■■□□□ 1.79
UPF1-210ENST00000600689 SIN3AQ96ST3 1273 aa26.18■■□□□ 1.78
UPF1-210ENST00000600689 TDRD9Q8NDG6 1382 aaKnown RBP26.17■■□□□ 1.78
UPF1-210ENST00000600689 ATP1B4Q9UN42 357 aaPredicted RBP26.13■■□□□ 1.77
UPF1-210ENST00000600689 PDS5BQ9NTI5 1447 aa26.13■■□□□ 1.77
UPF1-210ENST00000600689 BCL11AQ9H165 835 aa26.12■■□□□ 1.77
UPF1-210ENST00000600689 KIF21AQ7Z4S6 1674 aa26.11■■□□□ 1.77
UPF1-210ENST00000600689 NEFLP07196 543 aa26.1■■□□□ 1.77
UPF1-210ENST00000600689 RRBP1Q9P2E9 1410 aaKnown RBP26.1■■□□□ 1.77
UPF1-210ENST00000600689 FAM50AQ14320 339 aaKnown RBP26.08■■□□□ 1.77
UPF1-210ENST00000600689 FHOD3Q2V2M9 1422 aa26.08■■□□□ 1.77
UPF1-210ENST00000600689 WDR97A6NE52 1622 aa26.06■■□□□ 1.76
UPF1-210ENST00000600689 TIAM1Q13009 1591 aa26.06■■□□□ 1.76
UPF1-210ENST00000600689 CCNB3Q8WWL7 1395 aa26.06■■□□□ 1.76
UPF1-210ENST00000600689 CUL7Q14999 1698 aa26.04■■□□□ 1.76
UPF1-210ENST00000600689 RAB3GAP2Q9H2M9 1393 aa26.03■■□□□ 1.76
UPF1-210ENST00000600689 RBM19Q9Y4C8 960 aaKnown RBP26.03■■□□□ 1.76
UPF1-210ENST00000600689 PCF11O94913 1555 aaKnown RBP26.01■■□□□ 1.75
UPF1-210ENST00000600689 GAPVD1Q14C86 1478 aa26■■□□□ 1.75
UPF1-210ENST00000600689 IRX6P78412 446 aaPredicted RBP25.98■■□□□ 1.75
UPF1-210ENST00000600689 ABCA5Q8WWZ7 1642 aa25.98■■□□□ 1.75
UPF1-210ENST00000600689 LRRC9Q6ZRR7 1453 aa25.98■■□□□ 1.75
UPF1-210ENST00000600689 FHAD1B1AJZ9 1412 aa25.98■■□□□ 1.75
UPF1-210ENST00000600689 CTTNBP2Q8WZ74 1663 aa25.96■■□□□ 1.75
UPF1-210ENST00000600689 PHLDB1Q86UU1 1377 aa25.94■■□□□ 1.74
UPF1-210ENST00000600689 MAP3K1Q13233 1512 aa25.93■■□□□ 1.74
UPF1-210ENST00000600689 ANP32CO43423 234 aa25.89■■□□□ 1.73
UPF1-210ENST00000600689 TARBP1Q13395 1621 aaKnown RBP25.88■■□□□ 1.73
UPF1-210ENST00000600689 EFCAB5A4FU69 1503 aa25.87■■□□□ 1.73
UPF1-210ENST00000600689 CFAP43Q8NDM7 1665 aa25.86■■□□□ 1.73
UPF1-210ENST00000600689 AQRO60306 1485 aaKnown RBP eCLIP25.83■■□□□ 1.734e-7■■■■■ 30.6
UPF1-210ENST00000600689 CASKIN1Q8WXD9 1431 aa25.82■■□□□ 1.72
UPF1-210ENST00000600689 FYCO1Q9BQS8 1478 aa25.82■■□□□ 1.72
UPF1-210ENST00000600689 PPP1R15AO75807 674 aaPredicted RBP25.8■■□□□ 1.72
UPF1-210ENST00000600689 MAPKBP1O60336 1514 aa25.79■■□□□ 1.72
UPF1-210ENST00000600689 FMN1Q68DA7 1419 aa25.76■■□□□ 1.71
UPF1-210ENST00000600689 SETD5Q9C0A6 1442 aa25.75■■□□□ 1.71
UPF1-210ENST00000600689 SNAPC4Q5SXM2 1469 aa25.75■■□□□ 1.71
UPF1-210ENST00000600689 MSH5O43196 834 aa25.75■■□□□ 1.71
UPF1-210ENST00000600689 MRC2Q9UBG0 1479 aa25.75■■□□□ 1.71
UPF1-210ENST00000600689 HNRNPUQ00839 825 aaKnown RBP eCLIP25.73■■□□□ 1.71
UPF1-210ENST00000600689 SAMD9Q5K651 1589 aa25.73■■□□□ 1.71
UPF1-210ENST00000600689 PBRM1Q86U86 1689 aa25.71■■□□□ 1.71
UPF1-210ENST00000600689 ERICH6Q7L0X2 663 aa25.71■■□□□ 1.71
UPF1-210ENST00000600689 LRRIQ1Q96JM4 1722 aa25.68■■□□□ 1.7
UPF1-210ENST00000600689 ZNF608Q9ULD9 1512 aaPredicted RBP25.68■■□□□ 1.7
UPF1-210ENST00000600689 MTUS2Q5JR59 1369 aa25.65■■□□□ 1.7
UPF1-210ENST00000600689 GRIN2BQ13224 1484 aa25.61■■□□□ 1.69
UPF1-210ENST00000600689 ADAMTS12P58397 1594 aa25.6■■□□□ 1.69
UPF1-210ENST00000600689 CCER2I3L3R5 266 aa25.59■■□□□ 1.69
UPF1-210ENST00000600689 CNGB1Q14028 1251 aaPredicted RBP25.59■■□□□ 1.69
UPF1-210ENST00000600689 ARID3CA6NKF2 412 aa25.58■■□□□ 1.69
UPF1-210ENST00000600689 CDK11AQ9UQ88 783 aaPredicted RBP25.58■■□□□ 1.69
UPF1-210ENST00000600689 TONSLQ96HA7 1378 aa25.58■■□□□ 1.68
UPF1-210ENST00000600689 FGD6Q6ZV73 1430 aa25.56■■□□□ 1.68
UPF1-210ENST00000600689 IQGAP2Q13576 1575 aa25.54■■□□□ 1.68
UPF1-210ENST00000600689 WDR62O43379 1518 aa25.53■■□□□ 1.68
UPF1-210ENST00000600689 IFT140Q96RY7 1462 aa25.53■■□□□ 1.68
UPF1-210ENST00000600689 NCOA2Q15596 1464 aa25.51■■□□□ 1.67
UPF1-210ENST00000600689 ERCC6Q03468 1493 aa25.5■■□□□ 1.67
UPF1-210ENST00000600689 MAGI3Q5TCQ9 1506 aa25.5■■□□□ 1.67
UPF1-210ENST00000600689 PTPRKQ15262 1439 aa25.48■■□□□ 1.67
UPF1-210ENST00000600689 SENP3-EIF4A1A0A087X0R7 540 aa25.47■■□□□ 1.67
UPF1-210ENST00000600689 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.45■■□□□ 1.66
UPF1-210ENST00000600689 FAM9BQ8IZU0 186 aa25.45■■□□□ 1.66
UPF1-210ENST00000600689 B4GALNT3Q6L9W6 998 aa25.43■■□□□ 1.66
UPF1-210ENST00000600689 MYOM3Q5VTT5 1437 aa25.43■■□□□ 1.66
UPF1-210ENST00000600689 THOC2Q8NI27 1593 aaKnown RBP25.43■■□□□ 1.66
UPF1-210ENST00000600689 CCDC184Q52MB2 194 aa25.42■■□□□ 1.66
UPF1-210ENST00000600689 EIF4G3O43432 1585 aaKnown RBP25.42■■□□□ 1.66
UPF1-210ENST00000600689 SUPT6HQ7KZ85 1726 aaKnown RBP25.42■■□□□ 1.66
UPF1-210ENST00000600689 CDK13Q14004 1512 aaKnown RBP25.41■■□□□ 1.66
UPF1-210ENST00000600689 EHBP1L1Q8N3D4 1523 aa25.41■■□□□ 1.66
UPF1-210ENST00000600689 EPRSP07814 1512 aaKnown RBP25.38■■□□□ 1.65
UPF1-210ENST00000600689 HECW1Q76N89 1606 aa25.37■■□□□ 1.65
UPF1-210ENST00000600689 CHIC2Q9UKJ5 165 aa25.37■■□□□ 1.65
UPF1-210ENST00000600689 TIMELESSQ9UNS1 1208 aa25.36■■□□□ 1.65
UPF1-210ENST00000600689 FBLN2P98095 1184 aa25.36■■□□□ 1.65
UPF1-210ENST00000600689 CCDC18Q5T9S5 1454 aa25.36■■□□□ 1.65
UPF1-210ENST00000600689 UGGT2Q9NYU1 1516 aa25.35■■□□□ 1.65
UPF1-210ENST00000600689 NBR1Q14596 966 aa25.34■■□□□ 1.65
UPF1-210ENST00000600689 GRIN2AQ12879 1464 aa25.34■■□□□ 1.65
UPF1-210ENST00000600689 PTPN23Q9H3S7 1636 aa25.32■■□□□ 1.64
UPF1-210ENST00000600689 DISP1Q96F81 1524 aa25.32■■□□□ 1.64
UPF1-210ENST00000600689 KIAA0586Q9BVV6 1533 aa25.32■■□□□ 1.64
UPF1-210ENST00000600689 RRP7BPQ9NSQ0 103 aa25.32■■□□□ 1.64
UPF1-210ENST00000600689 HSPA5P11021 654 aaKnown RBP25.31■■□□□ 1.64
UPF1-210ENST00000600689 ARHGEF11O15085 1522 aa25.31■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms