RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 NEFLP07196 543 aa21.64■■□□□ 1.05
UPF1-204ENST00000596842 ERICH6Q7L0X2 663 aa21.64■■□□□ 1.05
UPF1-204ENST00000596842 IGF1RP08069 1367 aa21.62■■□□□ 1.05
UPF1-204ENST00000596842 PHLDB1Q86UU1 1377 aa21.61■■□□□ 1.05
UPF1-204ENST00000596842 SETD5Q9C0A6 1442 aa21.61■■□□□ 1.05
UPF1-204ENST00000596842 BIVM-ERCC5R4GMW8 1640 aa21.6■■□□□ 1.05
UPF1-204ENST00000596842 ANP32CO43423 234 aa21.59■■□□□ 1.05
UPF1-204ENST00000596842 ARID3CA6NKF2 412 aa21.56■■□□□ 1.04
UPF1-204ENST00000596842 PRKCSHP14314 528 aaPredicted RBP21.54■■□□□ 1.04
UPF1-204ENST00000596842 ANP32EQ9BTT0 268 aa21.53■■□□□ 1.04
UPF1-204ENST00000596842 CNGB1Q14028 1251 aaPredicted RBP21.53■■□□□ 1.04
UPF1-204ENST00000596842 NCAPD3P42695 1498 aa21.53■■□□□ 1.04
UPF1-204ENST00000596842 FHOD3Q2V2M9 1422 aa21.52■■□□□ 1.04
UPF1-204ENST00000596842 IRX6P78412 446 aaPredicted RBP21.51■■□□□ 1.03
UPF1-204ENST00000596842 CFTRP13569 1480 aa21.5■■□□□ 1.03
UPF1-204ENST00000596842 WDR97A6NE52 1622 aa21.5■■□□□ 1.03
UPF1-204ENST00000596842 CHIC2Q9UKJ5 165 aa21.49■■□□□ 1.03
UPF1-204ENST00000596842 TONSLQ96HA7 1378 aa21.48■■□□□ 1.03
UPF1-204ENST00000596842 MAPKBP1O60336 1514 aa21.47■■□□□ 1.03
UPF1-204ENST00000596842 LRRC9Q6ZRR7 1453 aa21.46■■□□□ 1.03
UPF1-204ENST00000596842 PPP1R15AO75807 674 aaPredicted RBP21.45■■□□□ 1.02
UPF1-204ENST00000596842 FGD5Q6ZNL6 1462 aa21.45■■□□□ 1.02
UPF1-204ENST00000596842 TIAM1Q13009 1591 aa21.42■■□□□ 1.02
UPF1-204ENST00000596842 RRP7BPQ9NSQ0 103 aa21.41■■□□□ 1.02
UPF1-204ENST00000596842 HNRNPUQ00839 825 aaKnown RBP eCLIP21.41■■□□□ 1.02
UPF1-204ENST00000596842 MTUS2Q5JR59 1369 aa21.4■■□□□ 1.02
UPF1-204ENST00000596842 CADPSQ9ULU8 1353 aa21.4■■□□□ 1.02
UPF1-204ENST00000596842 FHAD1B1AJZ9 1412 aa21.39■■□□□ 1.01
UPF1-204ENST00000596842 RAD54L2Q9Y4B4 1467 aa21.38■■□□□ 1.01
UPF1-204ENST00000596842 HMGXB3Q12766 1538 aa21.37■■□□□ 1.01
UPF1-204ENST00000596842 POLR3GLQ9BT43 218 aa21.3■■□□□ 1
UPF1-204ENST00000596842 FOXD1Q16676 465 aa21.28■■□□□ 1
UPF1-204ENST00000596842 RBM19Q9Y4C8 960 aaKnown RBP21.28■■□□□ 1
UPF1-204ENST00000596842 PCF11O94913 1555 aaKnown RBP21.28■■□□□ 1
UPF1-204ENST00000596842 SENP3-EIF4A1A0A087X0R7 540 aa21.27■■□□□ 1
UPF1-204ENST00000596842 TDRD9Q8NDG6 1382 aaKnown RBP21.26■□□□□ 0.99
UPF1-204ENST00000596842 FAM9BQ8IZU0 186 aa21.24■□□□□ 0.99
UPF1-204ENST00000596842 CCER2I3L3R5 266 aa21.23■□□□□ 0.99
UPF1-204ENST00000596842 FANCD2Q9BXW9 1451 aa21.23■□□□□ 0.99
UPF1-204ENST00000596842 TIMELESSQ9UNS1 1208 aa21.22■□□□□ 0.99
UPF1-204ENST00000596842 CCDC18Q5T9S5 1454 aa21.19■□□□□ 0.98
UPF1-204ENST00000596842 HSPA5P11021 654 aaKnown RBP21.18■□□□□ 0.98
UPF1-204ENST00000596842 FGD6Q6ZV73 1430 aa21.18■□□□□ 0.98
UPF1-204ENST00000596842 NESP48681 1621 aa21.18■□□□□ 0.98
UPF1-204ENST00000596842 ZNF326Q5BKZ1 582 aaKnown RBP21.16■□□□□ 0.98
UPF1-204ENST00000596842 PTPRKQ15262 1439 aa21.15■□□□□ 0.98
UPF1-204ENST00000596842 MAP3K1Q13233 1512 aa21.12■□□□□ 0.97
UPF1-204ENST00000596842 CCDC184Q52MB2 194 aa21.11■□□□□ 0.97
UPF1-204ENST00000596842 CASKIN1Q8WXD9 1431 aa21.11■□□□□ 0.97
UPF1-204ENST00000596842 CDK11AQ9UQ88 783 aaPredicted RBP21.11■□□□□ 0.97
UPF1-204ENST00000596842 EIF4G2P78344 907 aaKnown RBP eCLIP21.1■□□□□ 0.97
UPF1-204ENST00000596842 FMN1Q68DA7 1419 aa21.09■□□□□ 0.97
UPF1-204ENST00000596842 POLA1P09884 1462 aaPredicted RBP21.09■□□□□ 0.97
UPF1-204ENST00000596842 FYCO1Q9BQS8 1478 aa21.08■□□□□ 0.97
UPF1-204ENST00000596842 MRS2Q9HD23 443 aa21.08■□□□□ 0.97
UPF1-204ENST00000596842 WASHC2AQ641Q2 1341 aa21.07■□□□□ 0.96
UPF1-204ENST00000596842 AQRO60306 1485 aaKnown RBP eCLIP21.06■□□□□ 0.962e-6■■■■■ 26.8
UPF1-204ENST00000596842 L3MBTL2Q969R5 705 aa21.05■□□□□ 0.96
UPF1-204ENST00000596842 UACAQ9BZF9 1416 aa21.05■□□□□ 0.96
UPF1-204ENST00000596842 NCOA2Q15596 1464 aa21.03■□□□□ 0.96
UPF1-204ENST00000596842 DNAJC5BQ9UF47 199 aa21.03■□□□□ 0.96
UPF1-204ENST00000596842 B4GALNT3Q6L9W6 998 aa21.02■□□□□ 0.96
UPF1-204ENST00000596842 TOPBP1Q92547 1522 aa21.02■□□□□ 0.96
UPF1-204ENST00000596842 NAIPQ13075 1403 aa21.01■□□□□ 0.95
UPF1-204ENST00000596842 MPHOSPH9Q99550 1183 aa21.01■□□□□ 0.95
UPF1-204ENST00000596842 ZNF777Q9ULD5 760 aaPredicted RBP21■□□□□ 0.95
UPF1-204ENST00000596842 HFM1A2PYH4 1435 aa21■□□□□ 0.95
UPF1-204ENST00000596842 CFAP43Q8NDM7 1665 aa20.99■□□□□ 0.95
UPF1-204ENST00000596842 C11orf95C9JLR9 678 aaPredicted RBP20.99■□□□□ 0.95
UPF1-204ENST00000596842 MYOM3Q5VTT5 1437 aa20.98■□□□□ 0.95
UPF1-204ENST00000596842 CC2D2AQ9P2K1 1620 aa20.98■□□□□ 0.95
UPF1-204ENST00000596842 SLC4A1APQ9BWU0 796 aaKnown RBP20.97■□□□□ 0.95
UPF1-204ENST00000596842 CCDC136Q96JN2 1154 aa20.95■□□□□ 0.94
UPF1-204ENST00000596842 ABCA10Q8WWZ4 1543 aa20.95■□□□□ 0.94
UPF1-204ENST00000596842 MSH5O43196 834 aa20.94■□□□□ 0.94
UPF1-204ENST00000596842 EIF5BO60841 1220 aaKnown RBP20.92■□□□□ 0.94
UPF1-204ENST00000596842 ZNF644Q9H582 1327 aaPredicted RBP20.92■□□□□ 0.94
UPF1-204ENST00000596842 EFCAB5A4FU69 1503 aa20.92■□□□□ 0.94
UPF1-204ENST00000596842 PTPN23Q9H3S7 1636 aa20.92■□□□□ 0.94
UPF1-204ENST00000596842 RTN4Q9NQC3 1192 aaKnown RBP20.91■□□□□ 0.94
UPF1-204ENST00000596842 DNMBPQ6XZF7 1577 aa20.91■□□□□ 0.94
UPF1-204ENST00000596842 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.91■□□□□ 0.94
UPF1-204ENST00000596842 PRKRIP1Q9H875 184 aaPredicted RBP20.89■□□□□ 0.94
UPF1-204ENST00000596842 ANO8Q9HCE9 1232 aaPredicted RBP20.89■□□□□ 0.93
UPF1-204ENST00000596842 GAPVD1Q14C86 1478 aa20.89■□□□□ 0.93
UPF1-204ENST00000596842 NBPF8Q3BBV2 869 aa20.89■□□□□ 0.93
UPF1-204ENST00000596842 SNAPC4Q5SXM2 1469 aa20.88■□□□□ 0.93
UPF1-204ENST00000596842 PRDM2Q13029 1718 aa20.87■□□□□ 0.93
UPF1-204ENST00000596842 NBR1Q14596 966 aa20.86■□□□□ 0.93
UPF1-204ENST00000596842 SALL2Q9Y467 1007 aaPredicted RBP20.86■□□□□ 0.93
UPF1-204ENST00000596842 FBLN2P98095 1184 aa20.85■□□□□ 0.93
UPF1-204ENST00000596842 PPP4R2Q9NY27 417 aa20.84■□□□□ 0.93
UPF1-204ENST00000596842 URB2Q14146 1524 aaKnown RBP20.82■□□□□ 0.92
UPF1-204ENST00000596842 KDM2AQ9Y2K7 1162 aa20.81■□□□□ 0.92
UPF1-204ENST00000596842 CDK13Q14004 1512 aaKnown RBP20.79■□□□□ 0.92
UPF1-204ENST00000596842 CCDC7Q96M83 1385 aa20.79■□□□□ 0.92
UPF1-204ENST00000596842 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.79■□□□□ 0.92
UPF1-204ENST00000596842 CTTNBP2Q8WZ74 1663 aa20.78■□□□□ 0.92
UPF1-204ENST00000596842 KIF7Q2M1P5 1343 aa20.78■□□□□ 0.92
UPF1-204ENST00000596842 CNTLNQ9NXG0 1405 aa20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms