RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 RAD54L2Q9Y4B4 1467 aa9.95□□□□□ -0.82
LIG3-206ENST00000586058 GAPVD1Q14C86 1478 aa9.92□□□□□ -0.82
LIG3-206ENST00000586058 ADAMTS12P58397 1594 aa9.9□□□□□ -0.82
LIG3-206ENST00000586058 RAPGEF2Q9Y4G8 1499 aa9.9□□□□□ -0.83
LIG3-206ENST00000586058 UBTFP17480 764 aaKnown RBP9.89□□□□□ -0.83
LIG3-206ENST00000586058 EHMT2Q96KQ7 1210 aa9.89□□□□□ -0.83
LIG3-206ENST00000586058 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.89□□□□□ -0.83
LIG3-206ENST00000586058 PRXQ9BXM0 1461 aa9.89□□□□□ -0.83
LIG3-206ENST00000586058 TNIKQ9UKE5 1360 aa9.88□□□□□ -0.83
LIG3-206ENST00000586058 GRIN2BQ13224 1484 aa9.87□□□□□ -0.83
LIG3-206ENST00000586058 LOC105371045A0A1W2PR82 267 aa9.87□□□□□ -0.83
LIG3-206ENST00000586058 CEP162Q5TB80 1403 aa9.85□□□□□ -0.83
LIG3-206ENST00000586058 CARMIL1Q5VZK9 1371 aa9.84□□□□□ -0.83
LIG3-206ENST00000586058 TDRD9Q8NDG6 1382 aaKnown RBP9.83□□□□□ -0.84
LIG3-206ENST00000586058 MAGI1Q96QZ7 1491 aaPredicted RBP9.83□□□□□ -0.84
LIG3-206ENST00000586058 CHD1O14646 1710 aa9.82□□□□□ -0.84
LIG3-206ENST00000586058 IGF1RP08069 1367 aa9.81□□□□□ -0.84
LIG3-206ENST00000586058 EFCAB5A4FU69 1503 aa9.81□□□□□ -0.84
LIG3-206ENST00000586058 ZNF608Q9ULD9 1512 aaPredicted RBP9.81□□□□□ -0.84
LIG3-206ENST00000586058 FHAD1B1AJZ9 1412 aa9.81□□□□□ -0.84
LIG3-206ENST00000586058 SNAPC4Q5SXM2 1469 aa9.8□□□□□ -0.84
LIG3-206ENST00000586058 CLIP1P30622 1438 aa9.8□□□□□ -0.84
LIG3-206ENST00000586058 AQRO60306 1485 aaKnown RBP eCLIP9.79□□□□□ -0.84
LIG3-206ENST00000586058 IQGAP2Q13576 1575 aa9.79□□□□□ -0.84
LIG3-206ENST00000586058 KCNA4P22459 653 aa9.78□□□□□ -0.84
LIG3-206ENST00000586058 SYNJ2O15056 1496 aa9.77□□□□□ -0.85
LIG3-206ENST00000586058 GRIN2AQ12879 1464 aa9.75□□□□□ -0.85
LIG3-206ENST00000586058 SAMD9Q5K651 1589 aa9.73□□□□□ -0.85
LIG3-206ENST00000586058 U3KPZ7 1027 aaPredicted RBP9.73□□□□□ -0.85
LIG3-206ENST00000586058 VPS8Q8N3P4 1428 aa9.72□□□□□ -0.85
LIG3-206ENST00000586058 CFAP43Q8NDM7 1665 aa9.71□□□□□ -0.86
LIG3-206ENST00000586058 RANGAP1P46060 587 aaPredicted RBP9.7□□□□□ -0.86
LIG3-206ENST00000586058 CEP170Q5SW79 1584 aa9.7□□□□□ -0.86
LIG3-206ENST00000586058 ARAP1Q96P48 1450 aa9.68□□□□□ -0.86
LIG3-206ENST00000586058 ARHGAP35Q9NRY4 1499 aa9.68□□□□□ -0.86
LIG3-206ENST00000586058 APLP2Q06481 763 aa9.68□□□□□ -0.86
LIG3-206ENST00000586058 CHMP7Q8WUX9 453 aaPredicted RBP9.68□□□□□ -0.86
LIG3-206ENST00000586058 KIAA0556O60303 1618 aa9.67□□□□□ -0.86
LIG3-206ENST00000586058 PCF11O94913 1555 aaKnown RBP9.67□□□□□ -0.86
LIG3-206ENST00000586058 HECW1Q76N89 1606 aa9.67□□□□□ -0.86
LIG3-206ENST00000586058 KIAA0586Q9BVV6 1533 aa9.66□□□□□ -0.86
LIG3-206ENST00000586058 UGGT2Q9NYU1 1516 aa9.66□□□□□ -0.86
LIG3-206ENST00000586058 FMN1Q68DA7 1419 aa9.65□□□□□ -0.86
LIG3-206ENST00000586058 FBLN2P98095 1184 aa9.65□□□□□ -0.86
LIG3-206ENST00000586058 FYCO1Q9BQS8 1478 aa9.64□□□□□ -0.87
LIG3-206ENST00000586058 NUP160Q12769 1436 aa9.63□□□□□ -0.87
LIG3-206ENST00000586058 CARMIL2Q6F5E8 1435 aa9.62□□□□□ -0.87
LIG3-206ENST00000586058 SHROOM2Q13796 1616 aa9.61□□□□□ -0.87
LIG3-206ENST00000586058 FHOD3Q2V2M9 1422 aa9.61□□□□□ -0.87
LIG3-206ENST00000586058 TIAM1Q13009 1591 aa9.61□□□□□ -0.87
LIG3-206ENST00000586058 RAPGEF6Q8TEU7 1601 aa9.6□□□□□ -0.87
LIG3-206ENST00000586058 LRRIQ1Q96JM4 1722 aa9.6□□□□□ -0.87
LIG3-206ENST00000586058 SLC4A2P04920 1241 aa9.6□□□□□ -0.87
LIG3-206ENST00000586058 SPINK5Q9NQ38 1064 aaPredicted RBP9.6□□□□□ -0.87
LIG3-206ENST00000586058 MAP3K1Q13233 1512 aa9.59□□□□□ -0.87
LIG3-206ENST00000586058 CCDC18Q5T9S5 1454 aa9.59□□□□□ -0.87
LIG3-206ENST00000586058 CLASP1Q7Z460 1538 aa9.57□□□□□ -0.88
LIG3-206ENST00000586058 SUPT6HQ7KZ85 1726 aaKnown RBP9.57□□□□□ -0.88
LIG3-206ENST00000586058 CASKIN1Q8WXD9 1431 aa9.56□□□□□ -0.88
LIG3-206ENST00000586058 CAPN15O75808 1086 aa9.55□□□□□ -0.88
LIG3-206ENST00000586058 EHBP1L1Q8N3D4 1523 aa9.55□□□□□ -0.88
LIG3-206ENST00000586058 DISP1Q96F81 1524 aa9.55□□□□□ -0.88
LIG3-206ENST00000586058 DSG3P32926 999 aa9.54□□□□□ -0.88
LIG3-206ENST00000586058 P3H3Q8IVL6 736 aa9.54□□□□□ -0.88
LIG3-206ENST00000586058 TRIM26Q12899 539 aaPredicted RBP9.53□□□□□ -0.88
LIG3-206ENST00000586058 ITSN2Q9NZM3 1697 aa9.52□□□□□ -0.89
LIG3-206ENST00000586058 ATP1B4Q9UN42 357 aaPredicted RBP9.52□□□□□ -0.89
LIG3-206ENST00000586058 PRG4Q92954 1404 aaPredicted RBP9.5□□□□□ -0.89
LIG3-206ENST00000586058 LRRC9Q6ZRR7 1453 aa9.49□□□□□ -0.89
LIG3-206ENST00000586058 EPRSP07814 1512 aaKnown RBP9.48□□□□□ -0.89
LIG3-206ENST00000586058 JPH4Q96JJ6 628 aa9.48□□□□□ -0.89
LIG3-206ENST00000586058 TTBK1Q5TCY1 1321 aaPredicted RBP9.48□□□□□ -0.89
LIG3-206ENST00000586058 ADCY10Q96PN6 1610 aa9.48□□□□□ -0.89
LIG3-206ENST00000586058 MTUS2Q5JR59 1369 aa9.48□□□□□ -0.89
LIG3-206ENST00000586058 ABCA8O94911 1581 aa9.47□□□□□ -0.89
LIG3-206ENST00000586058 KIF14Q15058 1648 aa9.47□□□□□ -0.89
LIG3-206ENST00000586058 PPARGC1BQ86YN6 1023 aaKnown RBP9.46□□□□□ -0.9
LIG3-206ENST00000586058 PCGF6Q9BYE7 350 aa9.45□□□□□ -0.9
LIG3-206ENST00000586058 CDK13Q14004 1512 aaKnown RBP9.45□□□□□ -0.9
LIG3-206ENST00000586058 ABCC2Q92887 1545 aa9.44□□□□□ -0.9
LIG3-206ENST00000586058 ZCCHC11Q5TAX3 1644 aaKnown RBP9.43□□□□□ -0.9
LIG3-206ENST00000586058 NUP153P49790 1475 aaKnown RBP9.43□□□□□ -0.9
LIG3-206ENST00000586058 PTPRGP23470 1445 aa9.43□□□□□ -0.9
LIG3-206ENST00000586058 CDK11AQ9UQ88 783 aaPredicted RBP9.43□□□□□ -0.9
LIG3-206ENST00000586058 MYO5CQ9NQX4 1742 aa9.42□□□□□ -0.9
LIG3-206ENST00000586058 ERCC6L2Q5T890 1561 aa9.42□□□□□ -0.9
LIG3-206ENST00000586058 PLB1Q6P1J6 1458 aa9.42□□□□□ -0.9
LIG3-206ENST00000586058 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.42□□□□□ -0.9
LIG3-206ENST00000586058 HNRNPUL2Q1KMD3 747 aaKnown RBP9.42□□□□□ -0.9
LIG3-206ENST00000586058 OSCARQ8IYS5 282 aa9.41□□□□□ -0.9
LIG3-206ENST00000586058 CDC42BPAQ5VT25 1732 aa9.4□□□□□ -0.9
LIG3-206ENST00000586058 UACAQ9BZF9 1416 aa9.39□□□□□ -0.91
LIG3-206ENST00000586058 PTPN23Q9H3S7 1636 aa9.39□□□□□ -0.91
LIG3-206ENST00000586058 NCOA2Q15596 1464 aa9.39□□□□□ -0.91
LIG3-206ENST00000586058 TRHP20396 242 aaPredicted RBP9.38□□□□□ -0.91
LIG3-206ENST00000586058 RRBP1Q9P2E9 1410 aaKnown RBP9.38□□□□□ -0.91
LIG3-206ENST00000586058 MAGI3Q5TCQ9 1506 aa9.37□□□□□ -0.91
LIG3-206ENST00000586058 ADGBQ8N7X0 1667 aa9.37□□□□□ -0.91
LIG3-206ENST00000586058 UHRF1BP1LA0JNW5 1464 aa9.37□□□□□ -0.91
LIG3-206ENST00000586058 PREX2Q70Z35 1606 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms