RNA–Protein interactions for RNA: ENST00000569687.1

SF3B3-213, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 333 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-213ENST00000569687 IGF1RP08069 1367 aa8.35□□□□□ -1.07
SF3B3-213ENST00000569687 POLA1P09884 1462 aaPredicted RBP8.34□□□□□ -1.07
SF3B3-213ENST00000569687 CLIP1P30622 1438 aa8.34□□□□□ -1.07
SF3B3-213ENST00000569687 WDR62O43379 1518 aa8.33□□□□□ -1.08
SF3B3-213ENST00000569687 THOC2Q8NI27 1593 aaKnown RBP8.32□□□□□ -1.08
SF3B3-213ENST00000569687 ATXN8OSP0DMR3 200 aa8.31□□□□□ -1.08
SF3B3-213ENST00000569687 ABCA10Q8WWZ4 1543 aa8.3□□□□□ -1.08
SF3B3-213ENST00000569687 RAD54L2Q9Y4B4 1467 aa8.3□□□□□ -1.08
SF3B3-213ENST00000569687 VPS8Q8N3P4 1428 aa8.29□□□□□ -1.08
SF3B3-213ENST00000569687 HOXD11P31277 338 aaPredicted RBP8.29□□□□□ -1.08
SF3B3-213ENST00000569687 CUX2O14529 1486 aa8.29□□□□□ -1.08
SF3B3-213ENST00000569687 WDR97A6NE52 1622 aa8.29□□□□□ -1.08
SF3B3-213ENST00000569687 CARMIL1Q5VZK9 1371 aa8.28□□□□□ -1.08
SF3B3-213ENST00000569687 PPARGC1BQ86YN6 1023 aaKnown RBP8.28□□□□□ -1.08
SF3B3-213ENST00000569687 TARBP1Q13395 1621 aaKnown RBP8.27□□□□□ -1.09
SF3B3-213ENST00000569687 MYCNP04198 464 aaPredicted RBP8.26□□□□□ -1.09
SF3B3-213ENST00000569687 IFT140Q96RY7 1462 aa8.25□□□□□ -1.09
SF3B3-213ENST00000569687 ABCA5Q8WWZ7 1642 aa8.25□□□□□ -1.09
SF3B3-213ENST00000569687 APLP2Q06481 763 aa8.24□□□□□ -1.09
SF3B3-213ENST00000569687 DMRT2Q9Y5R5 561 aa8.23□□□□□ -1.09
SF3B3-213ENST00000569687 GAPVD1Q14C86 1478 aa8.21□□□□□ -1.09
SF3B3-213ENST00000569687 ARAP1Q96P48 1450 aa8.21□□□□□ -1.09
SF3B3-213ENST00000569687 TDRD9Q8NDG6 1382 aaKnown RBP8.21□□□□□ -1.1
SF3B3-213ENST00000569687 CUL7Q14999 1698 aa8.2□□□□□ -1.1
SF3B3-213ENST00000569687 ARHGAP35Q9NRY4 1499 aa8.19□□□□□ -1.1
SF3B3-213ENST00000569687 ZNF608Q9ULD9 1512 aaPredicted RBP8.19□□□□□ -1.1
SF3B3-213ENST00000569687 AQRO60306 1485 aaKnown RBP eCLIP8.18□□□□□ -1.11e-7■■□□□ 13.1
SF3B3-213ENST00000569687 EIF4G3O43432 1585 aaKnown RBP8.18□□□□□ -1.1
SF3B3-213ENST00000569687 PBRM1Q86U86 1689 aa8.18□□□□□ -1.1
SF3B3-213ENST00000569687 GRIN2BQ13224 1484 aa8.17□□□□□ -1.1
SF3B3-213ENST00000569687 MAP3K1Q13233 1512 aa8.17□□□□□ -1.1
SF3B3-213ENST00000569687 RANGAP1P46060 587 aaPredicted RBP8.16□□□□□ -1.1
SF3B3-213ENST00000569687 ADAMTS12P58397 1594 aa8.14□□□□□ -1.11
SF3B3-213ENST00000569687 KANK4Q5T7N3 995 aaPredicted RBP8.14□□□□□ -1.11
SF3B3-213ENST00000569687 FHAD1B1AJZ9 1412 aa8.13□□□□□ -1.11
SF3B3-213ENST00000569687 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.13□□□□□ -1.11
SF3B3-213ENST00000569687 CCER1Q8TC90 406 aaPredicted RBP8.13□□□□□ -1.11
SF3B3-213ENST00000569687 SNAPC4Q5SXM2 1469 aa8.13□□□□□ -1.11
SF3B3-213ENST00000569687 TTBK1Q5TCY1 1321 aaPredicted RBP8.12□□□□□ -1.11
SF3B3-213ENST00000569687 MAGI1Q96QZ7 1491 aaPredicted RBP8.12□□□□□ -1.11
SF3B3-213ENST00000569687 EFCAB5A4FU69 1503 aa8.1□□□□□ -1.11
SF3B3-213ENST00000569687 RRBP1Q9P2E9 1410 aaKnown RBP8.1□□□□□ -1.11
SF3B3-213ENST00000569687 SYNJ2O15056 1496 aa8.08□□□□□ -1.12
SF3B3-213ENST00000569687 CASKIN1Q8WXD9 1431 aa8.08□□□□□ -1.12
SF3B3-213ENST00000569687 CTTNBP2Q8WZ74 1663 aa8.08□□□□□ -1.12
SF3B3-213ENST00000569687 GRIN2AQ12879 1464 aa8.07□□□□□ -1.12
SF3B3-213ENST00000569687 HNRNPUL2Q1KMD3 747 aaKnown RBP8.07□□□□□ -1.12
SF3B3-213ENST00000569687 ATF5Q9Y2D1 282 aaPredicted RBP8.07□□□□□ -1.12
SF3B3-213ENST00000569687 FMN1Q68DA7 1419 aa8.06□□□□□ -1.12
SF3B3-213ENST00000569687 LRRC9Q6ZRR7 1453 aa8.06□□□□□ -1.12
SF3B3-213ENST00000569687 CLSPNQ9HAW4 1339 aa8.05□□□□□ -1.12
SF3B3-213ENST00000569687 CCNB3Q8WWL7 1395 aa8.05□□□□□ -1.12
SF3B3-213ENST00000569687 FYCO1Q9BQS8 1478 aa8.05□□□□□ -1.12
SF3B3-213ENST00000569687 TIAM1Q13009 1591 aa8.05□□□□□ -1.12
SF3B3-213ENST00000569687 P3H3Q8IVL6 736 aa8.04□□□□□ -1.12
SF3B3-213ENST00000569687 FHOD3Q2V2M9 1422 aa8.03□□□□□ -1.12
SF3B3-213ENST00000569687 IQGAP2Q13576 1575 aa8.03□□□□□ -1.12
SF3B3-213ENST00000569687 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.03□□□□□ -1.12
SF3B3-213ENST00000569687 CHMP7Q8WUX9 453 aaPredicted RBP8.03□□□□□ -1.12
SF3B3-213ENST00000569687 NUP160Q12769 1436 aa8.03□□□□□ -1.12
SF3B3-213ENST00000569687 SAMD9Q5K651 1589 aa8.02□□□□□ -1.13
SF3B3-213ENST00000569687 CEP170Q5SW79 1584 aa8.02□□□□□ -1.13
SF3B3-213ENST00000569687 KIAA0586Q9BVV6 1533 aa8.02□□□□□ -1.13
SF3B3-213ENST00000569687 FBLN2P98095 1184 aa8□□□□□ -1.13
SF3B3-213ENST00000569687 UGGT2Q9NYU1 1516 aa7.99□□□□□ -1.13
SF3B3-213ENST00000569687 CHD1O14646 1710 aa7.99□□□□□ -1.13
SF3B3-213ENST00000569687 PHLDB1Q86UU1 1377 aa7.98□□□□□ -1.13
SF3B3-213ENST00000569687 CFAP43Q8NDM7 1665 aa7.98□□□□□ -1.13
SF3B3-213ENST00000569687 PCF11O94913 1555 aaKnown RBP7.97□□□□□ -1.13
SF3B3-213ENST00000569687 ATP1B4Q9UN42 357 aaPredicted RBP7.97□□□□□ -1.13
SF3B3-213ENST00000569687 DHX57Q6P158 1386 aaKnown RBP7.97□□□□□ -1.13
SF3B3-213ENST00000569687 DISP1Q96F81 1524 aa7.95□□□□□ -1.14
SF3B3-213ENST00000569687 PLCB2Q00722 1185 aa7.95□□□□□ -1.14
SF3B3-213ENST00000569687 KIAA0556O60303 1618 aa7.95□□□□□ -1.14
SF3B3-213ENST00000569687 SETD5Q9C0A6 1442 aa7.95□□□□□ -1.14
SF3B3-213ENST00000569687 MTUS2Q5JR59 1369 aa7.94□□□□□ -1.14
SF3B3-213ENST00000569687 CCDC18Q5T9S5 1454 aa7.94□□□□□ -1.14
SF3B3-213ENST00000569687 CLASP1Q7Z460 1538 aa7.93□□□□□ -1.14
SF3B3-213ENST00000569687 ZNF316A6NFI3 1004 aaPredicted RBP7.93□□□□□ -1.14
SF3B3-213ENST00000569687 JPH4Q96JJ6 628 aa7.93□□□□□ -1.14
SF3B3-213ENST00000569687 SHROOM2Q13796 1616 aa7.92□□□□□ -1.14
SF3B3-213ENST00000569687 CARMIL2Q6F5E8 1435 aa7.92□□□□□ -1.14
SF3B3-213ENST00000569687 FGD6Q6ZV73 1430 aa7.92□□□□□ -1.14
SF3B3-213ENST00000569687 FAM50AQ14320 339 aaKnown RBP7.91□□□□□ -1.14
SF3B3-213ENST00000569687 SAMD1Q6SPF0 538 aaPredicted RBP7.91□□□□□ -1.14
SF3B3-213ENST00000569687 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.91□□□□□ -1.143e-11■□□□□ 8.8
SF3B3-213ENST00000569687 RAB3GAP2Q9H2M9 1393 aa7.91□□□□□ -1.14
SF3B3-213ENST00000569687 ARHGEF11O15085 1522 aa7.91□□□□□ -1.14
SF3B3-213ENST00000569687 EPRSP07814 1512 aaKnown RBP7.9□□□□□ -1.14
SF3B3-213ENST00000569687 NCOA2Q15596 1464 aa7.9□□□□□ -1.14
SF3B3-213ENST00000569687 MYOM3Q5VTT5 1437 aa7.9□□□□□ -1.14
SF3B3-213ENST00000569687 TIMELESSQ9UNS1 1208 aa7.9□□□□□ -1.14
SF3B3-213ENST00000569687 EHBP1L1Q8N3D4 1523 aa7.89□□□□□ -1.15
SF3B3-213ENST00000569687 PRG4Q92954 1404 aaPredicted RBP7.89□□□□□ -1.15
SF3B3-213ENST00000569687 ITGAEP38570 1179 aa7.89□□□□□ -1.15
SF3B3-213ENST00000569687 MIA2Q96PC5 1412 aa7.88□□□□□ -1.15
SF3B3-213ENST00000569687 ACIN1Q9UKV3 1341 aaKnown RBP7.88□□□□□ -1.15
SF3B3-213ENST00000569687 DCAF8L1A6NGE4 600 aa7.88□□□□□ -1.15
SF3B3-213ENST00000569687 DIEXFQ68CQ4 756 aaKnown RBP7.88□□□□□ -1.15
SF3B3-213ENST00000569687 FBXO3Q9UK99 471 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms