RNA–Protein interactions for RNA: ENST00000564606.5

ATXN3-249, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 645 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-249ENST00000564606 CFTRP13569 1480 aa11.23□□□□□ -0.61
ATXN3-249ENST00000564606 RAPGEF2Q9Y4G8 1499 aa11.22□□□□□ -0.61
ATXN3-249ENST00000564606 SAMD1Q6SPF0 538 aaPredicted RBP11.18□□□□□ -0.62
ATXN3-249ENST00000564606 MYT1Q01538 1121 aa11.17□□□□□ -0.62
ATXN3-249ENST00000564606 MAP3K1Q13233 1512 aa11.16□□□□□ -0.62
ATXN3-249ENST00000564606 PRDM2Q13029 1718 aa11.16□□□□□ -0.62
ATXN3-249ENST00000564606 HNRNPUL2Q1KMD3 747 aaKnown RBP11.14□□□□□ -0.63
ATXN3-249ENST00000564606 TTBK1Q5TCY1 1321 aaPredicted RBP11.13□□□□□ -0.63
ATXN3-249ENST00000564606 FHAD1B1AJZ9 1412 aa11.13□□□□□ -0.63
ATXN3-249ENST00000564606 CADPSQ9ULU8 1353 aa11.13□□□□□ -0.63
ATXN3-249ENST00000564606 RRBP1Q9P2E9 1410 aaKnown RBP11.11□□□□□ -0.63
ATXN3-249ENST00000564606 CUX1P39880 1505 aa11.11□□□□□ -0.63
ATXN3-249ENST00000564606 FKBP8Q14318 412 aa11.09□□□□□ -0.63
ATXN3-249ENST00000564606 CUX2O14529 1486 aa11.08□□□□□ -0.64
ATXN3-249ENST00000564606 ARAP1Q96P48 1450 aa11.08□□□□□ -0.64
ATXN3-249ENST00000564606 RNF39Q9H2S5 420 aa11.08□□□□□ -0.64
ATXN3-249ENST00000564606 SPINK5Q9NQ38 1064 aaPredicted RBP11.08□□□□□ -0.64
ATXN3-249ENST00000564606 TIMELESSQ9UNS1 1208 aa11.08□□□□□ -0.64
ATXN3-249ENST00000564606 CCNB3Q8WWL7 1395 aa11.07□□□□□ -0.64
ATXN3-249ENST00000564606 ZNF219Q9P2Y4 722 aaPredicted RBP11.06□□□□□ -0.64
ATXN3-249ENST00000564606 CARMIL1Q5VZK9 1371 aa11.04□□□□□ -0.64
ATXN3-249ENST00000564606 IGF1RP08069 1367 aa11.03□□□□□ -0.64
ATXN3-249ENST00000564606 NEUROD1Q13562 356 aa11.02□□□□□ -0.65
ATXN3-249ENST00000564606 EFCAB5A4FU69 1503 aa11.02□□□□□ -0.65
ATXN3-249ENST00000564606 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.02□□□□□ -0.65
ATXN3-249ENST00000564606 ARHGAP35Q9NRY4 1499 aa11.01□□□□□ -0.65
ATXN3-249ENST00000564606 DHX57Q6P158 1386 aaKnown RBP11.01□□□□□ -0.65
ATXN3-249ENST00000564606 RANGAP1P46060 587 aaPredicted RBP11□□□□□ -0.65
ATXN3-249ENST00000564606 GTF3C3Q9Y5Q9 886 aa11□□□□□ -0.65
ATXN3-249ENST00000564606 AQRO60306 1485 aaKnown RBP eCLIP10.99□□□□□ -0.65
ATXN3-249ENST00000564606 CC2D2AQ9P2K1 1620 aa10.98□□□□□ -0.65
ATXN3-249ENST00000564606 TIAM1Q13009 1591 aa10.98□□□□□ -0.65
ATXN3-249ENST00000564606 CUL7Q14999 1698 aa10.98□□□□□ -0.65
ATXN3-249ENST00000564606 FMN1Q68DA7 1419 aa10.97□□□□□ -0.65
ATXN3-249ENST00000564606 FGD5Q6ZNL6 1462 aa10.97□□□□□ -0.65
ATXN3-249ENST00000564606 DNMBPQ6XZF7 1577 aa10.97□□□□□ -0.65
ATXN3-249ENST00000564606 ABCA10Q8WWZ4 1543 aa10.95□□□□□ -0.66
ATXN3-249ENST00000564606 FYCO1Q9BQS8 1478 aa10.95□□□□□ -0.66
ATXN3-249ENST00000564606 FANCD2Q9BXW9 1451 aa10.95□□□□□ -0.66
ATXN3-249ENST00000564606 SETD5Q9C0A6 1442 aa10.95□□□□□ -0.66
ATXN3-249ENST00000564606 MKRN4PQ13434 485 aaPredicted RBP10.95□□□□□ -0.66
ATXN3-249ENST00000564606 LRRC9Q6ZRR7 1453 aa10.94□□□□□ -0.66
ATXN3-249ENST00000564606 TRHP20396 242 aaPredicted RBP10.93□□□□□ -0.66
ATXN3-249ENST00000564606 KANK4Q5T7N3 995 aaPredicted RBP10.93□□□□□ -0.66
ATXN3-249ENST00000564606 CASKIN1Q8WXD9 1431 aa10.92□□□□□ -0.66
ATXN3-249ENST00000564606 LAMC3Q9Y6N6 1575 aa10.91□□□□□ -0.66
ATXN3-249ENST00000564606 MIER1Q8N108 512 aa10.91□□□□□ -0.66
ATXN3-249ENST00000564606 CFAP43Q8NDM7 1665 aa10.89□□□□□ -0.67
ATXN3-249ENST00000564606 PDS5BQ9NTI5 1447 aa10.89□□□□□ -0.67
ATXN3-249ENST00000564606 THOC2Q8NI27 1593 aaKnown RBP10.88□□□□□ -0.67
ATXN3-249ENST00000564606 RAB3GAP2Q9H2M9 1393 aa10.88□□□□□ -0.67
ATXN3-249ENST00000564606 TOPBP1Q92547 1522 aa10.87□□□□□ -0.67
ATXN3-249ENST00000564606 CAPN15O75808 1086 aa10.85□□□□□ -0.67
ATXN3-249ENST00000564606 C1QBPQ07021 282 aaKnown RBP10.85□□□□□ -0.67
ATXN3-249ENST00000564606 POLA2Q14181 598 aa10.85□□□□□ -0.67
ATXN3-249ENST00000564606 YTHDC1Q96MU7 727 aaKnown RBP10.85□□□□□ -0.67
ATXN3-249ENST00000564606 FAM50AQ14320 339 aaKnown RBP10.84□□□□□ -0.67
ATXN3-249ENST00000564606 CTTNBP2Q8WZ74 1663 aa10.83□□□□□ -0.68
ATXN3-249ENST00000564606 POLA1P09884 1462 aaPredicted RBP10.83□□□□□ -0.68
ATXN3-249ENST00000564606 MTUS2Q5JR59 1369 aa10.83□□□□□ -0.68
ATXN3-249ENST00000564606 KIF21AQ7Z4S6 1674 aa10.82□□□□□ -0.68
ATXN3-249ENST00000564606 CCDC18Q5T9S5 1454 aa10.82□□□□□ -0.68
ATXN3-249ENST00000564606 ATP1B4Q9UN42 357 aaPredicted RBP10.81□□□□□ -0.68
ATXN3-249ENST00000564606 ITGAEP38570 1179 aa10.8□□□□□ -0.68
ATXN3-249ENST00000564606 PCF11O94913 1555 aaKnown RBP10.8□□□□□ -0.68
ATXN3-249ENST00000564606 RTN4Q9NQC3 1192 aaKnown RBP10.79□□□□□ -0.68
ATXN3-249ENST00000564606 PHLDB1Q86UU1 1377 aa10.78□□□□□ -0.68
ATXN3-249ENST00000564606 ABCB7O75027 752 aa10.78□□□□□ -0.68
ATXN3-249ENST00000564606 GAPVD1Q14C86 1478 aa10.78□□□□□ -0.68
ATXN3-249ENST00000564606 EHBP1L1Q8N3D4 1523 aa10.78□□□□□ -0.68
ATXN3-249ENST00000564606 TONSLQ96HA7 1378 aa10.77□□□□□ -0.68
ATXN3-249ENST00000564606 FGD6Q6ZV73 1430 aa10.77□□□□□ -0.68
ATXN3-249ENST00000564606 CCER2I3L3R5 266 aa10.77□□□□□ -0.69
ATXN3-249ENST00000564606 UACAQ9BZF9 1416 aa10.76□□□□□ -0.69
ATXN3-249ENST00000564606 ANP32CO43423 234 aa10.76□□□□□ -0.69
ATXN3-249ENST00000564606 HFM1A2PYH4 1435 aa10.75□□□□□ -0.69
ATXN3-249ENST00000564606 FHOD3Q2V2M9 1422 aa10.75□□□□□ -0.69
ATXN3-249ENST00000564606 WDR97A6NE52 1622 aa10.75□□□□□ -0.69
ATXN3-249ENST00000564606 SUPT6HQ7KZ85 1726 aaKnown RBP10.75□□□□□ -0.69
ATXN3-249ENST00000564606 MYOM3Q5VTT5 1437 aa10.75□□□□□ -0.69
ATXN3-249ENST00000564606 AKNAQ7Z591 1439 aa10.75□□□□□ -0.69
ATXN3-249ENST00000564606 MAPKBP1O60336 1514 aa10.74□□□□□ -0.69
ATXN3-249ENST00000564606 SAMD9Q5K651 1589 aa10.74□□□□□ -0.69
ATXN3-249ENST00000564606 NEFLP07196 543 aa10.74□□□□□ -0.69
ATXN3-249ENST00000564606 RAD54L2Q9Y4B4 1467 aa10.74□□□□□ -0.69
ATXN3-249ENST00000564606 ABCA5Q8WWZ7 1642 aa10.73□□□□□ -0.69
ATXN3-249ENST00000564606 PPP1R15AO75807 674 aaPredicted RBP10.73□□□□□ -0.69
ATXN3-249ENST00000564606 MIA2Q96PC5 1412 aa10.73□□□□□ -0.69
ATXN3-249ENST00000564606 CDK11AQ9UQ88 783 aaPredicted RBP10.72□□□□□ -0.69
ATXN3-249ENST00000564606 SPDYE4A6NLX3 237 aa10.71□□□□□ -0.69
ATXN3-249ENST00000564606 SNAPC4Q5SXM2 1469 aa10.71□□□□□ -0.69
ATXN3-249ENST00000564606 HECW1Q76N89 1606 aa10.71□□□□□ -0.69
ATXN3-249ENST00000564606 P3H3Q8IVL6 736 aa10.7□□□□□ -0.7
ATXN3-249ENST00000564606 GRIN2BQ13224 1484 aa10.69□□□□□ -0.7
ATXN3-249ENST00000564606 URB2Q14146 1524 aaKnown RBP10.68□□□□□ -0.7
ATXN3-249ENST00000564606 NCOA2Q15596 1464 aa10.68□□□□□ -0.7
ATXN3-249ENST00000564606 DSG3P32926 999 aa10.68□□□□□ -0.7
ATXN3-249ENST00000564606 TCOF1Q13428 1488 aaKnown RBP10.67□□□□□ -0.7
ATXN3-249ENST00000564606 PROM2Q8N271 834 aa10.66□□□□□ -0.7
ATXN3-249ENST00000564606 PTPN23Q9H3S7 1636 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 172.5 ms