RNA–Protein interactions for RNA: ENST00000564606.5

ATXN3-249, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 645 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-249ENST00000564606 AEBP2Q6ZN18 517 aaPredicted RBP18.24■□□□□ 0.51
ATXN3-249ENST00000564606 CHIC1Q5VXU3 224 aa17.98■□□□□ 0.47
ATXN3-249ENST00000564606 PHF23Q9BUL5 403 aaPredicted RBP16.01■□□□□ 0.15
ATXN3-249ENST00000564606 NISCHQ9Y2I1 1504 aa15.52■□□□□ 0.07
ATXN3-249ENST00000564606 SENP3Q9H4L4 574 aaPredicted RBP15.14■□□□□ 0.01
ATXN3-249ENST00000564606 PLPPR3Q6T4P5 718 aa14.64□□□□□ -0.07
ATXN3-249ENST00000564606 FOXD1Q16676 465 aa14.2□□□□□ -0.14
ATXN3-249ENST00000564606 PPP6R1Q9UPN7 881 aa14.04□□□□□ -0.16
ATXN3-249ENST00000564606 ADRA2BP18089 450 aa13.99□□□□□ -0.17
ATXN3-249ENST00000564606 PIAS4Q8N2W9 510 aaPredicted RBP13.35□□□□□ -0.27
ATXN3-249ENST00000564606 CCDC180Q9P1Z9 1646 aa13.35□□□□□ -0.27
ATXN3-249ENST00000564606 KCNA4P22459 653 aa13.22□□□□□ -0.29
ATXN3-249ENST00000564606 ZCCHC6Q5VYS8 1495 aaKnown RBP13.13□□□□□ -0.31
ATXN3-249ENST00000564606 PPP4R3CPQ6ZMV5 832 aa13.04□□□□□ -0.32
ATXN3-249ENST00000564606 DCAF1Q9Y4B6 1507 aa12.96□□□□□ -0.33
ATXN3-249ENST00000564606 SHROOM4Q9ULL8 1493 aa12.9□□□□□ -0.34
ATXN3-249ENST00000564606 SUPT5HO00267 1087 aaKnown RBP12.79□□□□□ -0.36
ATXN3-249ENST00000564606 MSH5O43196 834 aa12.73□□□□□ -0.37
ATXN3-249ENST00000564606 DCAF8L2P0C7V8 631 aa12.68□□□□□ -0.38
ATXN3-249ENST00000564606 NPM3O75607 178 aaKnown RBP12.65□□□□□ -0.38
ATXN3-249ENST00000564606 MYO15BQ96JP2 1530 aa12.64□□□□□ -0.39
ATXN3-249ENST00000564606 MAPK8IP2Q13387 824 aaPredicted RBP12.64□□□□□ -0.39
ATXN3-249ENST00000564606 EHMT2Q96KQ7 1210 aa12.63□□□□□ -0.39
ATXN3-249ENST00000564606 NCBP3Q53F19 620 aaKnown RBP12.61□□□□□ -0.39
ATXN3-249ENST00000564606 CNKSR2Q8WXI2 1034 aa12.52□□□□□ -0.41
ATXN3-249ENST00000564606 SLC4A1APQ9BWU0 796 aaKnown RBP12.52□□□□□ -0.41
ATXN3-249ENST00000564606 SCAF1Q9H7N4 1312 aaKnown RBP12.47□□□□□ -0.41
ATXN3-249ENST00000564606 CSRNP3Q8WYN3 585 aa12.4□□□□□ -0.42
ATXN3-249ENST00000564606 ABCC9O60706 1549 aa12.38□□□□□ -0.43
ATXN3-249ENST00000564606 NACADO15069 1562 aa12.35□□□□□ -0.43
ATXN3-249ENST00000564606 ZBTB22O15209 634 aa12.27□□□□□ -0.45
ATXN3-249ENST00000564606 HRCP23327 699 aa12.25□□□□□ -0.45
ATXN3-249ENST00000564606 RB1CC1Q8TDY2 1594 aa12.22□□□□□ -0.45
ATXN3-249ENST00000564606 RSF1Q96T23 1441 aaPredicted RBP12.21□□□□□ -0.45
ATXN3-249ENST00000564606 DMRT2Q9Y5R5 561 aa12.21□□□□□ -0.45
ATXN3-249ENST00000564606 SCRIBQ14160 1630 aa12.2□□□□□ -0.46
ATXN3-249ENST00000564606 RNF216Q9NWF9 866 aaPredicted RBP12.2□□□□□ -0.46
ATXN3-249ENST00000564606 ZEB1P37275 1124 aaPredicted RBP12.15□□□□□ -0.46
ATXN3-249ENST00000564606 DNAJC5BQ9UF47 199 aa12.14□□□□□ -0.47
ATXN3-249ENST00000564606 TRIM26Q12899 539 aaPredicted RBP12.13□□□□□ -0.47
ATXN3-249ENST00000564606 HOXD11P31277 338 aaPredicted RBP12.12□□□□□ -0.47
ATXN3-249ENST00000564606 TRIM41Q8WV44 630 aa12.12□□□□□ -0.47
ATXN3-249ENST00000564606 PCGF6Q9BYE7 350 aa12.1□□□□□ -0.47
ATXN3-249ENST00000564606 BAZ1AQ9NRL2 1556 aaPredicted RBP12.03□□□□□ -0.48
ATXN3-249ENST00000564606 LOC105371045A0A1W2PR82 267 aa11.95□□□□□ -0.5
ATXN3-249ENST00000564606 SLC4A2P04920 1241 aa11.94□□□□□ -0.5
ATXN3-249ENST00000564606 FOXD4L1Q9NU39 408 aa11.92□□□□□ -0.5
ATXN3-249ENST00000564606 MROH2BQ7Z745 1585 aa11.91□□□□□ -0.5
ATXN3-249ENST00000564606 CECR2Q9BXF3 1484 aa11.87□□□□□ -0.51
ATXN3-249ENST00000564606 EEA1Q15075 1411 aa11.86□□□□□ -0.51
ATXN3-249ENST00000564606 TOP2AP11388 1531 aaKnown RBP11.86□□□□□ -0.51
ATXN3-249ENST00000564606 WIZO95785 1651 aa11.81□□□□□ -0.52
ATXN3-249ENST00000564606 SMARCA4P51532 1647 aa11.78□□□□□ -0.52
ATXN3-249ENST00000564606 FAM9AQ8IZU1 332 aaPredicted RBP11.74□□□□□ -0.53
ATXN3-249ENST00000564606 EIF4G1Q04637 1599 aaKnown RBP11.7□□□□□ -0.54
ATXN3-249ENST00000564606 WRNQ14191 1432 aaPredicted RBP eCLIP11.69□□□□□ -0.54
ATXN3-249ENST00000564606 CCDC88BA6NC98 1476 aa11.68□□□□□ -0.54
ATXN3-249ENST00000564606 TNIKQ9UKE5 1360 aa11.67□□□□□ -0.54
ATXN3-249ENST00000564606 SMARCA2P51531 1590 aa11.67□□□□□ -0.54
ATXN3-249ENST00000564606 PEG3Q9GZU2 1588 aa11.67□□□□□ -0.54
ATXN3-249ENST00000564606 DCAF8L1A6NGE4 600 aa11.61□□□□□ -0.55
ATXN3-249ENST00000564606 GOLGA3Q08378 1498 aa11.6□□□□□ -0.55
ATXN3-249ENST00000564606 PPARGC1BQ86YN6 1023 aaKnown RBP11.6□□□□□ -0.55
ATXN3-249ENST00000564606 UNC13AQ9UPW8 1703 aa11.59□□□□□ -0.55
ATXN3-249ENST00000564606 PELP1Q8IZL8 1130 aaKnown RBP11.57□□□□□ -0.56
ATXN3-249ENST00000564606 CEP162Q5TB80 1403 aa11.56□□□□□ -0.56
ATXN3-249ENST00000564606 CEP164Q9UPV0 1460 aa11.56□□□□□ -0.56
ATXN3-249ENST00000564606 MYCNP04198 464 aaPredicted RBP11.55□□□□□ -0.56
ATXN3-249ENST00000564606 CCER1Q8TC90 406 aaPredicted RBP11.55□□□□□ -0.56
ATXN3-249ENST00000564606 UBTFP17480 764 aaKnown RBP11.54□□□□□ -0.56
ATXN3-249ENST00000564606 BAZ1BQ9UIG0 1483 aaKnown RBP11.52□□□□□ -0.56
ATXN3-249ENST00000564606 APLP2Q06481 763 aa11.52□□□□□ -0.57
ATXN3-249ENST00000564606 ABCC8Q09428 1581 aa11.5□□□□□ -0.57
ATXN3-249ENST00000564606 BICRAQ9NZM4 1560 aa11.5□□□□□ -0.57
ATXN3-249ENST00000564606 KIF21BO75037 1637 aa11.49□□□□□ -0.57
ATXN3-249ENST00000564606 ATAD2BQ9ULI0 1458 aa11.49□□□□□ -0.57
ATXN3-249ENST00000564606 ATF5Q9Y2D1 282 aaPredicted RBP11.48□□□□□ -0.57
ATXN3-249ENST00000564606 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.45□□□□□ -0.58
ATXN3-249ENST00000564606 U3KPZ7 1027 aaPredicted RBP11.45□□□□□ -0.58
ATXN3-249ENST00000564606 SOGA1O94964 1423 aa11.44□□□□□ -0.58
ATXN3-249ENST00000564606 CENPBP07199 599 aaPredicted RBP11.44□□□□□ -0.58
ATXN3-249ENST00000564606 ATXN8OSP0DMR3 200 aa11.41□□□□□ -0.58
ATXN3-249ENST00000564606 PABPN1Q86U42 306 aaKnown RBP eCLIP11.41□□□□□ -0.58
ATXN3-249ENST00000564606 HMGXB3Q12766 1538 aa11.4□□□□□ -0.58
ATXN3-249ENST00000564606 CLIP1P30622 1438 aa11.4□□□□□ -0.58
ATXN3-249ENST00000564606 CLSPNQ9HAW4 1339 aa11.38□□□□□ -0.59
ATXN3-249ENST00000564606 VPS8Q8N3P4 1428 aa11.38□□□□□ -0.59
ATXN3-249ENST00000564606 ERICH3Q5RHP9 1530 aa11.37□□□□□ -0.59
ATXN3-249ENST00000564606 TOP2BQ02880 1626 aa11.36□□□□□ -0.59
ATXN3-249ENST00000564606 NCAPD3P42695 1498 aa11.36□□□□□ -0.59
ATXN3-249ENST00000564606 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.35□□□□□ -0.59
ATXN3-249ENST00000564606 SYNJ1O43426 1573 aa11.33□□□□□ -0.6
ATXN3-249ENST00000564606 BIVM-ERCC5R4GMW8 1640 aa11.32□□□□□ -0.6
ATXN3-249ENST00000564606 DIEXFQ68CQ4 756 aaKnown RBP11.32□□□□□ -0.6
ATXN3-249ENST00000564606 POTEDQ86YR6 584 aa11.32□□□□□ -0.6
ATXN3-249ENST00000564606 KIF27Q86VH2 1401 aa11.3□□□□□ -0.6
ATXN3-249ENST00000564606 ZNF316A6NFI3 1004 aaPredicted RBP11.29□□□□□ -0.6
ATXN3-249ENST00000564606 RUSC2Q8N2Y8 1516 aa11.28□□□□□ -0.6
ATXN3-249ENST00000564606 PRXQ9BXM0 1461 aa11.25□□□□□ -0.61
ATXN3-249ENST00000564606 ACIN1Q9UKV3 1341 aaKnown RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 108.8 ms