RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 ABCA5Q8WWZ7 1642 aa19.74■□□□□ 0.75
CLK3-206ENST00000562078 IGF1RP08069 1367 aa19.74■□□□□ 0.75
CLK3-206ENST00000562078 TDRD9Q8NDG6 1382 aaKnown RBP19.74■□□□□ 0.75
CLK3-206ENST00000562078 GAPVD1Q14C86 1478 aa19.7■□□□□ 0.74
CLK3-206ENST00000562078 IFT140Q96RY7 1462 aa19.7■□□□□ 0.74
CLK3-206ENST00000562078 RANGAP1P46060 587 aaPredicted RBP19.69■□□□□ 0.74
CLK3-206ENST00000562078 MIER1Q8N108 512 aa19.68■□□□□ 0.74
CLK3-206ENST00000562078 VPS8Q8N3P4 1428 aa19.68■□□□□ 0.74
CLK3-206ENST00000562078 ZNF316A6NFI3 1004 aaPredicted RBP19.67■□□□□ 0.74
CLK3-206ENST00000562078 CUL7Q14999 1698 aa19.67■□□□□ 0.74
CLK3-206ENST00000562078 CARMIL1Q5VZK9 1371 aa19.67■□□□□ 0.74
CLK3-206ENST00000562078 TSHZ2Q9NRE2 1034 aa19.67■□□□□ 0.74
CLK3-206ENST00000562078 PBRM1Q86U86 1689 aa19.66■□□□□ 0.74
CLK3-206ENST00000562078 AQRO60306 1485 aaKnown RBP eCLIP19.62■□□□□ 0.732e-7■■■■■ 41.3
CLK3-206ENST00000562078 ZNF608Q9ULD9 1512 aaPredicted RBP19.62■□□□□ 0.73
CLK3-206ENST00000562078 SUPT16HQ9Y5B9 1047 aaKnown RBP19.61■□□□□ 0.73
CLK3-206ENST00000562078 EIF4G3O43432 1585 aaKnown RBP19.59■□□□□ 0.73
CLK3-206ENST00000562078 ARAP1Q96P48 1450 aa19.58■□□□□ 0.72
CLK3-206ENST00000562078 GRIN2BQ13224 1484 aa19.55■□□□□ 0.72
CLK3-206ENST00000562078 ADAMTS12P58397 1594 aa19.5■□□□□ 0.71
CLK3-206ENST00000562078 APLP2Q06481 763 aa19.49■□□□□ 0.71
CLK3-206ENST00000562078 CTTNBP2Q8WZ74 1663 aa19.49■□□□□ 0.71
CLK3-206ENST00000562078 ARHGAP35Q9NRY4 1499 aa19.47■□□□□ 0.71
CLK3-206ENST00000562078 FHAD1B1AJZ9 1412 aa19.46■□□□□ 0.71
CLK3-206ENST00000562078 SNAPC4Q5SXM2 1469 aa19.46■□□□□ 0.71
CLK3-206ENST00000562078 ERICH6Q7L0X2 663 aa19.4■□□□□ 0.7
CLK3-206ENST00000562078 CLSPNQ9HAW4 1339 aa19.39■□□□□ 0.69
CLK3-206ENST00000562078 MAGI1Q96QZ7 1491 aaPredicted RBP19.39■□□□□ 0.69
CLK3-206ENST00000562078 SYNJ2O15056 1496 aa19.32■□□□□ 0.68
CLK3-206ENST00000562078 GRIN2AQ12879 1464 aa19.32■□□□□ 0.68
CLK3-206ENST00000562078 FBLN2P98095 1184 aa19.31■□□□□ 0.68
CLK3-206ENST00000562078 CHMP7Q8WUX9 453 aaPredicted RBP19.3■□□□□ 0.68
CLK3-206ENST00000562078 HNRNPUL2Q1KMD3 747 aaKnown RBP19.29■□□□□ 0.68
CLK3-206ENST00000562078 KANK4Q5T7N3 995 aaPredicted RBP19.29■□□□□ 0.68
CLK3-206ENST00000562078 EFCAB5A4FU69 1503 aa19.28■□□□□ 0.68
CLK3-206ENST00000562078 IQGAP2Q13576 1575 aa19.28■□□□□ 0.68
CLK3-206ENST00000562078 P3H3Q8IVL6 736 aa19.25■□□□□ 0.67
CLK3-206ENST00000562078 PCF11O94913 1555 aaKnown RBP19.24■□□□□ 0.67
CLK3-206ENST00000562078 TIAM1Q13009 1591 aa19.24■□□□□ 0.67
CLK3-206ENST00000562078 CHD1O14646 1710 aa19.21■□□□□ 0.67
CLK3-206ENST00000562078 SAMD9Q5K651 1589 aa19.21■□□□□ 0.67
CLK3-206ENST00000562078 CEP170Q5SW79 1584 aa19.21■□□□□ 0.67
CLK3-206ENST00000562078 CFAP43Q8NDM7 1665 aa19.21■□□□□ 0.67
CLK3-206ENST00000562078 FHOD3Q2V2M9 1422 aa19.21■□□□□ 0.67
CLK3-206ENST00000562078 KIAA0586Q9BVV6 1533 aa19.2■□□□□ 0.66
CLK3-206ENST00000562078 MAP3K1Q13233 1512 aa19.17■□□□□ 0.66
CLK3-206ENST00000562078 BCANQ96GW7 911 aa19.17■□□□□ 0.66
CLK3-206ENST00000562078 RBM19Q9Y4C8 960 aaKnown RBP19.15■□□□□ 0.66
CLK3-206ENST00000562078 NUP160Q12769 1436 aa19.15■□□□□ 0.66
CLK3-206ENST00000562078 RRBP1Q9P2E9 1410 aaKnown RBP19.15■□□□□ 0.66
CLK3-206ENST00000562078 UGGT2Q9NYU1 1516 aa19.13■□□□□ 0.65
CLK3-206ENST00000562078 LRRC9Q6ZRR7 1453 aa19.11■□□□□ 0.65
CLK3-206ENST00000562078 FYCO1Q9BQS8 1478 aa19.11■□□□□ 0.65
CLK3-206ENST00000562078 FMN1Q68DA7 1419 aa19.1■□□□□ 0.65
CLK3-206ENST00000562078 ATP1B4Q9UN42 357 aaPredicted RBP19.08■□□□□ 0.64
CLK3-206ENST00000562078 KIAA0556O60303 1618 aa19.07■□□□□ 0.64
CLK3-206ENST00000562078 MSH5O43196 834 aa19.07■□□□□ 0.64
CLK3-206ENST00000562078 CCNB3Q8WWL7 1395 aa19.07■□□□□ 0.64
CLK3-206ENST00000562078 CASKIN1Q8WXD9 1431 aa19.06■□□□□ 0.64
CLK3-206ENST00000562078 LRRIQ1Q96JM4 1722 aa19.06■□□□□ 0.64
CLK3-206ENST00000562078 DISP1Q96F81 1524 aa19.05■□□□□ 0.64
CLK3-206ENST00000562078 ANO8Q9HCE9 1232 aaPredicted RBP19.02■□□□□ 0.64
CLK3-206ENST00000562078 JPH4Q96JJ6 628 aa19.01■□□□□ 0.63
CLK3-206ENST00000562078 CARMIL2Q6F5E8 1435 aa18.99■□□□□ 0.63
CLK3-206ENST00000562078 PHLDB1Q86UU1 1377 aa18.99■□□□□ 0.63
CLK3-206ENST00000562078 FKBP8Q14318 412 aa18.97■□□□□ 0.63
CLK3-206ENST00000562078 ITGAEP38570 1179 aa18.96■□□□□ 0.63
CLK3-206ENST00000562078 HECW1Q76N89 1606 aa18.94■□□□□ 0.62
CLK3-206ENST00000562078 PRG4Q92954 1404 aaPredicted RBP18.92■□□□□ 0.62
CLK3-206ENST00000562078 SHROOM2Q13796 1616 aa18.92■□□□□ 0.62
CLK3-206ENST00000562078 DHX57Q6P158 1386 aaKnown RBP18.92■□□□□ 0.62
CLK3-206ENST00000562078 CLASP1Q7Z460 1538 aa18.91■□□□□ 0.62
CLK3-206ENST00000562078 SLC24A1O60721 1099 aa18.9■□□□□ 0.62
CLK3-206ENST00000562078 RAPGEF6Q8TEU7 1601 aa18.89■□□□□ 0.61
CLK3-206ENST00000562078 CCDC18Q5T9S5 1454 aa18.88■□□□□ 0.61
CLK3-206ENST00000562078 KCNH8Q96L42 1107 aa18.87■□□□□ 0.61
CLK3-206ENST00000562078 FAM50AQ14320 339 aaKnown RBP18.86■□□□□ 0.61
CLK3-206ENST00000562078 MTUS2Q5JR59 1369 aa18.86■□□□□ 0.61
CLK3-206ENST00000562078 SUPT6HQ7KZ85 1726 aaKnown RBP18.85■□□□□ 0.61
CLK3-206ENST00000562078 ARID3CA6NKF2 412 aa18.84■□□□□ 0.61
CLK3-206ENST00000562078 EPRSP07814 1512 aaKnown RBP18.84■□□□□ 0.61
CLK3-206ENST00000562078 DEKP35659 375 aaKnown RBP18.84■□□□□ 0.61
CLK3-206ENST00000562078 PLB1Q6P1J6 1458 aa18.83■□□□□ 0.61
CLK3-206ENST00000562078 CDK13Q14004 1512 aaKnown RBP18.83■□□□□ 0.6
CLK3-206ENST00000562078 EHBP1L1Q8N3D4 1523 aa18.83■□□□□ 0.6
CLK3-206ENST00000562078 ERCC6L2Q5T890 1561 aa18.82■□□□□ 0.6
CLK3-206ENST00000562078 RAB3GAP2Q9H2M9 1393 aa18.82■□□□□ 0.6
CLK3-206ENST00000562078 NUP153P49790 1475 aaKnown RBP18.81■□□□□ 0.6
CLK3-206ENST00000562078 FGD6Q6ZV73 1430 aa18.8■□□□□ 0.6
CLK3-206ENST00000562078 MAGI3Q5TCQ9 1506 aa18.8■□□□□ 0.6
CLK3-206ENST00000562078 PTPRGP23470 1445 aa18.79■□□□□ 0.6
CLK3-206ENST00000562078 NCOA2Q15596 1464 aa18.79■□□□□ 0.6
CLK3-206ENST00000562078 SALL2Q9Y467 1007 aaPredicted RBP18.78■□□□□ 0.6
CLK3-206ENST00000562078 SETD5Q9C0A6 1442 aa18.77■□□□□ 0.6
CLK3-206ENST00000562078 ABCA8O94911 1581 aa18.77■□□□□ 0.6
CLK3-206ENST00000562078 OSCARQ8IYS5 282 aa18.76■□□□□ 0.59
CLK3-206ENST00000562078 FANCIQ9NVI1 1328 aa18.76■□□□□ 0.59
CLK3-206ENST00000562078 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.75■□□□□ 0.59
CLK3-206ENST00000562078 MYOM3Q5VTT5 1437 aa18.73■□□□□ 0.59
CLK3-206ENST00000562078 MAPKBP1O60336 1514 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms