RNA–Protein interactions for RNA: ENST00000558910.2

TPM1-216, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 1,232 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-216ENST00000558910 PBRM1Q86U86 1689 aa20.73■□□□□ 0.91
TPM1-216ENST00000558910 MAGI1Q96QZ7 1491 aaPredicted RBP20.72■□□□□ 0.91
TPM1-216ENST00000558910 ABCA5Q8WWZ7 1642 aa20.71■□□□□ 0.91
TPM1-216ENST00000558910 RIMBP3CA6NJZ7 1639 aa20.68■□□□□ 0.9
TPM1-216ENST00000558910 RIMBP3BA6NNM3 1639 aa20.68■□□□□ 0.9
TPM1-216ENST00000558910 RIMBP3Q9UFD9 1639 aa20.68■□□□□ 0.9
TPM1-216ENST00000558910 SYNJ2O15056 1496 aa20.68■□□□□ 0.9
TPM1-216ENST00000558910 ARHGEF11O15085 1522 aa20.65■□□□□ 0.9
TPM1-216ENST00000558910 CACNB1Q02641 598 aaPredicted RBP20.64■□□□□ 0.89
TPM1-216ENST00000558910 CYB5RLQ6IPT4 315 aa20.64■□□□□ 0.89
TPM1-216ENST00000558910 ADAMTS12P58397 1594 aa20.56■□□□□ 0.88
TPM1-216ENST00000558910 GRIN2AQ12879 1464 aa20.55■□□□□ 0.88
TPM1-216ENST00000558910 FHAD1B1AJZ9 1412 aa20.54■□□□□ 0.88
TPM1-216ENST00000558910 CLASP1Q7Z460 1538 aa20.53■□□□□ 0.88
TPM1-216ENST00000558910 ERICH3Q5RHP9 1530 aa20.52■□□□□ 0.87
TPM1-216ENST00000558910 C1QBPQ07021 282 aaKnown RBP20.51■□□□□ 0.87
TPM1-216ENST00000558910 KIF27Q86VH2 1401 aa20.5■□□□□ 0.87
TPM1-216ENST00000558910 ARAP1Q96P48 1450 aa20.5■□□□□ 0.87
TPM1-216ENST00000558910 SLC4A2P04920 1241 aa20.47■□□□□ 0.87
TPM1-216ENST00000558910 CEP170Q5SW79 1584 aa20.46■□□□□ 0.87
TPM1-216ENST00000558910 IGF1RP08069 1367 aa20.45■□□□□ 0.86
TPM1-216ENST00000558910 NUP160Q12769 1436 aa20.41■□□□□ 0.86
TPM1-216ENST00000558910 SLC4A1APQ9BWU0 796 aaKnown RBP20.4■□□□□ 0.86
TPM1-216ENST00000558910 U3KPZ7 1027 aaPredicted RBP20.39■□□□□ 0.85
TPM1-216ENST00000558910 ERCC6L2Q5T890 1561 aa20.38■□□□□ 0.85
TPM1-216ENST00000558910 RUSC2Q8N2Y8 1516 aa20.37■□□□□ 0.85
TPM1-216ENST00000558910 CARMIL1Q5VZK9 1371 aa20.36■□□□□ 0.85
TPM1-216ENST00000558910 TRHP20396 242 aaPredicted RBP20.36■□□□□ 0.85
TPM1-216ENST00000558910 TTBK1Q5TCY1 1321 aaPredicted RBP20.33■□□□□ 0.85
TPM1-216ENST00000558910 JPH4Q96JJ6 628 aa20.33■□□□□ 0.85
TPM1-216ENST00000558910 PRG4Q92954 1404 aaPredicted RBP20.31■□□□□ 0.84
TPM1-216ENST00000558910 CUL7Q14999 1698 aa20.3■□□□□ 0.84
TPM1-216ENST00000558910 FAM9AQ8IZU1 332 aaPredicted RBP20.24■□□□□ 0.83
TPM1-216ENST00000558910 SHROOM2Q13796 1616 aa20.22■□□□□ 0.83
TPM1-216ENST00000558910 KIAA0586Q9BVV6 1533 aa20.2■□□□□ 0.82
TPM1-216ENST00000558910 RAPGEF2Q9Y4G8 1499 aa20.17■□□□□ 0.82
TPM1-216ENST00000558910 EHMT2Q96KQ7 1210 aa20.14■□□□□ 0.81
TPM1-216ENST00000558910 CSRNP3Q8WYN3 585 aa20.08■□□□□ 0.81
TPM1-216ENST00000558910 IQGAP2Q13576 1575 aa20.08■□□□□ 0.8
TPM1-216ENST00000558910 RANGAP1P46060 587 aaPredicted RBP20.07■□□□□ 0.8
TPM1-216ENST00000558910 NPM1P06748 294 aaKnown RBP eCLIP20.05■□□□□ 0.8
TPM1-216ENST00000558910 CARMIL2Q6F5E8 1435 aa20.04■□□□□ 0.8
TPM1-216ENST00000558910 PTPRGP23470 1445 aa20.03■□□□□ 0.8
TPM1-216ENST00000558910 PRXQ9BXM0 1461 aa20■□□□□ 0.79
TPM1-216ENST00000558910 TNIKQ9UKE5 1360 aa19.99■□□□□ 0.79
TPM1-216ENST00000558910 P3H3Q8IVL6 736 aa19.99■□□□□ 0.79
TPM1-216ENST00000558910 SPINK5Q9NQ38 1064 aaPredicted RBP19.99■□□□□ 0.79
TPM1-216ENST00000558910 DISP1Q96F81 1524 aa19.97■□□□□ 0.79
TPM1-216ENST00000558910 ADCY10Q96PN6 1610 aa19.95■□□□□ 0.78
TPM1-216ENST00000558910 FOXD4L1Q9NU39 408 aa19.93■□□□□ 0.78
TPM1-216ENST00000558910 CTTNBP2Q8WZ74 1663 aa19.93■□□□□ 0.78
TPM1-216ENST00000558910 UGGT2Q9NYU1 1516 aa19.92■□□□□ 0.78
TPM1-216ENST00000558910 FAM69CQ0P6D2 419 aa19.91■□□□□ 0.78
TPM1-216ENST00000558910 CAPN15O75808 1086 aa19.9■□□□□ 0.78
TPM1-216ENST00000558910 EEA1Q15075 1411 aa19.9■□□□□ 0.78
TPM1-216ENST00000558910 ARID3CA6NKF2 412 aa19.89■□□□□ 0.77
TPM1-216ENST00000558910 KIAA0556O60303 1618 aa19.89■□□□□ 0.77
TPM1-216ENST00000558910 MYCNP04198 464 aaPredicted RBP19.89■□□□□ 0.77
TPM1-216ENST00000558910 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.86■□□□□ 0.77
TPM1-216ENST00000558910 HNRNPUL2Q1KMD3 747 aaKnown RBP19.86■□□□□ 0.77
TPM1-216ENST00000558910 UACAQ9BZF9 1416 aa19.85■□□□□ 0.77
TPM1-216ENST00000558910 ZBTB22O15209 634 aa19.84■□□□□ 0.77
TPM1-216ENST00000558910 UBTFP17480 764 aaKnown RBP19.84■□□□□ 0.77
TPM1-216ENST00000558910 GOLGA3Q08378 1498 aa19.82■□□□□ 0.76
TPM1-216ENST00000558910 PLB1Q6P1J6 1458 aa19.8■□□□□ 0.76
TPM1-216ENST00000558910 ABCC2Q92887 1545 aa19.8■□□□□ 0.76
TPM1-216ENST00000558910 SAMD1Q6SPF0 538 aaPredicted RBP19.79■□□□□ 0.76
TPM1-216ENST00000558910 MAPKBP1O60336 1514 aa19.77■□□□□ 0.76
TPM1-216ENST00000558910 ABCC10Q5T3U5 1492 aa19.77■□□□□ 0.76
TPM1-216ENST00000558910 KIF13AQ9H1H9 1805 aa19.76■□□□□ 0.75
TPM1-216ENST00000558910 APLP2Q06481 763 aa19.76■□□□□ 0.75
TPM1-216ENST00000558910 ASXL2Q76L83 1435 aa19.76■□□□□ 0.75
TPM1-216ENST00000558910 UHRF1BP1LA0JNW5 1464 aa19.73■□□□□ 0.75
TPM1-216ENST00000558910 DIP2BQ9P265 1576 aa19.73■□□□□ 0.75
TPM1-216ENST00000558910 KIF21BO75037 1637 aa19.73■□□□□ 0.75
TPM1-216ENST00000558910 FHOD3Q2V2M9 1422 aa19.72■□□□□ 0.75
TPM1-216ENST00000558910 KCNH8Q96L42 1107 aa19.72■□□□□ 0.75
TPM1-216ENST00000558910 TSPOAP1O95153 1857 aa19.71■□□□□ 0.75
TPM1-216ENST00000558910 ZCCHC11Q5TAX3 1644 aaKnown RBP19.69■□□□□ 0.74
TPM1-216ENST00000558910 KDM5BQ9UGL1 1544 aa19.67■□□□□ 0.74
TPM1-216ENST00000558910 DSG3P32926 999 aa19.67■□□□□ 0.74
TPM1-216ENST00000558910 ATP1B4Q9UN42 357 aaPredicted RBP19.66■□□□□ 0.74
TPM1-216ENST00000558910 ABCA8O94911 1581 aa19.66■□□□□ 0.74
TPM1-216ENST00000558910 SAMD9Q5K651 1589 aa19.65■□□□□ 0.74
TPM1-216ENST00000558910 ZNF219Q9P2Y4 722 aaPredicted RBP19.62■□□□□ 0.73
TPM1-216ENST00000558910 EPRSP07814 1512 aaKnown RBP19.6■□□□□ 0.73
TPM1-216ENST00000558910 WDR7Q9Y4E6 1490 aa19.59■□□□□ 0.73
TPM1-216ENST00000558910 ATP10BO94823 1461 aa19.56■□□□□ 0.72
TPM1-216ENST00000558910 RAPGEF6Q8TEU7 1601 aa19.56■□□□□ 0.72
TPM1-216ENST00000558910 ILDR1Q86SU0 546 aaPredicted RBP19.53■□□□□ 0.72
TPM1-216ENST00000558910 EFCAB5A4FU69 1503 aa19.52■□□□□ 0.72
TPM1-216ENST00000558910 ABCB7O75027 752 aa19.52■□□□□ 0.72
TPM1-216ENST00000558910 KDM6BO15054 1643 aa19.51■□□□□ 0.71
TPM1-216ENST00000558910 GLI2P10070 1586 aa19.51■□□□□ 0.71
TPM1-216ENST00000558910 NUP153P49790 1475 aaKnown RBP19.5■□□□□ 0.71
TPM1-216ENST00000558910 ARHGAP35Q9NRY4 1499 aa19.5■□□□□ 0.71
TPM1-216ENST00000558910 CD109Q6YHK3 1445 aa19.48■□□□□ 0.71
TPM1-216ENST00000558910 ATF5Q9Y2D1 282 aaPredicted RBP19.47■□□□□ 0.71
TPM1-216ENST00000558910 PPRC1Q5VV67 1664 aaKnown RBP19.46■□□□□ 0.71
TPM1-216ENST00000558910 MAP3K4Q9Y6R4 1608 aa19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms