RNA–Protein interactions for RNA: ENST00000558880.1

TRAF3-206, Transcript of TNF receptor associated factor 3, humanhuman

TSL 3

Gene TRAF3, Length 374 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-206ENST00000558880 PITPNM1O00562 1244 aa12.84□□□□□ -0.35
TRAF3-206ENST00000558880 CADPSQ9ULU8 1353 aa12.82□□□□□ -0.36
TRAF3-206ENST00000558880 CLEC11AQ9Y240 323 aa12.82□□□□□ -0.36
TRAF3-206ENST00000558880 CFTRP13569 1480 aa12.82□□□□□ -0.36
TRAF3-206ENST00000558880 LAMC3Q9Y6N6 1575 aa12.81□□□□□ -0.36
TRAF3-206ENST00000558880 CHRDL2Q6WN34 429 aa12.8□□□□□ -0.36
TRAF3-206ENST00000558880 SPDYE1Q8NFV5 336 aaPredicted RBP12.79□□□□□ -0.36
TRAF3-206ENST00000558880 PDS5BQ9NTI5 1447 aa12.79□□□□□ -0.36
TRAF3-206ENST00000558880 PROM2Q8N271 834 aa12.72□□□□□ -0.37
TRAF3-206ENST00000558880 MRC2Q9UBG0 1479 aa12.72□□□□□ -0.37
TRAF3-206ENST00000558880 WDR62O43379 1518 aa12.67□□□□□ -0.38
TRAF3-206ENST00000558880 RIMBP3CA6NJZ7 1639 aa12.66□□□□□ -0.38
TRAF3-206ENST00000558880 RIMBP3BA6NNM3 1639 aa12.66□□□□□ -0.38
TRAF3-206ENST00000558880 RIMBP3Q9UFD9 1639 aa12.66□□□□□ -0.38
TRAF3-206ENST00000558880 FANCD2Q9BXW9 1451 aa12.65□□□□□ -0.38
TRAF3-206ENST00000558880 PRR29P0C7W0 189 aa12.63□□□□□ -0.39
TRAF3-206ENST00000558880 PIP4P2Q8N4L2 257 aa12.62□□□□□ -0.39
TRAF3-206ENST00000558880 STAG3Q9UJ98 1225 aa12.61□□□□□ -0.39
TRAF3-206ENST00000558880 FXR2P51116 673 aaKnown RBP eCLIP12.58□□□□□ -0.4
TRAF3-206ENST00000558880 CEP164Q9UPV0 1460 aa12.58□□□□□ -0.4
TRAF3-206ENST00000558880 POTEHQ6S545 545 aa12.57□□□□□ -0.4
TRAF3-206ENST00000558880 URB2Q14146 1524 aaKnown RBP12.56□□□□□ -0.4
TRAF3-206ENST00000558880 ARHGEF11O15085 1522 aa12.55□□□□□ -0.4
TRAF3-206ENST00000558880 CYB5RLQ6IPT4 315 aa12.54□□□□□ -0.4
TRAF3-206ENST00000558880 CHADLQ6NUI6 762 aa12.54□□□□□ -0.4
TRAF3-206ENST00000558880 ABCC8Q09428 1581 aa12.53□□□□□ -0.4
TRAF3-206ENST00000558880 PRDM2Q13029 1718 aa12.53□□□□□ -0.4
TRAF3-206ENST00000558880 PRKAR2AP13861 404 aaKnown RBP12.52□□□□□ -0.41
TRAF3-206ENST00000558880 CUX1P39880 1505 aa12.52□□□□□ -0.41
TRAF3-206ENST00000558880 TOPBP1Q92547 1522 aa12.49□□□□□ -0.41
TRAF3-206ENST00000558880 WRNQ14191 1432 aaPredicted RBP eCLIP12.49□□□□□ -0.41
TRAF3-206ENST00000558880 SYNJ1O43426 1573 aa12.47□□□□□ -0.41
TRAF3-206ENST00000558880 DNMBPQ6XZF7 1577 aa12.45□□□□□ -0.42
TRAF3-206ENST00000558880 CREBZFQ9NS37 354 aa12.44□□□□□ -0.42
TRAF3-206ENST00000558880 FBXO3Q9UK99 471 aa12.43□□□□□ -0.42
TRAF3-206ENST00000558880 POLA1P09884 1462 aaPredicted RBP12.42□□□□□ -0.42
TRAF3-206ENST00000558880 TOP2BQ02880 1626 aa12.42□□□□□ -0.42
TRAF3-206ENST00000558880 FGD5Q6ZNL6 1462 aa12.4□□□□□ -0.42
TRAF3-206ENST00000558880 BIVM-ERCC5R4GMW8 1640 aa12.4□□□□□ -0.42
TRAF3-206ENST00000558880 ZNF608Q9ULD9 1512 aaPredicted RBP12.39□□□□□ -0.43
TRAF3-206ENST00000558880 MIER1Q8N108 512 aa12.39□□□□□ -0.43
TRAF3-206ENST00000558880 ARAP1Q96P48 1450 aa12.39□□□□□ -0.43
TRAF3-206ENST00000558880 RAD54L2Q9Y4B4 1467 aa12.38□□□□□ -0.43
TRAF3-206ENST00000558880 PLCD3Q8N3E9 789 aa12.35□□□□□ -0.43
TRAF3-206ENST00000558880 TARBP1Q13395 1621 aaKnown RBP12.34□□□□□ -0.43
TRAF3-206ENST00000558880 SOGA1O94964 1423 aa12.34□□□□□ -0.43
TRAF3-206ENST00000558880 FARP1Q9Y4F1 1045 aaPredicted RBP12.33□□□□□ -0.44
TRAF3-206ENST00000558880 CHD1O14646 1710 aa12.32□□□□□ -0.44
TRAF3-206ENST00000558880 IFT140Q96RY7 1462 aa12.32□□□□□ -0.44
TRAF3-206ENST00000558880 VASPP50552 380 aaPredicted RBP12.31□□□□□ -0.44
TRAF3-206ENST00000558880 ABCA10Q8WWZ4 1543 aa12.31□□□□□ -0.44
TRAF3-206ENST00000558880 RUSC2Q8N2Y8 1516 aa12.28□□□□□ -0.44
TRAF3-206ENST00000558880 EIF4G3O43432 1585 aaKnown RBP12.28□□□□□ -0.44
TRAF3-206ENST00000558880 HAX1O00165 279 aa12.28□□□□□ -0.44
TRAF3-206ENST00000558880 PLEKHG5O94827 1062 aa12.28□□□□□ -0.44
TRAF3-206ENST00000558880 TDRD9Q8NDG6 1382 aaKnown RBP12.28□□□□□ -0.44
TRAF3-206ENST00000558880 MNX1P50219 401 aaPredicted RBP12.27□□□□□ -0.45
TRAF3-206ENST00000558880 AQRO60306 1485 aaKnown RBP eCLIP12.27□□□□□ -0.45
TRAF3-206ENST00000558880 WDR97A6NE52 1622 aa12.26□□□□□ -0.45
TRAF3-206ENST00000558880 ABCA5Q8WWZ7 1642 aa12.21□□□□□ -0.46
TRAF3-206ENST00000558880 IGF1RP08069 1367 aa12.2□□□□□ -0.46
TRAF3-206ENST00000558880 NPM1P06748 294 aaKnown RBP eCLIP12.19□□□□□ -0.46
TRAF3-206ENST00000558880 GAPVD1Q14C86 1478 aa12.19□□□□□ -0.46
TRAF3-206ENST00000558880 EVX2Q03828 476 aa12.18□□□□□ -0.46
TRAF3-206ENST00000558880 KLHL34Q8N239 644 aa12.18□□□□□ -0.46
TRAF3-206ENST00000558880 KIF27Q86VH2 1401 aa12.18□□□□□ -0.46
TRAF3-206ENST00000558880 ILDR1Q86SU0 546 aaPredicted RBP12.17□□□□□ -0.46
TRAF3-206ENST00000558880 C19orf67A6NJJ6 358 aa12.16□□□□□ -0.46
TRAF3-206ENST00000558880 CD44P16070 742 aaKnown RBP12.15□□□□□ -0.46
TRAF3-206ENST00000558880 GRIN2BQ13224 1484 aa12.14□□□□□ -0.47
TRAF3-206ENST00000558880 IFNLR1Q8IU57 520 aaPredicted RBP12.14□□□□□ -0.47
TRAF3-206ENST00000558880 ZBTB47Q9UFB7 747 aaPredicted RBP12.14□□□□□ -0.47
TRAF3-206ENST00000558880 SNAPC4Q5SXM2 1469 aa12.12□□□□□ -0.47
TRAF3-206ENST00000558880 ERICH3Q5RHP9 1530 aa12.11□□□□□ -0.47
TRAF3-206ENST00000558880 PRXQ9BXM0 1461 aa12.11□□□□□ -0.47
TRAF3-206ENST00000558880 CHMP7Q8WUX9 453 aaPredicted RBP12.1□□□□□ -0.47
TRAF3-206ENST00000558880 CLASP1Q7Z460 1538 aa12.1□□□□□ -0.47
TRAF3-206ENST00000558880 FAM9AQ8IZU1 332 aaPredicted RBP12.09□□□□□ -0.47
TRAF3-206ENST00000558880 EEA1Q15075 1411 aa12.09□□□□□ -0.47
TRAF3-206ENST00000558880 TSPYL2Q9H2G4 693 aaPredicted RBP12.08□□□□□ -0.48
TRAF3-206ENST00000558880 MAGI1Q96QZ7 1491 aaPredicted RBP12.08□□□□□ -0.48
TRAF3-206ENST00000558880 CARMIL1Q5VZK9 1371 aa12.07□□□□□ -0.48
TRAF3-206ENST00000558880 RASEFQ8IZ41 740 aa12.07□□□□□ -0.48
TRAF3-206ENST00000558880 ZRANB1Q9UGI0 708 aa12.07□□□□□ -0.48
TRAF3-206ENST00000558880 ADAMTS12P58397 1594 aa12.06□□□□□ -0.48
TRAF3-206ENST00000558880 FHAD1B1AJZ9 1412 aa12.06□□□□□ -0.48
TRAF3-206ENST00000558880 NUBP1P53384 320 aa12.05□□□□□ -0.48
TRAF3-206ENST00000558880 PBRM1Q86U86 1689 aa12.05□□□□□ -0.48
TRAF3-206ENST00000558880 SYNJ2O15056 1496 aa12.04□□□□□ -0.48
TRAF3-206ENST00000558880 PAK3O75914 559 aaPredicted RBP12.04□□□□□ -0.48
TRAF3-206ENST00000558880 RAPGEF2Q9Y4G8 1499 aa12.02□□□□□ -0.48
TRAF3-206ENST00000558880 SP7Q8TDD2 431 aaPredicted RBP12.01□□□□□ -0.49
TRAF3-206ENST00000558880 GRIN2AQ12879 1464 aa12.01□□□□□ -0.49
TRAF3-206ENST00000558880 SPOCK2Q92563 424 aa12□□□□□ -0.49
TRAF3-206ENST00000558880 NUP160Q12769 1436 aa12□□□□□ -0.49
TRAF3-206ENST00000558880 CUL7Q14999 1698 aa11.98□□□□□ -0.49
TRAF3-206ENST00000558880 PHF12Q96QT6 1004 aa11.97□□□□□ -0.49
TRAF3-206ENST00000558880 DCAF8Q5TAQ9 597 aa11.96□□□□□ -0.49
TRAF3-206ENST00000558880 FAM212AQ96EL1 285 aa11.96□□□□□ -0.49
TRAF3-206ENST00000558880 KIF21BO75037 1637 aa11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms