RNA–Protein interactions for RNA: ENST00000558880.1

TRAF3-206, Transcript of TNF receptor associated factor 3, humanhuman

TSL 3

Gene TRAF3, Length 374 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-206ENST00000558880 AEBP2Q6ZN18 517 aaPredicted RBP23.55■■□□□ 1.36
TRAF3-206ENST00000558880 CHIC1Q5VXU3 224 aa22.79■■□□□ 1.24
TRAF3-206ENST00000558880 PHF23Q9BUL5 403 aaPredicted RBP20.07■□□□□ 0.8
TRAF3-206ENST00000558880 SENP3Q9H4L4 574 aaPredicted RBP19.94■□□□□ 0.78
TRAF3-206ENST00000558880 FOXD1Q16676 465 aa18.57■□□□□ 0.56
TRAF3-206ENST00000558880 PLPPR3Q6T4P5 718 aa18.42■□□□□ 0.54
TRAF3-206ENST00000558880 PPP6R1Q9UPN7 881 aa17.79■□□□□ 0.44
TRAF3-206ENST00000558880 ADRA2BP18089 450 aa17.78■□□□□ 0.44
TRAF3-206ENST00000558880 PIAS4Q8N2W9 510 aaPredicted RBP17.49■□□□□ 0.39
TRAF3-206ENST00000558880 NISCHQ9Y2I1 1504 aa17.31■□□□□ 0.36
TRAF3-206ENST00000558880 MSH5O43196 834 aa17.12■□□□□ 0.33
TRAF3-206ENST00000558880 PPP4R3CPQ6ZMV5 832 aa16.26■□□□□ 0.19
TRAF3-206ENST00000558880 MAPK8IP2Q13387 824 aaPredicted RBP16.19■□□□□ 0.18
TRAF3-206ENST00000558880 SCAF1Q9H7N4 1312 aaKnown RBP16.15■□□□□ 0.18
TRAF3-206ENST00000558880 POTEDQ86YR6 584 aa15.92■□□□□ 0.14
TRAF3-206ENST00000558880 DMRT2Q9Y5R5 561 aa15.9■□□□□ 0.14
TRAF3-206ENST00000558880 CNKSR2Q8WXI2 1034 aa15.79■□□□□ 0.12
TRAF3-206ENST00000558880 KCNA4P22459 653 aa15.75■□□□□ 0.11
TRAF3-206ENST00000558880 NCBP3Q53F19 620 aaKnown RBP15.74■□□□□ 0.11
TRAF3-206ENST00000558880 NPM3O75607 178 aaKnown RBP15.56■□□□□ 0.08
TRAF3-206ENST00000558880 RNF216Q9NWF9 866 aaPredicted RBP15.5■□□□□ 0.07
TRAF3-206ENST00000558880 HOXD11P31277 338 aaPredicted RBP15.48■□□□□ 0.07
TRAF3-206ENST00000558880 ABCC9O60706 1549 aa15.39■□□□□ 0.05
TRAF3-206ENST00000558880 DCAF8L1A6NGE4 600 aa15.33■□□□□ 0.04
TRAF3-206ENST00000558880 CCDC180Q9P1Z9 1646 aa15.15■□□□□ 0.02
TRAF3-206ENST00000558880 DNAJC5BQ9UF47 199 aa14.97□□□□□ -0.01
TRAF3-206ENST00000558880 SLC4A1APQ9BWU0 796 aaKnown RBP14.95□□□□□ -0.02
TRAF3-206ENST00000558880 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.83□□□□□ -0.04
TRAF3-206ENST00000558880 SLC4A2P04920 1241 aa14.74□□□□□ -0.05
TRAF3-206ENST00000558880 RNF39Q9H2S5 420 aa14.68□□□□□ -0.06
TRAF3-206ENST00000558880 U3KPZ7 1027 aaPredicted RBP14.56□□□□□ -0.08
TRAF3-206ENST00000558880 ZBTB22O15209 634 aa14.5□□□□□ -0.09
TRAF3-206ENST00000558880 ZCCHC6Q5VYS8 1495 aaKnown RBP14.5□□□□□ -0.09
TRAF3-206ENST00000558880 FOXD4L1Q9NU39 408 aa14.49□□□□□ -0.09
TRAF3-206ENST00000558880 CACNB1Q02641 598 aaPredicted RBP14.46□□□□□ -0.09
TRAF3-206ENST00000558880 C1QBPQ07021 282 aaKnown RBP14.46□□□□□ -0.09
TRAF3-206ENST00000558880 EHMT2Q96KQ7 1210 aa14.43□□□□□ -0.1
TRAF3-206ENST00000558880 MYCNP04198 464 aaPredicted RBP14.35□□□□□ -0.11
TRAF3-206ENST00000558880 RB1CC1Q8TDY2 1594 aa14.34□□□□□ -0.11
TRAF3-206ENST00000558880 DCAF1Q9Y4B6 1507 aa14.33□□□□□ -0.12
TRAF3-206ENST00000558880 MYO15BQ96JP2 1530 aa14.29□□□□□ -0.12
TRAF3-206ENST00000558880 PABPN1Q86U42 306 aaKnown RBP eCLIP14.27□□□□□ -0.13
TRAF3-206ENST00000558880 DCAF8L2P0C7V8 631 aa14.26□□□□□ -0.13
TRAF3-206ENST00000558880 CSRNP3Q8WYN3 585 aa14.26□□□□□ -0.13
TRAF3-206ENST00000558880 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.24□□□□□ -0.13
TRAF3-206ENST00000558880 HNRNPUL2Q1KMD3 747 aaKnown RBP14.24□□□□□ -0.13
TRAF3-206ENST00000558880 SPINK5Q9NQ38 1064 aaPredicted RBP14.24□□□□□ -0.13
TRAF3-206ENST00000558880 NACADO15069 1562 aa14.23□□□□□ -0.13
TRAF3-206ENST00000558880 SAMD1Q6SPF0 538 aaPredicted RBP14.21□□□□□ -0.13
TRAF3-206ENST00000558880 CAPN15O75808 1086 aa14.18□□□□□ -0.14
TRAF3-206ENST00000558880 APLP2Q06481 763 aa14.12□□□□□ -0.15
TRAF3-206ENST00000558880 TRHP20396 242 aaPredicted RBP14.1□□□□□ -0.15
TRAF3-206ENST00000558880 UNC13AQ9UPW8 1703 aa14.08□□□□□ -0.16
TRAF3-206ENST00000558880 DNAJC5Q9H3Z4 198 aa14.07□□□□□ -0.16
TRAF3-206ENST00000558880 ATF5Q9Y2D1 282 aaPredicted RBP14.06□□□□□ -0.16
TRAF3-206ENST00000558880 ZNF219Q9P2Y4 722 aaPredicted RBP13.99□□□□□ -0.17
TRAF3-206ENST00000558880 BICRAQ9NZM4 1560 aa13.96□□□□□ -0.17
TRAF3-206ENST00000558880 ABCB7O75027 752 aa13.94□□□□□ -0.18
TRAF3-206ENST00000558880 DSG3P32926 999 aa13.94□□□□□ -0.18
TRAF3-206ENST00000558880 ATXN8OSP0DMR3 200 aa13.92□□□□□ -0.18
TRAF3-206ENST00000558880 SCRIBQ14160 1630 aa13.89□□□□□ -0.19
TRAF3-206ENST00000558880 CECR2Q9BXF3 1484 aa13.88□□□□□ -0.19
TRAF3-206ENST00000558880 CC2D2AQ9P2K1 1620 aa13.85□□□□□ -0.19
TRAF3-206ENST00000558880 SHROOM4Q9ULL8 1493 aa13.81□□□□□ -0.2
TRAF3-206ENST00000558880 POLA2Q14181 598 aa13.8□□□□□ -0.2
TRAF3-206ENST00000558880 EIF4G1Q04637 1599 aaKnown RBP13.66□□□□□ -0.22
TRAF3-206ENST00000558880 ZBTB12Q9Y330 459 aaPredicted RBP13.48□□□□□ -0.25
TRAF3-206ENST00000558880 FBLN2P98095 1184 aa13.41□□□□□ -0.26
TRAF3-206ENST00000558880 MKRN4PQ13434 485 aaPredicted RBP13.41□□□□□ -0.26
TRAF3-206ENST00000558880 CUX2O14529 1486 aa13.41□□□□□ -0.26
TRAF3-206ENST00000558880 MROH2BQ7Z745 1585 aa13.38□□□□□ -0.27
TRAF3-206ENST00000558880 OSCARQ8IYS5 282 aa13.36□□□□□ -0.27
TRAF3-206ENST00000558880 RSF1Q96T23 1441 aaPredicted RBP13.34□□□□□ -0.27
TRAF3-206ENST00000558880 SMARCA4P51532 1647 aa13.33□□□□□ -0.28
TRAF3-206ENST00000558880 BAZ1AQ9NRL2 1556 aaPredicted RBP13.32□□□□□ -0.28
TRAF3-206ENST00000558880 ERCC6Q03468 1493 aa13.32□□□□□ -0.28
TRAF3-206ENST00000558880 TRIM41Q8WV44 630 aa13.31□□□□□ -0.28
TRAF3-206ENST00000558880 ATAD2BQ9ULI0 1458 aa13.26□□□□□ -0.29
TRAF3-206ENST00000558880 PEG3Q9GZU2 1588 aa13.24□□□□□ -0.29
TRAF3-206ENST00000558880 RBM42Q9BTD8 480 aaKnown RBP13.24□□□□□ -0.29
TRAF3-206ENST00000558880 NCAPD3P42695 1498 aa13.22□□□□□ -0.29
TRAF3-206ENST00000558880 WIZO95785 1651 aa13.18□□□□□ -0.3
TRAF3-206ENST00000558880 SMARCA2P51531 1590 aa13.15□□□□□ -0.3
TRAF3-206ENST00000558880 SPDYE2BA6NHP3 402 aa13.12□□□□□ -0.31
TRAF3-206ENST00000558880 SPDYE6P0CI01 402 aa13.12□□□□□ -0.31
TRAF3-206ENST00000558880 SPDYE2Q495Y8 402 aa13.12□□□□□ -0.31
TRAF3-206ENST00000558880 HMGXB3Q12766 1538 aa13.11□□□□□ -0.31
TRAF3-206ENST00000558880 ZNF692Q9BU19 519 aaPredicted RBP13.1□□□□□ -0.31
TRAF3-206ENST00000558880 SUPT5HO00267 1087 aaKnown RBP13.09□□□□□ -0.31
TRAF3-206ENST00000558880 BAZ1BQ9UIG0 1483 aaKnown RBP13.08□□□□□ -0.32
TRAF3-206ENST00000558880 NESP48681 1621 aa13.07□□□□□ -0.32
TRAF3-206ENST00000558880 TOP2AP11388 1531 aaKnown RBP13.05□□□□□ -0.32
TRAF3-206ENST00000558880 AKT1S1Q96B36 256 aa13.05□□□□□ -0.32
TRAF3-206ENST00000558880 SPDYE4A6NLX3 237 aa13.02□□□□□ -0.33
TRAF3-206ENST00000558880 SSUH2Q9Y2M2 353 aa13.01□□□□□ -0.33
TRAF3-206ENST00000558880 THOC2Q8NI27 1593 aaKnown RBP13□□□□□ -0.33
TRAF3-206ENST00000558880 REM2Q8IYK8 340 aaPredicted RBP12.97□□□□□ -0.33
TRAF3-206ENST00000558880 CCDC88BA6NC98 1476 aa12.95□□□□□ -0.34
TRAF3-206ENST00000558880 FKBP8Q14318 412 aa12.93□□□□□ -0.34
TRAF3-206ENST00000558880 KIF21AQ7Z4S6 1674 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms