RNA–Protein interactions for RNA: ENST00000558771.1

LRRC28-208, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-208ENST00000558771 FKBP8Q14318 412 aa10.72□□□□□ -0.69
LRRC28-208ENST00000558771 CADPSQ9ULU8 1353 aa10.72□□□□□ -0.69
LRRC28-208ENST00000558771 MRC2Q9UBG0 1479 aa10.72□□□□□ -0.69
LRRC28-208ENST00000558771 CLEC11AQ9Y240 323 aa10.71□□□□□ -0.69
LRRC28-208ENST00000558771 WDR62O43379 1518 aa10.7□□□□□ -0.7
LRRC28-208ENST00000558771 PROM2Q8N271 834 aa10.65□□□□□ -0.7
LRRC28-208ENST00000558771 CEP164Q9UPV0 1460 aa10.63□□□□□ -0.71
LRRC28-208ENST00000558771 WIZO95785 1651 aa10.61□□□□□ -0.71
LRRC28-208ENST00000558771 STAG3Q9UJ98 1225 aa10.61□□□□□ -0.71
LRRC28-208ENST00000558771 PRR29P0C7W0 189 aa10.6□□□□□ -0.71
LRRC28-208ENST00000558771 FXR2P51116 673 aaKnown RBP eCLIP10.6□□□□□ -0.71
LRRC28-208ENST00000558771 PIP4P2Q8N4L2 257 aa10.6□□□□□ -0.71
LRRC28-208ENST00000558771 FANCD2Q9BXW9 1451 aa10.6□□□□□ -0.71
LRRC28-208ENST00000558771 CFTRP13569 1480 aa10.55□□□□□ -0.72
LRRC28-208ENST00000558771 URB2Q14146 1524 aaKnown RBP10.53□□□□□ -0.72
LRRC28-208ENST00000558771 RIMBP3CA6NJZ7 1639 aa10.52□□□□□ -0.73
LRRC28-208ENST00000558771 RIMBP3BA6NNM3 1639 aa10.52□□□□□ -0.73
LRRC28-208ENST00000558771 RIMBP3Q9UFD9 1639 aa10.52□□□□□ -0.73
LRRC28-208ENST00000558771 PRKAR2AP13861 404 aaKnown RBP10.49□□□□□ -0.73
LRRC28-208ENST00000558771 CHADLQ6NUI6 762 aa10.46□□□□□ -0.73
LRRC28-208ENST00000558771 ARHGEF11O15085 1522 aa10.46□□□□□ -0.74
LRRC28-208ENST00000558771 TOP2AP11388 1531 aaKnown RBP10.45□□□□□ -0.74
LRRC28-208ENST00000558771 ZNF608Q9ULD9 1512 aaPredicted RBP10.45□□□□□ -0.74
LRRC28-208ENST00000558771 SP7Q8TDD2 431 aaPredicted RBP10.44□□□□□ -0.74
LRRC28-208ENST00000558771 RSF1Q96T23 1441 aaPredicted RBP10.43□□□□□ -0.74
LRRC28-208ENST00000558771 IFT140Q96RY7 1462 aa10.42□□□□□ -0.74
LRRC28-208ENST00000558771 PRDM2Q13029 1718 aa10.41□□□□□ -0.74
LRRC28-208ENST00000558771 CREBZFQ9NS37 354 aa10.41□□□□□ -0.74
LRRC28-208ENST00000558771 CYB5RLQ6IPT4 315 aa10.4□□□□□ -0.74
LRRC28-208ENST00000558771 FBXO3Q9UK99 471 aa10.39□□□□□ -0.75
LRRC28-208ENST00000558771 TOPBP1Q92547 1522 aa10.38□□□□□ -0.75
LRRC28-208ENST00000558771 EIF4G3O43432 1585 aaKnown RBP10.37□□□□□ -0.75
LRRC28-208ENST00000558771 ARAP1Q96P48 1450 aa10.35□□□□□ -0.75
LRRC28-208ENST00000558771 CHD1O14646 1710 aa10.34□□□□□ -0.75
LRRC28-208ENST00000558771 MIER1Q8N108 512 aa10.34□□□□□ -0.75
LRRC28-208ENST00000558771 FARP1Q9Y4F1 1045 aaPredicted RBP10.34□□□□□ -0.75
LRRC28-208ENST00000558771 CCDC88BA6NC98 1476 aa10.34□□□□□ -0.75
LRRC28-208ENST00000558771 ABCC8Q09428 1581 aa10.32□□□□□ -0.76
LRRC28-208ENST00000558771 AQRO60306 1485 aaKnown RBP eCLIP10.32□□□□□ -0.76
LRRC28-208ENST00000558771 DNMBPQ6XZF7 1577 aa10.31□□□□□ -0.76
LRRC28-208ENST00000558771 HAX1O00165 279 aa10.31□□□□□ -0.76
LRRC28-208ENST00000558771 TARBP1Q13395 1621 aaKnown RBP10.3□□□□□ -0.76
LRRC28-208ENST00000558771 MNX1P50219 401 aaPredicted RBP10.29□□□□□ -0.76
LRRC28-208ENST00000558771 PLCD3Q8N3E9 789 aa10.29□□□□□ -0.76
LRRC28-208ENST00000558771 PLEKHG5O94827 1062 aa10.28□□□□□ -0.76
LRRC28-208ENST00000558771 POLA1P09884 1462 aaPredicted RBP10.25□□□□□ -0.77
LRRC28-208ENST00000558771 C19orf67A6NJJ6 358 aa10.24□□□□□ -0.77
LRRC28-208ENST00000558771 NPM1P06748 294 aaKnown RBP eCLIP10.24□□□□□ -0.77
LRRC28-208ENST00000558771 RAD54L2Q9Y4B4 1467 aa10.23□□□□□ -0.77
LRRC28-208ENST00000558771 VASPP50552 380 aaPredicted RBP10.23□□□□□ -0.77
LRRC28-208ENST00000558771 EVX2Q03828 476 aa10.22□□□□□ -0.77
LRRC28-208ENST00000558771 TDRD9Q8NDG6 1382 aaKnown RBP10.22□□□□□ -0.77
LRRC28-208ENST00000558771 CLASP1Q7Z460 1538 aa10.22□□□□□ -0.77
LRRC28-208ENST00000558771 SNAPC4Q5SXM2 1469 aa10.21□□□□□ -0.78
LRRC28-208ENST00000558771 SOGA1O94964 1423 aa10.2□□□□□ -0.78
LRRC28-208ENST00000558771 ZBTB47Q9UFB7 747 aaPredicted RBP10.18□□□□□ -0.78
LRRC28-208ENST00000558771 SYNJ1O43426 1573 aa10.18□□□□□ -0.78
LRRC28-208ENST00000558771 CD44P16070 742 aaKnown RBP10.17□□□□□ -0.78
LRRC28-208ENST00000558771 CHMP7Q8WUX9 453 aaPredicted RBP10.17□□□□□ -0.78
LRRC28-208ENST00000558771 WDR97A6NE52 1622 aa10.16□□□□□ -0.78
LRRC28-208ENST00000558771 FGD5Q6ZNL6 1462 aa10.16□□□□□ -0.78
LRRC28-208ENST00000558771 MAGI1Q96QZ7 1491 aaPredicted RBP10.16□□□□□ -0.78
LRRC28-208ENST00000558771 SYNJ2O15056 1496 aa10.13□□□□□ -0.79
LRRC28-208ENST00000558771 GRIN2BQ13224 1484 aa10.13□□□□□ -0.79
LRRC28-208ENST00000558771 KLHL34Q8N239 644 aa10.13□□□□□ -0.79
LRRC28-208ENST00000558771 GAPVD1Q14C86 1478 aa10.12□□□□□ -0.79
LRRC28-208ENST00000558771 CUX1P39880 1505 aa10.12□□□□□ -0.79
LRRC28-208ENST00000558771 ZRANB1Q9UGI0 708 aa10.11□□□□□ -0.79
LRRC28-208ENST00000558771 IFNLR1Q8IU57 520 aaPredicted RBP10.1□□□□□ -0.79
LRRC28-208ENST00000558771 PAK3O75914 559 aaPredicted RBP10.09□□□□□ -0.79
LRRC28-208ENST00000558771 PBRM1Q86U86 1689 aa10.09□□□□□ -0.79
LRRC28-208ENST00000558771 NUBP1P53384 320 aa10.08□□□□□ -0.8
LRRC28-208ENST00000558771 RASEFQ8IZ41 740 aa10.07□□□□□ -0.8
LRRC28-208ENST00000558771 TSPYL2Q9H2G4 693 aaPredicted RBP10.06□□□□□ -0.8
LRRC28-208ENST00000558771 ERCC6L2Q5T890 1561 aa10.05□□□□□ -0.8
LRRC28-208ENST00000558771 ZNF579Q8NAF0 562 aaKnown RBP10.03□□□□□ -0.8
LRRC28-208ENST00000558771 ABCA5Q8WWZ7 1642 aa10.03□□□□□ -0.8
LRRC28-208ENST00000558771 ABCA10Q8WWZ4 1543 aa10.02□□□□□ -0.8
LRRC28-208ENST00000558771 GABBR2O75899 941 aa10.01□□□□□ -0.81
LRRC28-208ENST00000558771 SPOCK2Q92563 424 aa10.01□□□□□ -0.81
LRRC28-208ENST00000558771 GRIN2AQ12879 1464 aa10.01□□□□□ -0.81
LRRC28-208ENST00000558771 CEP170Q5SW79 1584 aa10.01□□□□□ -0.81
LRRC28-208ENST00000558771 CCDC61Q9Y6R9 512 aa9.99□□□□□ -0.81
LRRC28-208ENST00000558771 NUP160Q12769 1436 aa9.99□□□□□ -0.81
LRRC28-208ENST00000558771 CLCN6P51797 869 aa9.98□□□□□ -0.81
LRRC28-208ENST00000558771 DCAF8Q5TAQ9 597 aa9.98□□□□□ -0.81
LRRC28-208ENST00000558771 FAM212AQ96EL1 285 aa9.98□□□□□ -0.81
LRRC28-208ENST00000558771 PHF12Q96QT6 1004 aa9.98□□□□□ -0.81
LRRC28-208ENST00000558771 KIF13AQ9H1H9 1805 aa9.98□□□□□ -0.81
LRRC28-208ENST00000558771 ADAMTS12P58397 1594 aa9.97□□□□□ -0.81
LRRC28-208ENST00000558771 SHROOM2Q13796 1616 aa9.96□□□□□ -0.81
LRRC28-208ENST00000558771 FHAD1B1AJZ9 1412 aa9.93□□□□□ -0.82
LRRC28-208ENST00000558771 WRNQ14191 1432 aaPredicted RBP eCLIP9.92□□□□□ -0.82
LRRC28-208ENST00000558771 GSE1Q14687 1217 aa9.92□□□□□ -0.82
LRRC28-208ENST00000558771 KIF12Q96FN5 646 aa9.91□□□□□ -0.82
LRRC28-208ENST00000558771 PRG4Q92954 1404 aaPredicted RBP9.9□□□□□ -0.82
LRRC28-208ENST00000558771 ERICH3Q5RHP9 1530 aa9.89□□□□□ -0.83
LRRC28-208ENST00000558771 GALR2O43603 387 aaPredicted RBP9.89□□□□□ -0.83
LRRC28-208ENST00000558771 FAM69CQ0P6D2 419 aa9.89□□□□□ -0.83
LRRC28-208ENST00000558771 ABCC10Q5T3U5 1492 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms