RNA–Protein interactions for RNA: ENST00000558771.1

LRRC28-208, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-208ENST00000558771 AEBP2Q6ZN18 517 aaPredicted RBP19.75■□□□□ 0.75
LRRC28-208ENST00000558771 CHIC1Q5VXU3 224 aa19.13■□□□□ 0.65
LRRC28-208ENST00000558771 PHF23Q9BUL5 403 aaPredicted RBP16.82■□□□□ 0.28
LRRC28-208ENST00000558771 SENP3Q9H4L4 574 aaPredicted RBP16.77■□□□□ 0.28
LRRC28-208ENST00000558771 FOXD1Q16676 465 aa15.6■□□□□ 0.09
LRRC28-208ENST00000558771 PLPPR3Q6T4P5 718 aa15.46■□□□□ 0.07
LRRC28-208ENST00000558771 PPP6R1Q9UPN7 881 aa14.9□□□□□ -0.02
LRRC28-208ENST00000558771 ADRA2BP18089 450 aa14.88□□□□□ -0.03
LRRC28-208ENST00000558771 POTEDQ86YR6 584 aa14.69□□□□□ -0.06
LRRC28-208ENST00000558771 PIAS4Q8N2W9 510 aaPredicted RBP14.65□□□□□ -0.06
LRRC28-208ENST00000558771 MSH5O43196 834 aa14.43□□□□□ -0.1
LRRC28-208ENST00000558771 NISCHQ9Y2I1 1504 aa13.95□□□□□ -0.18
LRRC28-208ENST00000558771 PPP4R3CPQ6ZMV5 832 aa13.62□□□□□ -0.23
LRRC28-208ENST00000558771 SCAF1Q9H7N4 1312 aaKnown RBP13.61□□□□□ -0.23
LRRC28-208ENST00000558771 MAPK8IP2Q13387 824 aaPredicted RBP13.56□□□□□ -0.24
LRRC28-208ENST00000558771 DMRT2Q9Y5R5 561 aa13.36□□□□□ -0.27
LRRC28-208ENST00000558771 CNKSR2Q8WXI2 1034 aa13.27□□□□□ -0.29
LRRC28-208ENST00000558771 NCBP3Q53F19 620 aaKnown RBP13.21□□□□□ -0.29
LRRC28-208ENST00000558771 KCNA4P22459 653 aa13.1□□□□□ -0.31
LRRC28-208ENST00000558771 RNF216Q9NWF9 866 aaPredicted RBP13.04□□□□□ -0.32
LRRC28-208ENST00000558771 HOXD11P31277 338 aaPredicted RBP13.03□□□□□ -0.32
LRRC28-208ENST00000558771 NPM3O75607 178 aaKnown RBP13□□□□□ -0.33
LRRC28-208ENST00000558771 ABCC9O60706 1549 aa12.87□□□□□ -0.35
LRRC28-208ENST00000558771 DCAF8L1A6NGE4 600 aa12.8□□□□□ -0.36
LRRC28-208ENST00000558771 DNAJC5BQ9UF47 199 aa12.65□□□□□ -0.38
LRRC28-208ENST00000558771 CCDC180Q9P1Z9 1646 aa12.6□□□□□ -0.39
LRRC28-208ENST00000558771 CACNB1Q02641 598 aaPredicted RBP12.44□□□□□ -0.42
LRRC28-208ENST00000558771 SLC4A1APQ9BWU0 796 aaKnown RBP12.44□□□□□ -0.42
LRRC28-208ENST00000558771 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.43□□□□□ -0.42
LRRC28-208ENST00000558771 RNF39Q9H2S5 420 aa12.36□□□□□ -0.43
LRRC28-208ENST00000558771 SLC4A2P04920 1241 aa12.33□□□□□ -0.44
LRRC28-208ENST00000558771 C1QBPQ07021 282 aaKnown RBP12.21□□□□□ -0.45
LRRC28-208ENST00000558771 U3KPZ7 1027 aaPredicted RBP12.19□□□□□ -0.46
LRRC28-208ENST00000558771 RB1CC1Q8TDY2 1594 aa12.12□□□□□ -0.47
LRRC28-208ENST00000558771 FOXD4L1Q9NU39 408 aa12.1□□□□□ -0.47
LRRC28-208ENST00000558771 ZBTB22O15209 634 aa12.04□□□□□ -0.48
LRRC28-208ENST00000558771 MYCNP04198 464 aaPredicted RBP12.01□□□□□ -0.49
LRRC28-208ENST00000558771 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.98□□□□□ -0.49
LRRC28-208ENST00000558771 HNRNPUL2Q1KMD3 747 aaKnown RBP11.98□□□□□ -0.49
LRRC28-208ENST00000558771 NACADO15069 1562 aa11.97□□□□□ -0.49
LRRC28-208ENST00000558771 PABPN1Q86U42 306 aaKnown RBP eCLIP11.94□□□□□ -0.5
LRRC28-208ENST00000558771 SAMD1Q6SPF0 538 aaPredicted RBP11.93□□□□□ -0.5
LRRC28-208ENST00000558771 SPINK5Q9NQ38 1064 aaPredicted RBP11.91□□□□□ -0.5
LRRC28-208ENST00000558771 APLP2Q06481 763 aa11.89□□□□□ -0.51
LRRC28-208ENST00000558771 EHMT2Q96KQ7 1210 aa11.89□□□□□ -0.51
LRRC28-208ENST00000558771 DCAF8L2P0C7V8 631 aa11.88□□□□□ -0.51
LRRC28-208ENST00000558771 CAPN15O75808 1086 aa11.87□□□□□ -0.51
LRRC28-208ENST00000558771 UNC13AQ9UPW8 1703 aa11.86□□□□□ -0.51
LRRC28-208ENST00000558771 CSRNP3Q8WYN3 585 aa11.86□□□□□ -0.51
LRRC28-208ENST00000558771 BICRAQ9NZM4 1560 aa11.79□□□□□ -0.52
LRRC28-208ENST00000558771 TRHP20396 242 aaPredicted RBP11.78□□□□□ -0.52
LRRC28-208ENST00000558771 ZNF219Q9P2Y4 722 aaPredicted RBP11.76□□□□□ -0.53
LRRC28-208ENST00000558771 MYO15BQ96JP2 1530 aa11.72□□□□□ -0.53
LRRC28-208ENST00000558771 ATF5Q9Y2D1 282 aaPredicted RBP11.72□□□□□ -0.53
LRRC28-208ENST00000558771 DSG3P32926 999 aa11.71□□□□□ -0.53
LRRC28-208ENST00000558771 ATXN8OSP0DMR3 200 aa11.7□□□□□ -0.54
LRRC28-208ENST00000558771 ABCB7O75027 752 aa11.63□□□□□ -0.55
LRRC28-208ENST00000558771 CC2D2AQ9P2K1 1620 aa11.6□□□□□ -0.55
LRRC28-208ENST00000558771 CECR2Q9BXF3 1484 aa11.6□□□□□ -0.55
LRRC28-208ENST00000558771 SHROOM4Q9ULL8 1493 aa11.58□□□□□ -0.56
LRRC28-208ENST00000558771 POLA2Q14181 598 aa11.55□□□□□ -0.56
LRRC28-208ENST00000558771 EIF4G1Q04637 1599 aaKnown RBP11.52□□□□□ -0.57
LRRC28-208ENST00000558771 ZCCHC6Q5VYS8 1495 aaKnown RBP11.51□□□□□ -0.57
LRRC28-208ENST00000558771 DCAF1Q9Y4B6 1507 aa11.49□□□□□ -0.57
LRRC28-208ENST00000558771 SCRIBQ14160 1630 aa11.49□□□□□ -0.57
LRRC28-208ENST00000558771 DNAJC5Q9H3Z4 198 aa11.44□□□□□ -0.58
LRRC28-208ENST00000558771 POTEHQ6S545 545 aa11.4□□□□□ -0.58
LRRC28-208ENST00000558771 ZBTB12Q9Y330 459 aaPredicted RBP11.32□□□□□ -0.6
LRRC28-208ENST00000558771 FBLN2P98095 1184 aa11.22□□□□□ -0.61
LRRC28-208ENST00000558771 MKRN4PQ13434 485 aaPredicted RBP11.2□□□□□ -0.62
LRRC28-208ENST00000558771 CUX2O14529 1486 aa11.17□□□□□ -0.62
LRRC28-208ENST00000558771 RBM42Q9BTD8 480 aaKnown RBP11.15□□□□□ -0.62
LRRC28-208ENST00000558771 OSCARQ8IYS5 282 aa11.14□□□□□ -0.63
LRRC28-208ENST00000558771 ERCC6Q03468 1493 aa11.11□□□□□ -0.63
LRRC28-208ENST00000558771 NCAPD3P42695 1498 aa11.06□□□□□ -0.64
LRRC28-208ENST00000558771 SPDYE2BA6NHP3 402 aa11.02□□□□□ -0.65
LRRC28-208ENST00000558771 SPDYE6P0CI01 402 aa11.02□□□□□ -0.65
LRRC28-208ENST00000558771 SPDYE2Q495Y8 402 aa11.02□□□□□ -0.65
LRRC28-208ENST00000558771 ATAD2BQ9ULI0 1458 aa11□□□□□ -0.65
LRRC28-208ENST00000558771 AKT1S1Q96B36 256 aa10.99□□□□□ -0.65
LRRC28-208ENST00000558771 NESP48681 1621 aa10.98□□□□□ -0.65
LRRC28-208ENST00000558771 ZNF692Q9BU19 519 aaPredicted RBP10.97□□□□□ -0.65
LRRC28-208ENST00000558771 HMGXB3Q12766 1538 aa10.96□□□□□ -0.65
LRRC28-208ENST00000558771 SMARCA2P51531 1590 aa10.94□□□□□ -0.66
LRRC28-208ENST00000558771 SMARCA4P51532 1647 aa10.93□□□□□ -0.66
LRRC28-208ENST00000558771 THOC2Q8NI27 1593 aaKnown RBP10.92□□□□□ -0.66
LRRC28-208ENST00000558771 SSUH2Q9Y2M2 353 aa10.91□□□□□ -0.66
LRRC28-208ENST00000558771 REM2Q8IYK8 340 aaPredicted RBP10.89□□□□□ -0.67
LRRC28-208ENST00000558771 BAZ1BQ9UIG0 1483 aaKnown RBP10.88□□□□□ -0.67
LRRC28-208ENST00000558771 SPDYE4A6NLX3 237 aa10.86□□□□□ -0.67
LRRC28-208ENST00000558771 TRIM41Q8WV44 630 aa10.85□□□□□ -0.67
LRRC28-208ENST00000558771 LAMC3Q9Y6N6 1575 aa10.85□□□□□ -0.67
LRRC28-208ENST00000558771 KIF21AQ7Z4S6 1674 aa10.83□□□□□ -0.68
LRRC28-208ENST00000558771 BAZ1AQ9NRL2 1556 aaPredicted RBP10.83□□□□□ -0.68
LRRC28-208ENST00000558771 PEG3Q9GZU2 1588 aa10.82□□□□□ -0.68
LRRC28-208ENST00000558771 PDS5BQ9NTI5 1447 aa10.79□□□□□ -0.68
LRRC28-208ENST00000558771 CHRDL2Q6WN34 429 aa10.76□□□□□ -0.69
LRRC28-208ENST00000558771 MROH2BQ7Z745 1585 aa10.75□□□□□ -0.69
LRRC28-208ENST00000558771 PITPNM1O00562 1244 aa10.75□□□□□ -0.69
LRRC28-208ENST00000558771 SPDYE1Q8NFV5 336 aaPredicted RBP10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms