RNA–Protein interactions for RNA: ENST00000557222.5

VRK1-206, Transcript of vaccinia related kinase 1, humanhuman

TSL 5

Gene VRK1, Length 1,029 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-206ENST00000557222 ZNF608Q9ULD9 1512 aaPredicted RBP16.03■□□□□ 0.16
VRK1-206ENST00000557222 DNMBPQ6XZF7 1577 aa16■□□□□ 0.15
VRK1-206ENST00000557222 RBM42Q9BTD8 480 aaKnown RBP15.99■□□□□ 0.15
VRK1-206ENST00000557222 RIMBP3CA6NJZ7 1639 aa15.94■□□□□ 0.14
VRK1-206ENST00000557222 RIMBP3BA6NNM3 1639 aa15.94■□□□□ 0.14
VRK1-206ENST00000557222 RIMBP3Q9UFD9 1639 aa15.94■□□□□ 0.14
VRK1-206ENST00000557222 EIF4G3O43432 1585 aaKnown RBP15.92■□□□□ 0.14
VRK1-206ENST00000557222 TARBP1Q13395 1621 aaKnown RBP15.91■□□□□ 0.14
VRK1-206ENST00000557222 ARHGEF11O15085 1522 aa15.9■□□□□ 0.14
VRK1-206ENST00000557222 AQRO60306 1485 aaKnown RBP eCLIP15.89■□□□□ 0.137e-7■■□□□ 11.4
VRK1-206ENST00000557222 POLA1P09884 1462 aaPredicted RBP15.89■□□□□ 0.13
VRK1-206ENST00000557222 FBLN2P98095 1184 aa15.87■□□□□ 0.13
VRK1-206ENST00000557222 SOGA1O94964 1423 aa15.84■□□□□ 0.13
VRK1-206ENST00000557222 MKRN4PQ13434 485 aaPredicted RBP15.83■□□□□ 0.12
VRK1-206ENST00000557222 WDR97A6NE52 1622 aa15.83■□□□□ 0.12
VRK1-206ENST00000557222 CYB5RLQ6IPT4 315 aa15.8■□□□□ 0.12
VRK1-206ENST00000557222 CHD1O14646 1710 aa15.8■□□□□ 0.12
VRK1-206ENST00000557222 RAD54L2Q9Y4B4 1467 aa15.79■□□□□ 0.12
VRK1-206ENST00000557222 TDRD9Q8NDG6 1382 aaKnown RBP15.78■□□□□ 0.12
VRK1-206ENST00000557222 FGD5Q6ZNL6 1462 aa15.76■□□□□ 0.11
VRK1-206ENST00000557222 MAGI1Q96QZ7 1491 aaPredicted RBP15.74■□□□□ 0.11
VRK1-206ENST00000557222 ARAP1Q96P48 1450 aa15.73■□□□□ 0.11
VRK1-206ENST00000557222 CHMP7Q8WUX9 453 aaPredicted RBP15.73■□□□□ 0.11
VRK1-206ENST00000557222 CUX1P39880 1505 aa15.73■□□□□ 0.11
VRK1-206ENST00000557222 GRIN2BQ13224 1484 aa15.71■□□□□ 0.11
VRK1-206ENST00000557222 SNAPC4Q5SXM2 1469 aa15.71■□□□□ 0.11
VRK1-206ENST00000557222 AKT1S1Q96B36 256 aa15.71■□□□□ 0.11
VRK1-206ENST00000557222 CLASP1Q7Z460 1538 aa15.68■□□□□ 0.1
VRK1-206ENST00000557222 SYNJ1O43426 1573 aa15.68■□□□□ 0.1
VRK1-206ENST00000557222 SYNJ2O15056 1496 aa15.67■□□□□ 0.1
VRK1-206ENST00000557222 SPDYE2BA6NHP3 402 aa15.64■□□□□ 0.09
VRK1-206ENST00000557222 SPDYE6P0CI01 402 aa15.64■□□□□ 0.09
VRK1-206ENST00000557222 SPDYE2Q495Y8 402 aa15.64■□□□□ 0.09
VRK1-206ENST00000557222 GAPVD1Q14C86 1478 aa15.64■□□□□ 0.09
VRK1-206ENST00000557222 ABCA10Q8WWZ4 1543 aa15.63■□□□□ 0.09
VRK1-206ENST00000557222 REM2Q8IYK8 340 aaPredicted RBP15.58■□□□□ 0.08
VRK1-206ENST00000557222 WRNQ14191 1432 aaPredicted RBP eCLIP15.56■□□□□ 0.08
VRK1-206ENST00000557222 ABCA5Q8WWZ7 1642 aa15.56■□□□□ 0.08
VRK1-206ENST00000557222 PBRM1Q86U86 1689 aa15.56■□□□□ 0.08
VRK1-206ENST00000557222 SUPT5HO00267 1087 aaKnown RBP15.54■□□□□ 0.08
VRK1-206ENST00000557222 ZNF692Q9BU19 519 aaPredicted RBP15.53■□□□□ 0.08
VRK1-206ENST00000557222 CHRDL2Q6WN34 429 aa15.51■□□□□ 0.07
VRK1-206ENST00000557222 POTEHQ6S545 545 aa15.5■□□□□ 0.07
VRK1-206ENST00000557222 GRIN2AQ12879 1464 aa15.49■□□□□ 0.07
VRK1-206ENST00000557222 SSUH2Q9Y2M2 353 aa15.49■□□□□ 0.07
VRK1-206ENST00000557222 TOP2BQ02880 1626 aa15.48■□□□□ 0.07
VRK1-206ENST00000557222 NUP160Q12769 1436 aa15.47■□□□□ 0.07
VRK1-206ENST00000557222 BIVM-ERCC5R4GMW8 1640 aa15.46■□□□□ 0.07
VRK1-206ENST00000557222 FHAD1B1AJZ9 1412 aa15.46■□□□□ 0.07
VRK1-206ENST00000557222 ADAMTS12P58397 1594 aa15.45■□□□□ 0.06
VRK1-206ENST00000557222 ERICH3Q5RHP9 1530 aa15.43■□□□□ 0.06
VRK1-206ENST00000557222 PITPNM1O00562 1244 aa15.4■□□□□ 0.06
VRK1-206ENST00000557222 CEP170Q5SW79 1584 aa15.4■□□□□ 0.06
VRK1-206ENST00000557222 SHROOM2Q13796 1616 aa15.39■□□□□ 0.05
VRK1-206ENST00000557222 ERCC6L2Q5T890 1561 aa15.36■□□□□ 0.05
VRK1-206ENST00000557222 JPH4Q96JJ6 628 aa15.33■□□□□ 0.04
VRK1-206ENST00000557222 PRG4Q92954 1404 aaPredicted RBP15.3■□□□□ 0.04
VRK1-206ENST00000557222 SPDYE1Q8NFV5 336 aaPredicted RBP15.29■□□□□ 0.04
VRK1-206ENST00000557222 SPDYE4A6NLX3 237 aa15.26■□□□□ 0.03
VRK1-206ENST00000557222 CLEC11AQ9Y240 323 aa15.24■□□□□ 0.03
VRK1-206ENST00000557222 PIP4P2Q8N4L2 257 aa15.22■□□□□ 0.03
VRK1-206ENST00000557222 IGF1RP08069 1367 aa15.22■□□□□ 0.03
VRK1-206ENST00000557222 RUSC2Q8N2Y8 1516 aa15.22■□□□□ 0.03
VRK1-206ENST00000557222 KIF27Q86VH2 1401 aa15.21■□□□□ 0.03
VRK1-206ENST00000557222 NPM1P06748 294 aaKnown RBP eCLIP15.21■□□□□ 0.03
VRK1-206ENST00000557222 KIAA0586Q9BVV6 1533 aa15.21■□□□□ 0.03
VRK1-206ENST00000557222 FXR2P51116 673 aaKnown RBP eCLIP15.2■□□□□ 0.02
VRK1-206ENST00000557222 ABCC10Q5T3U5 1492 aa15.17■□□□□ 0.02
VRK1-206ENST00000557222 KIF13AQ9H1H9 1805 aa15.17■□□□□ 0.02
VRK1-206ENST00000557222 MAPKBP1O60336 1514 aa15.17■□□□□ 0.02
VRK1-206ENST00000557222 CUL7Q14999 1698 aa15.16■□□□□ 0.02
VRK1-206ENST00000557222 FAM69CQ0P6D2 419 aa15.14■□□□□ 0.01
VRK1-206ENST00000557222 CARMIL1Q5VZK9 1371 aa15.11■□□□□ 0.01
VRK1-206ENST00000557222 ADCY10Q96PN6 1610 aa15.1■□□□□ 0.01
VRK1-206ENST00000557222 PTPRGP23470 1445 aa15.08■□□□□ 0
VRK1-206ENST00000557222 DIP2BQ9P265 1576 aa15.07■□□□□ 0
VRK1-206ENST00000557222 CARMIL2Q6F5E8 1435 aa15.07■□□□□ 0
VRK1-206ENST00000557222 TNIKQ9UKE5 1360 aa15.05■□□□□ -0
VRK1-206ENST00000557222 PRR29P0C7W0 189 aa15.04■□□□□ -0
VRK1-206ENST00000557222 PRKAR2AP13861 404 aaKnown RBP15.01□□□□□ -0.01
VRK1-206ENST00000557222 ABCC2Q92887 1545 aa15□□□□□ -0.01
VRK1-206ENST00000557222 UHRF1BP1LA0JNW5 1464 aa15□□□□□ -0.01
VRK1-206ENST00000557222 IQGAP2Q13576 1575 aa14.99□□□□□ -0.01
VRK1-206ENST00000557222 PLB1Q6P1J6 1458 aa14.99□□□□□ -0.01
VRK1-206ENST00000557222 KDM6BO15054 1643 aa14.96□□□□□ -0.01
VRK1-206ENST00000557222 PROM2Q8N271 834 aa14.96□□□□□ -0.01
VRK1-206ENST00000557222 UACAQ9BZF9 1416 aa14.96□□□□□ -0.01
VRK1-206ENST00000557222 STAG3Q9UJ98 1225 aa14.96□□□□□ -0.01
VRK1-206ENST00000557222 RAPGEF2Q9Y4G8 1499 aa14.95□□□□□ -0.02
VRK1-206ENST00000557222 GLI2P10070 1586 aa14.95□□□□□ -0.02
VRK1-206ENST00000557222 ASXL2Q76L83 1435 aa14.94□□□□□ -0.02
VRK1-206ENST00000557222 DISP1Q96F81 1524 aa14.94□□□□□ -0.02
VRK1-206ENST00000557222 UGGT2Q9NYU1 1516 aa14.93□□□□□ -0.02
VRK1-206ENST00000557222 CHADLQ6NUI6 762 aa14.92□□□□□ -0.02
VRK1-206ENST00000557222 TTBK1Q5TCY1 1321 aaPredicted RBP14.92□□□□□ -0.02
VRK1-206ENST00000557222 TSPOAP1O95153 1857 aa14.91□□□□□ -0.02
VRK1-206ENST00000557222 KDM5BQ9UGL1 1544 aa14.91□□□□□ -0.02
VRK1-206ENST00000557222 KDM4FA0A1W2PPD8 638 aa14.89□□□□□ -0.03
VRK1-206ENST00000557222 FKBP8Q14318 412 aa14.88□□□□□ -0.03
VRK1-206ENST00000557222 EPRSP07814 1512 aaKnown RBP14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms