RNA–Protein interactions for RNA: ENST00000555905.5

TMEM260-208, Transcript of transmembrane protein 260, humanhuman

TSL 5

Gene TMEM260, Length 766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-208ENST00000555905 LOC105371045A0A1W2PR82 267 aa17.92■□□□□ 0.46
TMEM260-208ENST00000555905 SYNJ2O15056 1496 aa17.91■□□□□ 0.46
TMEM260-208ENST00000555905 UBTFP17480 764 aaKnown RBP17.89■□□□□ 0.45
TMEM260-208ENST00000555905 CHMP7Q8WUX9 453 aaPredicted RBP17.88■□□□□ 0.45
TMEM260-208ENST00000555905 FBLN2P98095 1184 aa17.86■□□□□ 0.45
TMEM260-208ENST00000555905 GRIN2AQ12879 1464 aa17.85■□□□□ 0.45
TMEM260-208ENST00000555905 CHD1O14646 1710 aa17.83■□□□□ 0.44
TMEM260-208ENST00000555905 TNIKQ9UKE5 1360 aa17.81■□□□□ 0.44
TMEM260-208ENST00000555905 CTTNBP2Q8WZ74 1663 aa17.8■□□□□ 0.44
TMEM260-208ENST00000555905 CEP170Q5SW79 1584 aa17.74■□□□□ 0.43
TMEM260-208ENST00000555905 NUP160Q12769 1436 aa17.73■□□□□ 0.43
TMEM260-208ENST00000555905 KIAA0586Q9BVV6 1533 aa17.71■□□□□ 0.43
TMEM260-208ENST00000555905 IQGAP2Q13576 1575 aa17.7■□□□□ 0.42
TMEM260-208ENST00000555905 CEP162Q5TB80 1403 aa17.68■□□□□ 0.42
TMEM260-208ENST00000555905 RANGAP1P46060 587 aaPredicted RBP17.66■□□□□ 0.42
TMEM260-208ENST00000555905 CLIP1P30622 1438 aa17.64■□□□□ 0.42
TMEM260-208ENST00000555905 OSCARQ8IYS5 282 aa17.63■□□□□ 0.41
TMEM260-208ENST00000555905 CLASP1Q7Z460 1538 aa17.61■□□□□ 0.41
TMEM260-208ENST00000555905 EFCAB5A4FU69 1503 aa17.6■□□□□ 0.41
TMEM260-208ENST00000555905 UGGT2Q9NYU1 1516 aa17.6■□□□□ 0.41
TMEM260-208ENST00000555905 JPH4Q96JJ6 628 aa17.58■□□□□ 0.4
TMEM260-208ENST00000555905 SAMD9Q5K651 1589 aa17.56■□□□□ 0.4
TMEM260-208ENST00000555905 ARHGAP35Q9NRY4 1499 aa17.56■□□□□ 0.4
TMEM260-208ENST00000555905 SHROOM2Q13796 1616 aa17.55■□□□□ 0.4
TMEM260-208ENST00000555905 CARMIL2Q6F5E8 1435 aa17.53■□□□□ 0.4
TMEM260-208ENST00000555905 KIAA0556O60303 1618 aa17.51■□□□□ 0.39
TMEM260-208ENST00000555905 P3H3Q8IVL6 736 aa17.51■□□□□ 0.39
TMEM260-208ENST00000555905 DISP1Q96F81 1524 aa17.51■□□□□ 0.39
TMEM260-208ENST00000555905 PRG4Q92954 1404 aaPredicted RBP17.5■□□□□ 0.39
TMEM260-208ENST00000555905 ARAP1Q96P48 1450 aa17.5■□□□□ 0.39
TMEM260-208ENST00000555905 FHOD3Q2V2M9 1422 aa17.48■□□□□ 0.39
TMEM260-208ENST00000555905 FMN1Q68DA7 1419 aa17.43■□□□□ 0.38
TMEM260-208ENST00000555905 VPS8Q8N3P4 1428 aa17.43■□□□□ 0.38
TMEM260-208ENST00000555905 ERCC6L2Q5T890 1561 aa17.4■□□□□ 0.38
TMEM260-208ENST00000555905 TTBK1Q5TCY1 1321 aaPredicted RBP17.39■□□□□ 0.37
TMEM260-208ENST00000555905 PTPRGP23470 1445 aa17.37■□□□□ 0.37
TMEM260-208ENST00000555905 PCF11O94913 1555 aaKnown RBP17.34■□□□□ 0.37
TMEM260-208ENST00000555905 FYCO1Q9BQS8 1478 aa17.33■□□□□ 0.37
TMEM260-208ENST00000555905 CASKIN1Q8WXD9 1431 aa17.33■□□□□ 0.36
TMEM260-208ENST00000555905 ARHGEF11O15085 1522 aa17.32■□□□□ 0.36
TMEM260-208ENST00000555905 ATP1B4Q9UN42 357 aaPredicted RBP17.31■□□□□ 0.36
TMEM260-208ENST00000555905 RAPGEF6Q8TEU7 1601 aa17.31■□□□□ 0.36
TMEM260-208ENST00000555905 APLP2Q06481 763 aa17.3■□□□□ 0.36
TMEM260-208ENST00000555905 HECW1Q76N89 1606 aa17.29■□□□□ 0.36
TMEM260-208ENST00000555905 PLB1Q6P1J6 1458 aa17.28■□□□□ 0.36
TMEM260-208ENST00000555905 RIMBP3CA6NJZ7 1639 aa17.28■□□□□ 0.36
TMEM260-208ENST00000555905 RIMBP3BA6NNM3 1639 aa17.28■□□□□ 0.36
TMEM260-208ENST00000555905 RIMBP3Q9UFD9 1639 aa17.28■□□□□ 0.36
TMEM260-208ENST00000555905 ABCA8O94911 1581 aa17.28■□□□□ 0.36
TMEM260-208ENST00000555905 UACAQ9BZF9 1416 aa17.26■□□□□ 0.35
TMEM260-208ENST00000555905 CCDC18Q5T9S5 1454 aa17.24■□□□□ 0.35
TMEM260-208ENST00000555905 NUP153P49790 1475 aaKnown RBP17.23■□□□□ 0.35
TMEM260-208ENST00000555905 ABCC2Q92887 1545 aa17.22■□□□□ 0.35
TMEM260-208ENST00000555905 MAP3K1Q13233 1512 aa17.21■□□□□ 0.35
TMEM260-208ENST00000555905 LRRIQ1Q96JM4 1722 aa17.21■□□□□ 0.35
TMEM260-208ENST00000555905 CFAP43Q8NDM7 1665 aa17.21■□□□□ 0.35
TMEM260-208ENST00000555905 UHRF1BP1LA0JNW5 1464 aa17.21■□□□□ 0.35
TMEM260-208ENST00000555905 EPRSP07814 1512 aaKnown RBP17.21■□□□□ 0.34
TMEM260-208ENST00000555905 TIAM1Q13009 1591 aa17.2■□□□□ 0.34
TMEM260-208ENST00000555905 ARID3CA6NKF2 412 aa17.17■□□□□ 0.34
TMEM260-208ENST00000555905 ADCY10Q96PN6 1610 aa17.17■□□□□ 0.34
TMEM260-208ENST00000555905 CDK13Q14004 1512 aaKnown RBP17.16■□□□□ 0.34
TMEM260-208ENST00000555905 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.16■□□□□ 0.34
TMEM260-208ENST00000555905 HNRNPUL2Q1KMD3 747 aaKnown RBP17.16■□□□□ 0.34
TMEM260-208ENST00000555905 CYB5RLQ6IPT4 315 aa17.15■□□□□ 0.34
TMEM260-208ENST00000555905 ATP10BO94823 1461 aa17.13■□□□□ 0.33
TMEM260-208ENST00000555905 CDK11AQ9UQ88 783 aaPredicted RBP17.13■□□□□ 0.33
TMEM260-208ENST00000555905 LRRC9Q6ZRR7 1453 aa17.12■□□□□ 0.33
TMEM260-208ENST00000555905 KDM5BQ9UGL1 1544 aa17.11■□□□□ 0.33
TMEM260-208ENST00000555905 ZCCHC11Q5TAX3 1644 aaKnown RBP17.11■□□□□ 0.33
TMEM260-208ENST00000555905 PPARGC1BQ86YN6 1023 aaKnown RBP17.11■□□□□ 0.33
TMEM260-208ENST00000555905 MTUS2Q5JR59 1369 aa17.11■□□□□ 0.33
TMEM260-208ENST00000555905 NPM1P06748 294 aaKnown RBP eCLIP17.1■□□□□ 0.33
TMEM260-208ENST00000555905 KANK4Q5T7N3 995 aaPredicted RBP17.1■□□□□ 0.33
TMEM260-208ENST00000555905 DNAJC5Q9H3Z4 198 aa17.1■□□□□ 0.33
TMEM260-208ENST00000555905 EHBP1L1Q8N3D4 1523 aa17.08■□□□□ 0.32
TMEM260-208ENST00000555905 PLEKHD1A6NEE1 506 aa17.07■□□□□ 0.32
TMEM260-208ENST00000555905 MAGI3Q5TCQ9 1506 aa17.06■□□□□ 0.32
TMEM260-208ENST00000555905 SUPT6HQ7KZ85 1726 aaKnown RBP17.04■□□□□ 0.32
TMEM260-208ENST00000555905 TROQ12816 1431 aaPredicted RBP17.04■□□□□ 0.32
TMEM260-208ENST00000555905 KIF14Q15058 1648 aa16.99■□□□□ 0.31
TMEM260-208ENST00000555905 WDR7Q9Y4E6 1490 aa16.99■□□□□ 0.31
TMEM260-208ENST00000555905 ASXL2Q76L83 1435 aa16.98■□□□□ 0.31
TMEM260-208ENST00000555905 PPP4R3CPQ6ZMV5 832 aa16.98■□□□□ 0.31
TMEM260-208ENST00000555905 NCOA2Q15596 1464 aa16.98■□□□□ 0.31
TMEM260-208ENST00000555905 MAPKBP1O60336 1514 aa16.96■□□□□ 0.31
TMEM260-208ENST00000555905 KCNH8Q96L42 1107 aa16.94■□□□□ 0.3
TMEM260-208ENST00000555905 SCAF1Q9H7N4 1312 aaKnown RBP16.94■□□□□ 0.3
TMEM260-208ENST00000555905 CCNB3Q8WWL7 1395 aa16.91■□□□□ 0.3
TMEM260-208ENST00000555905 MAPK8IP2Q13387 824 aaPredicted RBP16.91■□□□□ 0.3
TMEM260-208ENST00000555905 PHLDB1Q86UU1 1377 aa16.9■□□□□ 0.3
TMEM260-208ENST00000555905 ITSN2Q9NZM3 1697 aa16.89■□□□□ 0.29
TMEM260-208ENST00000555905 ABCC10Q5T3U5 1492 aa16.89■□□□□ 0.29
TMEM260-208ENST00000555905 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.89■□□□□ 0.29
TMEM260-208ENST00000555905 MYOM3Q5VTT5 1437 aa16.88■□□□□ 0.29
TMEM260-208ENST00000555905 TTC37Q6PGP7 1564 aa16.87■□□□□ 0.29
TMEM260-208ENST00000555905 POTEDQ86YR6 584 aa16.87■□□□□ 0.29
TMEM260-208ENST00000555905 CDC42BPAQ5VT25 1732 aa16.87■□□□□ 0.29
TMEM260-208ENST00000555905 TRIM26Q12899 539 aaPredicted RBP16.86■□□□□ 0.29
TMEM260-208ENST00000555905 MYO5CQ9NQX4 1742 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms