RNA–Protein interactions for RNA: ENST00000554429.5

PRPF39-206, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,977 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-206ENST00000554429 SMARCA4P51532 1647 aa5.11□□□□□ -1.59
PRPF39-206ENST00000554429 SCUBE2Q9NQ36 999 aa5.11□□□□□ -1.59
PRPF39-206ENST00000554429 LCE2DQ5TA82 110 aaPredicted RBP5.1□□□□□ -1.59
PRPF39-206ENST00000554429 FAM163AQ96GL9 167 aaPredicted RBP5.1□□□□□ -1.59
PRPF39-206ENST00000554429 ATAD2BQ9ULI0 1458 aa5.1□□□□□ -1.59
PRPF39-206ENST00000554429 PRR29P0C7W0 189 aa5.1□□□□□ -1.59
PRPF39-206ENST00000554429 C7P10643 843 aa5.09□□□□□ -1.59
PRPF39-206ENST00000554429 THOC2Q8NI27 1593 aaKnown RBP5.09□□□□□ -1.59
PRPF39-206ENST00000554429 SLC39A7Q92504 469 aa5.09□□□□□ -1.6
PRPF39-206ENST00000554429 FARP1Q9Y4F1 1045 aaPredicted RBP5.09□□□□□ -1.6
PRPF39-206ENST00000554429 FBLN2P98095 1184 aa5.08□□□□□ -1.6
PRPF39-206ENST00000554429 LAMC3Q9Y6N6 1575 aa5.08□□□□□ -1.6
PRPF39-206ENST00000554429 BAZ1AQ9NRL2 1556 aaPredicted RBP5.08□□□□□ -1.6
PRPF39-206ENST00000554429 MMRN1Q13201 1228 aa5.07□□□□□ -1.6
PRPF39-206ENST00000554429 EHMT2Q96KQ7 1210 aa5.07□□□□□ -1.6
PRPF39-206ENST00000554429 SSUH2Q9Y2M2 353 aa5.07□□□□□ -1.6
PRPF39-206ENST00000554429 CHADLQ6NUI6 762 aa5.07□□□□□ -1.6
PRPF39-206ENST00000554429 ERCC6Q03468 1493 aa5.03□□□□□ -1.6
PRPF39-206ENST00000554429 ZRANB1Q9UGI0 708 aa5.02□□□□□ -1.61
PRPF39-206ENST00000554429 BAZ1BQ9UIG0 1483 aaKnown RBP5.02□□□□□ -1.61
PRPF39-206ENST00000554429 SPNS2Q8IVW8 549 aa5.02□□□□□ -1.61
PRPF39-206ENST00000554429 KIF21AQ7Z4S6 1674 aa5.02□□□□□ -1.61
PRPF39-206ENST00000554429 IGSF5Q9NSI5 407 aa5.01□□□□□ -1.61
PRPF39-206ENST00000554429 WDR62O43379 1518 aa5.01□□□□□ -1.61
PRPF39-206ENST00000554429 METRNQ9UJH8 293 aa5□□□□□ -1.61
PRPF39-206ENST00000554429 PRDM2Q13029 1718 aa4.99□□□□□ -1.61
PRPF39-206ENST00000554429 ASTLQ6HA08 431 aaPredicted RBP4.99□□□□□ -1.61
PRPF39-206ENST00000554429 ZNF692Q9BU19 519 aaPredicted RBP4.99□□□□□ -1.61
PRPF39-206ENST00000554429 NESP48681 1621 aa4.99□□□□□ -1.61
PRPF39-206ENST00000554429 GALR2O43603 387 aaPredicted RBP4.98□□□□□ -1.61
PRPF39-206ENST00000554429 PAK3O75914 559 aaPredicted RBP4.98□□□□□ -1.61
PRPF39-206ENST00000554429 PDS5BQ9NTI5 1447 aa4.98□□□□□ -1.61
PRPF39-206ENST00000554429 MROH2BQ7Z745 1585 aa4.98□□□□□ -1.61
PRPF39-206ENST00000554429 MRC2Q9UBG0 1479 aa4.96□□□□□ -1.61
PRPF39-206ENST00000554429 CADPSQ9ULU8 1353 aa4.95□□□□□ -1.62
PRPF39-206ENST00000554429 POTEJP0CG39 1038 aa4.95□□□□□ -1.62
PRPF39-206ENST00000554429 ATF5Q9Y2D1 282 aaPredicted RBP4.94□□□□□ -1.62
PRPF39-206ENST00000554429 TMEM121BQ9BXQ6 578 aaPredicted RBP4.93□□□□□ -1.62
PRPF39-206ENST00000554429 DAXXQ9UER7 740 aaPredicted RBP4.93□□□□□ -1.62
PRPF39-206ENST00000554429 PELP1Q8IZL8 1130 aaKnown RBP4.93□□□□□ -1.62
PRPF39-206ENST00000554429 ATMINO43313 823 aaPredicted RBP4.92□□□□□ -1.62
PRPF39-206ENST00000554429 CFTRP13569 1480 aa4.92□□□□□ -1.62
PRPF39-206ENST00000554429 WIZO95785 1651 aa4.92□□□□□ -1.62
PRPF39-206ENST00000554429 TOP2AP11388 1531 aaKnown RBP4.91□□□□□ -1.62
PRPF39-206ENST00000554429 RTN4Q9NQC3 1192 aaKnown RBP4.91□□□□□ -1.62
PRPF39-206ENST00000554429 ATXN8OSP0DMR3 200 aa4.9□□□□□ -1.62
PRPF39-206ENST00000554429 CEP164Q9UPV0 1460 aa4.9□□□□□ -1.62
PRPF39-206ENST00000554429 FANCD2Q9BXW9 1451 aa4.88□□□□□ -1.63
PRPF39-206ENST00000554429 WDR97A6NE52 1622 aa4.88□□□□□ -1.63
PRPF39-206ENST00000554429 URB2Q14146 1524 aaKnown RBP4.87□□□□□ -1.63
PRPF39-206ENST00000554429 SNPHO15079 494 aa4.86□□□□□ -1.63
PRPF39-206ENST00000554429 ABCC8Q09428 1581 aa4.85□□□□□ -1.63
PRPF39-206ENST00000554429 ST18O60284 1047 aa4.85□□□□□ -1.63
PRPF39-206ENST00000554429 IFT140Q96RY7 1462 aa4.85□□□□□ -1.63
PRPF39-206ENST00000554429 RSF1Q96T23 1441 aaPredicted RBP4.84□□□□□ -1.63
PRPF39-206ENST00000554429 NPM1P06748 294 aaKnown RBP eCLIP4.84□□□□□ -1.63
PRPF39-206ENST00000554429 RIMBP3CA6NJZ7 1639 aa4.84□□□□□ -1.64
PRPF39-206ENST00000554429 RIMBP3BA6NNM3 1639 aa4.84□□□□□ -1.64
PRPF39-206ENST00000554429 RIMBP3Q9UFD9 1639 aa4.84□□□□□ -1.64
PRPF39-206ENST00000554429 SOCS7O14512 581 aa4.83□□□□□ -1.64
PRPF39-206ENST00000554429 PRKCSHP14314 528 aaPredicted RBP4.83□□□□□ -1.64
PRPF39-206ENST00000554429 STAG3Q9UJ98 1225 aa4.83□□□□□ -1.64
PRPF39-206ENST00000554429 DNMBPQ6XZF7 1577 aa4.82□□□□□ -1.64
PRPF39-206ENST00000554429 TARBP1Q13395 1621 aaKnown RBP4.82□□□□□ -1.64
PRPF39-206ENST00000554429 FOXD4L1Q9NU39 408 aa4.82□□□□□ -1.64
PRPF39-206ENST00000554429 PHF12Q96QT6 1004 aa4.81□□□□□ -1.64
PRPF39-206ENST00000554429 EIF4G3O43432 1585 aaKnown RBP4.81□□□□□ -1.64
PRPF39-206ENST00000554429 TOPBP1Q92547 1522 aa4.8□□□□□ -1.64
PRPF39-206ENST00000554429 CHD1O14646 1710 aa4.79□□□□□ -1.64
PRPF39-206ENST00000554429 ARHGEF11O15085 1522 aa4.79□□□□□ -1.64
PRPF39-206ENST00000554429 CCDC88BA6NC98 1476 aa4.79□□□□□ -1.64
PRPF39-206ENST00000554429 CREBZFQ9NS37 354 aa4.78□□□□□ -1.64
PRPF39-206ENST00000554429 IER5LQ5T953 404 aa4.78□□□□□ -1.64
PRPF39-206ENST00000554429 CLASP1Q7Z460 1538 aa4.78□□□□□ -1.64
PRPF39-206ENST00000554429 MS4A3Q96HJ5 214 aa4.77□□□□□ -1.65
PRPF39-206ENST00000554429 ZNF608Q9ULD9 1512 aaPredicted RBP4.76□□□□□ -1.65
PRPF39-206ENST00000554429 MYT1Q01538 1121 aa4.76□□□□□ -1.65
PRPF39-206ENST00000554429 KCNA4P22459 653 aa4.75□□□□□ -1.65
PRPF39-206ENST00000554429 TIE1P35590 1138 aa4.75□□□□□ -1.65
PRPF39-206ENST00000554429 ATN1P54259 1190 aaPredicted RBP4.75□□□□□ -1.65
PRPF39-206ENST00000554429 MKRN4PQ13434 485 aaPredicted RBP4.75□□□□□ -1.65
PRPF39-206ENST00000554429 SLAIN1Q8ND83 568 aa4.75□□□□□ -1.65
PRPF39-206ENST00000554429 POTEFA5A3E0 1075 aa4.74□□□□□ -1.65
PRPF39-206ENST00000554429 TTBK1Q5TCY1 1321 aaPredicted RBP4.74□□□□□ -1.65
PRPF39-206ENST00000554429 MAGI1Q96QZ7 1491 aaPredicted RBP4.74□□□□□ -1.65
PRPF39-206ENST00000554429 POLA1P09884 1462 aaPredicted RBP4.73□□□□□ -1.65
PRPF39-206ENST00000554429 ARAP1Q96P48 1450 aa4.73□□□□□ -1.65
PRPF39-206ENST00000554429 SEC24BO95487 1268 aa4.73□□□□□ -1.65
PRPF39-206ENST00000554429 PBRM1Q86U86 1689 aa4.73□□□□□ -1.65
PRPF39-206ENST00000554429 SYNJ1O43426 1573 aa4.73□□□□□ -1.65
PRPF39-206ENST00000554429 TRIM41Q8WV44 630 aa4.72□□□□□ -1.65
PRPF39-206ENST00000554429 ABCA5Q8WWZ7 1642 aa4.72□□□□□ -1.65
PRPF39-206ENST00000554429 ERICH6Q7L0X2 663 aa4.71□□□□□ -1.66
PRPF39-206ENST00000554429 SHROOM2Q13796 1616 aa4.7□□□□□ -1.66
PRPF39-206ENST00000554429 CUX1P39880 1505 aa4.69□□□□□ -1.66
PRPF39-206ENST00000554429 SYNJ2O15056 1496 aa4.69□□□□□ -1.66
PRPF39-206ENST00000554429 GRIN2BQ13224 1484 aa4.69□□□□□ -1.66
PRPF39-206ENST00000554429 PTGER2P43116 358 aa4.69□□□□□ -1.66
PRPF39-206ENST00000554429 ABCA10Q8WWZ4 1543 aa4.69□□□□□ -1.66
PRPF39-206ENST00000554429 AMER1Q5JTC6 1135 aaPredicted RBP4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms