RNA–Protein interactions for RNA: ENST00000553488.5

ATXN3-219, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,065 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-219ENST00000553488 SPDYE6P0CI01 402 aa14.07□□□□□ -0.16
ATXN3-219ENST00000553488 SPDYE2Q495Y8 402 aa14.07□□□□□ -0.16
ATXN3-219ENST00000553488 RIMBP3CA6NJZ7 1639 aa14.05□□□□□ -0.16
ATXN3-219ENST00000553488 RIMBP3BA6NNM3 1639 aa14.05□□□□□ -0.16
ATXN3-219ENST00000553488 RIMBP3Q9UFD9 1639 aa14.05□□□□□ -0.16
ATXN3-219ENST00000553488 AKT1S1Q96B36 256 aa14.05□□□□□ -0.16
ATXN3-219ENST00000553488 ZNF608Q9ULD9 1512 aaPredicted RBP14□□□□□ -0.17
ATXN3-219ENST00000553488 SSUH2Q9Y2M2 353 aa13.99□□□□□ -0.17
ATXN3-219ENST00000553488 IFT140Q96RY7 1462 aa13.97□□□□□ -0.17
ATXN3-219ENST00000553488 ARHGEF11O15085 1522 aa13.96□□□□□ -0.17
ATXN3-219ENST00000553488 EIF4G3O43432 1585 aaKnown RBP13.96□□□□□ -0.18
ATXN3-219ENST00000553488 TOPBP1Q92547 1522 aa13.94□□□□□ -0.18
ATXN3-219ENST00000553488 ZNF692Q9BU19 519 aaPredicted RBP13.93□□□□□ -0.18
ATXN3-219ENST00000553488 CCDC88BA6NC98 1476 aa13.92□□□□□ -0.18
ATXN3-219ENST00000553488 CHD1O14646 1710 aa13.91□□□□□ -0.18
ATXN3-219ENST00000553488 REM2Q8IYK8 340 aaPredicted RBP13.91□□□□□ -0.18
ATXN3-219ENST00000553488 DNMBPQ6XZF7 1577 aa13.9□□□□□ -0.18
ATXN3-219ENST00000553488 TARBP1Q13395 1621 aaKnown RBP13.89□□□□□ -0.19
ATXN3-219ENST00000553488 ABCC8Q09428 1581 aa13.85□□□□□ -0.19
ATXN3-219ENST00000553488 ARAP1Q96P48 1450 aa13.82□□□□□ -0.2
ATXN3-219ENST00000553488 SPDYE4A6NLX3 237 aa13.81□□□□□ -0.2
ATXN3-219ENST00000553488 AQRO60306 1485 aaKnown RBP eCLIP13.79□□□□□ -0.2
ATXN3-219ENST00000553488 POLA1P09884 1462 aaPredicted RBP13.79□□□□□ -0.2
ATXN3-219ENST00000553488 PITPNM1O00562 1244 aa13.76□□□□□ -0.21
ATXN3-219ENST00000553488 CHRDL2Q6WN34 429 aa13.76□□□□□ -0.21
ATXN3-219ENST00000553488 WDR97A6NE52 1622 aa13.73□□□□□ -0.21
ATXN3-219ENST00000553488 CLASP1Q7Z460 1538 aa13.73□□□□□ -0.21
ATXN3-219ENST00000553488 CYB5RLQ6IPT4 315 aa13.72□□□□□ -0.21
ATXN3-219ENST00000553488 RAD54L2Q9Y4B4 1467 aa13.71□□□□□ -0.21
ATXN3-219ENST00000553488 PROM2Q8N271 834 aa13.69□□□□□ -0.22
ATXN3-219ENST00000553488 SNAPC4Q5SXM2 1469 aa13.68□□□□□ -0.22
ATXN3-219ENST00000553488 SPDYE1Q8NFV5 336 aaPredicted RBP13.68□□□□□ -0.22
ATXN3-219ENST00000553488 FGD5Q6ZNL6 1462 aa13.66□□□□□ -0.22
ATXN3-219ENST00000553488 SYNJ1O43426 1573 aa13.65□□□□□ -0.22
ATXN3-219ENST00000553488 CUX1P39880 1505 aa13.64□□□□□ -0.23
ATXN3-219ENST00000553488 MAGI1Q96QZ7 1491 aaPredicted RBP13.64□□□□□ -0.23
ATXN3-219ENST00000553488 TDRD9Q8NDG6 1382 aaKnown RBP13.64□□□□□ -0.23
ATXN3-219ENST00000553488 SOGA1O94964 1423 aa13.64□□□□□ -0.23
ATXN3-219ENST00000553488 PBRM1Q86U86 1689 aa13.63□□□□□ -0.23
ATXN3-219ENST00000553488 POTEHQ6S545 545 aa13.61□□□□□ -0.23
ATXN3-219ENST00000553488 FXR2P51116 673 aaKnown RBP eCLIP13.6□□□□□ -0.23
ATXN3-219ENST00000553488 SYNJ2O15056 1496 aa13.59□□□□□ -0.23
ATXN3-219ENST00000553488 GRIN2BQ13224 1484 aa13.59□□□□□ -0.23
ATXN3-219ENST00000553488 FKBP8Q14318 412 aa13.57□□□□□ -0.24
ATXN3-219ENST00000553488 ABCA5Q8WWZ7 1642 aa13.57□□□□□ -0.24
ATXN3-219ENST00000553488 PIP4P2Q8N4L2 257 aa13.56□□□□□ -0.24
ATXN3-219ENST00000553488 CLEC11AQ9Y240 323 aa13.56□□□□□ -0.24
ATXN3-219ENST00000553488 CHMP7Q8WUX9 453 aaPredicted RBP13.52□□□□□ -0.25
ATXN3-219ENST00000553488 GAPVD1Q14C86 1478 aa13.52□□□□□ -0.25
ATXN3-219ENST00000553488 ABCA10Q8WWZ4 1543 aa13.51□□□□□ -0.25
ATXN3-219ENST00000553488 ERCC6L2Q5T890 1561 aa13.48□□□□□ -0.25
ATXN3-219ENST00000553488 ADAMTS12P58397 1594 aa13.47□□□□□ -0.25
ATXN3-219ENST00000553488 STAG3Q9UJ98 1225 aa13.47□□□□□ -0.25
ATXN3-219ENST00000553488 PRR29P0C7W0 189 aa13.45□□□□□ -0.26
ATXN3-219ENST00000553488 SHROOM2Q13796 1616 aa13.45□□□□□ -0.26
ATXN3-219ENST00000553488 CEP170Q5SW79 1584 aa13.45□□□□□ -0.26
ATXN3-219ENST00000553488 GRIN2AQ12879 1464 aa13.44□□□□□ -0.26
ATXN3-219ENST00000553488 NUP160Q12769 1436 aa13.42□□□□□ -0.26
ATXN3-219ENST00000553488 BIVM-ERCC5R4GMW8 1640 aa13.41□□□□□ -0.26
ATXN3-219ENST00000553488 KIF13AQ9H1H9 1805 aa13.41□□□□□ -0.26
ATXN3-219ENST00000553488 TOP2BQ02880 1626 aa13.38□□□□□ -0.27
ATXN3-219ENST00000553488 PRKAR2AP13861 404 aaKnown RBP13.37□□□□□ -0.27
ATXN3-219ENST00000553488 WRNQ14191 1432 aaPredicted RBP eCLIP13.34□□□□□ -0.27
ATXN3-219ENST00000553488 ERICH3Q5RHP9 1530 aa13.34□□□□□ -0.27
ATXN3-219ENST00000553488 FHAD1B1AJZ9 1412 aa13.33□□□□□ -0.28
ATXN3-219ENST00000553488 CHADLQ6NUI6 762 aa13.32□□□□□ -0.28
ATXN3-219ENST00000553488 CREBZFQ9NS37 354 aa13.31□□□□□ -0.28
ATXN3-219ENST00000553488 RUSC2Q8N2Y8 1516 aa13.29□□□□□ -0.28
ATXN3-219ENST00000553488 PRG4Q92954 1404 aaPredicted RBP13.24□□□□□ -0.29
ATXN3-219ENST00000553488 DIP2BQ9P265 1576 aa13.24□□□□□ -0.29
ATXN3-219ENST00000553488 MAPKBP1O60336 1514 aa13.23□□□□□ -0.29
ATXN3-219ENST00000553488 ADCY10Q96PN6 1610 aa13.22□□□□□ -0.29
ATXN3-219ENST00000553488 MNX1P50219 401 aaPredicted RBP13.21□□□□□ -0.29
ATXN3-219ENST00000553488 ABCC10Q5T3U5 1492 aa13.21□□□□□ -0.3
ATXN3-219ENST00000553488 FARP1Q9Y4F1 1045 aaPredicted RBP13.2□□□□□ -0.3
ATXN3-219ENST00000553488 JPH4Q96JJ6 628 aa13.16□□□□□ -0.3
ATXN3-219ENST00000553488 SUPT5HO00267 1087 aaKnown RBP13.15□□□□□ -0.3
ATXN3-219ENST00000553488 FBXO3Q9UK99 471 aa13.15□□□□□ -0.3
ATXN3-219ENST00000553488 KDM6BO15054 1643 aa13.13□□□□□ -0.31
ATXN3-219ENST00000553488 TSPOAP1O95153 1857 aa13.13□□□□□ -0.31
ATXN3-219ENST00000553488 CUL7Q14999 1698 aa13.13□□□□□ -0.31
ATXN3-219ENST00000553488 C19orf67A6NJJ6 358 aa13.13□□□□□ -0.31
ATXN3-219ENST00000553488 KIAA0586Q9BVV6 1533 aa13.11□□□□□ -0.31
ATXN3-219ENST00000553488 HAX1O00165 279 aa13.1□□□□□ -0.31
ATXN3-219ENST00000553488 EVX2Q03828 476 aa13.1□□□□□ -0.31
ATXN3-219ENST00000553488 FAM69CQ0P6D2 419 aa13.1□□□□□ -0.31
ATXN3-219ENST00000553488 PPRC1Q5VV67 1664 aaKnown RBP13.08□□□□□ -0.31
ATXN3-219ENST00000553488 MIER1Q8N108 512 aa13.07□□□□□ -0.32
ATXN3-219ENST00000553488 IGF1RP08069 1367 aa13.04□□□□□ -0.32
ATXN3-219ENST00000553488 KDM4FA0A1W2PPD8 638 aa13.03□□□□□ -0.32
ATXN3-219ENST00000553488 NPM1P06748 294 aaKnown RBP eCLIP13.03□□□□□ -0.32
ATXN3-219ENST00000553488 VASPP50552 380 aaPredicted RBP13.02□□□□□ -0.33
ATXN3-219ENST00000553488 KIF27Q86VH2 1401 aa13.02□□□□□ -0.33
ATXN3-219ENST00000553488 GLI2P10070 1586 aa13.02□□□□□ -0.33
ATXN3-219ENST00000553488 ABCC2Q92887 1545 aa13.01□□□□□ -0.33
ATXN3-219ENST00000553488 PLCD3Q8N3E9 789 aa13□□□□□ -0.33
ATXN3-219ENST00000553488 IQGAP2Q13576 1575 aa12.98□□□□□ -0.33
ATXN3-219ENST00000553488 SP7Q8TDD2 431 aaPredicted RBP12.98□□□□□ -0.33
ATXN3-219ENST00000553488 UHRF1BP1LA0JNW5 1464 aa12.97□□□□□ -0.33
ATXN3-219ENST00000553488 PTPRGP23470 1445 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms