RNA–Protein interactions for RNA: ENST00000553488.5

ATXN3-219, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,065 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-219ENST00000553488 AEBP2Q6ZN18 517 aaPredicted RBP25.36■■□□□ 1.65
ATXN3-219ENST00000553488 CHIC1Q5VXU3 224 aa24.5■■□□□ 1.51
ATXN3-219ENST00000553488 PHF23Q9BUL5 403 aaPredicted RBP21.56■■□□□ 1.04
ATXN3-219ENST00000553488 SENP3Q9H4L4 574 aaPredicted RBP21.47■■□□□ 1.03
ATXN3-219ENST00000553488 FOXD1Q16676 465 aa20■□□□□ 0.79
ATXN3-219ENST00000553488 PLPPR3Q6T4P5 718 aa19.74■□□□□ 0.75
ATXN3-219ENST00000553488 PPP6R1Q9UPN7 881 aa19.09■□□□□ 0.65
ATXN3-219ENST00000553488 ADRA2BP18089 450 aa18.99■□□□□ 0.63
ATXN3-219ENST00000553488 NISCHQ9Y2I1 1504 aa18.81■□□□□ 0.6
ATXN3-219ENST00000553488 PIAS4Q8N2W9 510 aaPredicted RBP18.72■□□□□ 0.59
ATXN3-219ENST00000553488 MSH5O43196 834 aa18.49■□□□□ 0.55
ATXN3-219ENST00000553488 PPP4R3CPQ6ZMV5 832 aa17.36■□□□□ 0.37
ATXN3-219ENST00000553488 SCAF1Q9H7N4 1312 aaKnown RBP17.32■□□□□ 0.36
ATXN3-219ENST00000553488 MAPK8IP2Q13387 824 aaPredicted RBP17.32■□□□□ 0.36
ATXN3-219ENST00000553488 POTEDQ86YR6 584 aa17.29■□□□□ 0.36
ATXN3-219ENST00000553488 DMRT2Q9Y5R5 561 aa17.14■□□□□ 0.33
ATXN3-219ENST00000553488 ABCC9O60706 1549 aa17.14■□□□□ 0.33
ATXN3-219ENST00000553488 CCDC180Q9P1Z9 1646 aa17.06■□□□□ 0.32
ATXN3-219ENST00000553488 CNKSR2Q8WXI2 1034 aa16.94■□□□□ 0.3
ATXN3-219ENST00000553488 NCBP3Q53F19 620 aaKnown RBP16.78■□□□□ 0.28
ATXN3-219ENST00000553488 HOXD11P31277 338 aaPredicted RBP16.74■□□□□ 0.27
ATXN3-219ENST00000553488 KCNA4P22459 653 aa16.7■□□□□ 0.26
ATXN3-219ENST00000553488 RNF216Q9NWF9 866 aaPredicted RBP16.69■□□□□ 0.26
ATXN3-219ENST00000553488 NPM3O75607 178 aaKnown RBP16.62■□□□□ 0.25
ATXN3-219ENST00000553488 DNAJC5BQ9UF47 199 aa16.32■□□□□ 0.2
ATXN3-219ENST00000553488 RB1CC1Q8TDY2 1594 aa16.26■□□□□ 0.19
ATXN3-219ENST00000553488 DCAF8L1A6NGE4 600 aa16.22■□□□□ 0.19
ATXN3-219ENST00000553488 NACADO15069 1562 aa16.1■□□□□ 0.17
ATXN3-219ENST00000553488 UNC13AQ9UPW8 1703 aa16.02■□□□□ 0.16
ATXN3-219ENST00000553488 RNF39Q9H2S5 420 aa15.87■□□□□ 0.13
ATXN3-219ENST00000553488 BICRAQ9NZM4 1560 aa15.86■□□□□ 0.13
ATXN3-219ENST00000553488 PABPN1Q86U42 306 aaKnown RBP eCLIP15.85■□□□□ 0.13
ATXN3-219ENST00000553488 MYO15BQ96JP2 1530 aa15.84■□□□□ 0.13
ATXN3-219ENST00000553488 SLC4A2P04920 1241 aa15.8■□□□□ 0.12
ATXN3-219ENST00000553488 SLC4A1APQ9BWU0 796 aaKnown RBP15.8■□□□□ 0.12
ATXN3-219ENST00000553488 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.79■□□□□ 0.12
ATXN3-219ENST00000553488 DCAF8L2P0C7V8 631 aa15.74■□□□□ 0.11
ATXN3-219ENST00000553488 C1QBPQ07021 282 aaKnown RBP15.64■□□□□ 0.09
ATXN3-219ENST00000553488 U3KPZ7 1027 aaPredicted RBP15.63■□□□□ 0.09
ATXN3-219ENST00000553488 SHROOM4Q9ULL8 1493 aa15.61■□□□□ 0.09
ATXN3-219ENST00000553488 ZCCHC6Q5VYS8 1495 aaKnown RBP15.59■□□□□ 0.09
ATXN3-219ENST00000553488 DCAF1Q9Y4B6 1507 aa15.56■□□□□ 0.08
ATXN3-219ENST00000553488 CC2D2AQ9P2K1 1620 aa15.54■□□□□ 0.08
ATXN3-219ENST00000553488 CACNB1Q02641 598 aaPredicted RBP15.52■□□□□ 0.08
ATXN3-219ENST00000553488 CECR2Q9BXF3 1484 aa15.47■□□□□ 0.07
ATXN3-219ENST00000553488 SCRIBQ14160 1630 aa15.46■□□□□ 0.07
ATXN3-219ENST00000553488 EIF4G1Q04637 1599 aaKnown RBP15.45■□□□□ 0.06
ATXN3-219ENST00000553488 FOXD4L1Q9NU39 408 aa15.42■□□□□ 0.06
ATXN3-219ENST00000553488 ZBTB22O15209 634 aa15.41■□□□□ 0.06
ATXN3-219ENST00000553488 MYCNP04198 464 aaPredicted RBP15.32■□□□□ 0.04
ATXN3-219ENST00000553488 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.27■□□□□ 0.04
ATXN3-219ENST00000553488 HNRNPUL2Q1KMD3 747 aaKnown RBP15.27■□□□□ 0.04
ATXN3-219ENST00000553488 SPINK5Q9NQ38 1064 aaPredicted RBP15.23■□□□□ 0.03
ATXN3-219ENST00000553488 SAMD1Q6SPF0 538 aaPredicted RBP15.21■□□□□ 0.03
ATXN3-219ENST00000553488 APLP2Q06481 763 aa15.12■□□□□ 0.01
ATXN3-219ENST00000553488 CSRNP3Q8WYN3 585 aa15.11■□□□□ 0.01
ATXN3-219ENST00000553488 CAPN15O75808 1086 aa15.09■□□□□ 0.01
ATXN3-219ENST00000553488 DNAJC5Q9H3Z4 198 aa15.05■□□□□ -0
ATXN3-219ENST00000553488 DSG3P32926 999 aa15.01□□□□□ -0.01
ATXN3-219ENST00000553488 EHMT2Q96KQ7 1210 aa15.01□□□□□ -0.01
ATXN3-219ENST00000553488 ZNF219Q9P2Y4 722 aaPredicted RBP15□□□□□ -0.01
ATXN3-219ENST00000553488 ATF5Q9Y2D1 282 aaPredicted RBP14.98□□□□□ -0.01
ATXN3-219ENST00000553488 TRHP20396 242 aaPredicted RBP14.96□□□□□ -0.01
ATXN3-219ENST00000553488 ATXN8OSP0DMR3 200 aa14.94□□□□□ -0.02
ATXN3-219ENST00000553488 CUX2O14529 1486 aa14.89□□□□□ -0.03
ATXN3-219ENST00000553488 NCAPD3P42695 1498 aa14.84□□□□□ -0.03
ATXN3-219ENST00000553488 ABCB7O75027 752 aa14.79□□□□□ -0.04
ATXN3-219ENST00000553488 ERCC6Q03468 1493 aa14.78□□□□□ -0.04
ATXN3-219ENST00000553488 ATAD2BQ9ULI0 1458 aa14.78□□□□□ -0.04
ATXN3-219ENST00000553488 HMGXB3Q12766 1538 aa14.77□□□□□ -0.04
ATXN3-219ENST00000553488 SMARCA4P51532 1647 aa14.76□□□□□ -0.05
ATXN3-219ENST00000553488 SMARCA2P51531 1590 aa14.73□□□□□ -0.05
ATXN3-219ENST00000553488 POLA2Q14181 598 aa14.72□□□□□ -0.05
ATXN3-219ENST00000553488 NESP48681 1621 aa14.7□□□□□ -0.06
ATXN3-219ENST00000553488 THOC2Q8NI27 1593 aaKnown RBP14.68□□□□□ -0.06
ATXN3-219ENST00000553488 PEG3Q9GZU2 1588 aa14.64□□□□□ -0.07
ATXN3-219ENST00000553488 BAZ1AQ9NRL2 1556 aaPredicted RBP14.62□□□□□ -0.07
ATXN3-219ENST00000553488 BAZ1BQ9UIG0 1483 aaKnown RBP14.61□□□□□ -0.07
ATXN3-219ENST00000553488 LAMC3Q9Y6N6 1575 aa14.58□□□□□ -0.08
ATXN3-219ENST00000553488 KIF21AQ7Z4S6 1674 aa14.57□□□□□ -0.08
ATXN3-219ENST00000553488 MROH2BQ7Z745 1585 aa14.49□□□□□ -0.09
ATXN3-219ENST00000553488 ZBTB12Q9Y330 459 aaPredicted RBP14.44□□□□□ -0.1
ATXN3-219ENST00000553488 PDS5BQ9NTI5 1447 aa14.42□□□□□ -0.1
ATXN3-219ENST00000553488 WDR62O43379 1518 aa14.39□□□□□ -0.11
ATXN3-219ENST00000553488 MRC2Q9UBG0 1479 aa14.37□□□□□ -0.11
ATXN3-219ENST00000553488 CADPSQ9ULU8 1353 aa14.34□□□□□ -0.11
ATXN3-219ENST00000553488 MKRN4PQ13434 485 aaPredicted RBP14.34□□□□□ -0.11
ATXN3-219ENST00000553488 WIZO95785 1651 aa14.33□□□□□ -0.12
ATXN3-219ENST00000553488 CEP164Q9UPV0 1460 aa14.25□□□□□ -0.13
ATXN3-219ENST00000553488 FBLN2P98095 1184 aa14.25□□□□□ -0.13
ATXN3-219ENST00000553488 TRIM41Q8WV44 630 aa14.24□□□□□ -0.13
ATXN3-219ENST00000553488 RBM42Q9BTD8 480 aaKnown RBP14.24□□□□□ -0.13
ATXN3-219ENST00000553488 OSCARQ8IYS5 282 aa14.22□□□□□ -0.13
ATXN3-219ENST00000553488 FANCD2Q9BXW9 1451 aa14.21□□□□□ -0.13
ATXN3-219ENST00000553488 CFTRP13569 1480 aa14.18□□□□□ -0.14
ATXN3-219ENST00000553488 PRDM2Q13029 1718 aa14.15□□□□□ -0.14
ATXN3-219ENST00000553488 URB2Q14146 1524 aaKnown RBP14.15□□□□□ -0.14
ATXN3-219ENST00000553488 TOP2AP11388 1531 aaKnown RBP14.13□□□□□ -0.15
ATXN3-219ENST00000553488 RSF1Q96T23 1441 aaPredicted RBP14.08□□□□□ -0.15
ATXN3-219ENST00000553488 SPDYE2BA6NHP3 402 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 91.4 ms