RNA–Protein interactions for RNA: ENST00000550898.1

KRR1-204, Transcript of KRR1, small subunit processome component homolog, humanhuman

TSL 2

Gene KRR1, Length 694 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KRR1-204ENST00000550898 TOP2AP11388 1531 aaKnown RBP12.93□□□□□ -0.34
KRR1-204ENST00000550898 C19orf67A6NJJ6 358 aa12.9□□□□□ -0.34
KRR1-204ENST00000550898 PRR29P0C7W0 189 aa12.89□□□□□ -0.35
KRR1-204ENST00000550898 ERCC6Q03468 1493 aa12.87□□□□□ -0.35
KRR1-204ENST00000550898 LAMC3Q9Y6N6 1575 aa12.86□□□□□ -0.35
KRR1-204ENST00000550898 NESP48681 1621 aa12.85□□□□□ -0.35
KRR1-204ENST00000550898 CADPSQ9ULU8 1353 aa12.84□□□□□ -0.35
KRR1-204ENST00000550898 PDS5BQ9NTI5 1447 aa12.8□□□□□ -0.36
KRR1-204ENST00000550898 SPDYE4A6NLX3 237 aa12.77□□□□□ -0.37
KRR1-204ENST00000550898 CFTRP13569 1480 aa12.76□□□□□ -0.37
KRR1-204ENST00000550898 CCDC88BA6NC98 1476 aa12.75□□□□□ -0.37
KRR1-204ENST00000550898 SUPT5HO00267 1087 aaKnown RBP12.73□□□□□ -0.37
KRR1-204ENST00000550898 GABBR2O75899 941 aa12.73□□□□□ -0.37
KRR1-204ENST00000550898 FARP1Q9Y4F1 1045 aaPredicted RBP12.73□□□□□ -0.37
KRR1-204ENST00000550898 CUX2O14529 1486 aa12.72□□□□□ -0.37
KRR1-204ENST00000550898 CREBZFQ9NS37 354 aa12.7□□□□□ -0.38
KRR1-204ENST00000550898 FANCD2Q9BXW9 1451 aa12.69□□□□□ -0.38
KRR1-204ENST00000550898 CEP164Q9UPV0 1460 aa12.69□□□□□ -0.38
KRR1-204ENST00000550898 MRC2Q9UBG0 1479 aa12.66□□□□□ -0.38
KRR1-204ENST00000550898 THOC2Q8NI27 1593 aaKnown RBP12.66□□□□□ -0.38
KRR1-204ENST00000550898 KIF21AQ7Z4S6 1674 aa12.65□□□□□ -0.38
KRR1-204ENST00000550898 CD44P16070 742 aaKnown RBP12.64□□□□□ -0.39
KRR1-204ENST00000550898 WDR62O43379 1518 aa12.6□□□□□ -0.39
KRR1-204ENST00000550898 POTEIP0CG38 1075 aa12.56□□□□□ -0.4
KRR1-204ENST00000550898 PRDM2Q13029 1718 aa12.55□□□□□ -0.4
KRR1-204ENST00000550898 STAG3Q9UJ98 1225 aa12.55□□□□□ -0.4
KRR1-204ENST00000550898 PROM2Q8N271 834 aa12.54□□□□□ -0.4
KRR1-204ENST00000550898 URB2Q14146 1524 aaKnown RBP12.53□□□□□ -0.4
KRR1-204ENST00000550898 MNX1P50219 401 aaPredicted RBP12.53□□□□□ -0.4
KRR1-204ENST00000550898 ABCC8Q09428 1581 aa12.5□□□□□ -0.41
KRR1-204ENST00000550898 TOPBP1Q92547 1522 aa12.47□□□□□ -0.41
KRR1-204ENST00000550898 ZRANB1Q9UGI0 708 aa12.46□□□□□ -0.41
KRR1-204ENST00000550898 DNMBPQ6XZF7 1577 aa12.46□□□□□ -0.42
KRR1-204ENST00000550898 ZNF579Q8NAF0 562 aaKnown RBP12.44□□□□□ -0.42
KRR1-204ENST00000550898 IFT140Q96RY7 1462 aa12.42□□□□□ -0.42
KRR1-204ENST00000550898 GALR2O43603 387 aaPredicted RBP12.39□□□□□ -0.43
KRR1-204ENST00000550898 PHF12Q96QT6 1004 aa12.38□□□□□ -0.43
KRR1-204ENST00000550898 POLA1P09884 1462 aaPredicted RBP12.37□□□□□ -0.43
KRR1-204ENST00000550898 CUX1P39880 1505 aa12.37□□□□□ -0.43
KRR1-204ENST00000550898 LHX8Q68G74 356 aa12.36□□□□□ -0.43
KRR1-204ENST00000550898 FGD5Q6ZNL6 1462 aa12.34□□□□□ -0.43
KRR1-204ENST00000550898 SOGA1O94964 1423 aa12.33□□□□□ -0.44
KRR1-204ENST00000550898 WRNQ14191 1432 aaPredicted RBP eCLIP12.33□□□□□ -0.44
KRR1-204ENST00000550898 ZNF608Q9ULD9 1512 aaPredicted RBP12.32□□□□□ -0.44
KRR1-204ENST00000550898 RAD54L2Q9Y4B4 1467 aa12.3□□□□□ -0.44
KRR1-204ENST00000550898 TARBP1Q13395 1621 aaKnown RBP12.29□□□□□ -0.44
KRR1-204ENST00000550898 DNAJC5Q9H3Z4 198 aa12.28□□□□□ -0.44
KRR1-204ENST00000550898 EIF4G3O43432 1585 aaKnown RBP12.27□□□□□ -0.44
KRR1-204ENST00000550898 CLCN6P51797 869 aa12.27□□□□□ -0.45
KRR1-204ENST00000550898 WDR97A6NE52 1622 aa12.26□□□□□ -0.45
KRR1-204ENST00000550898 TOP2BQ02880 1626 aa12.26□□□□□ -0.45
KRR1-204ENST00000550898 NPM1P06748 294 aaKnown RBP eCLIP12.26□□□□□ -0.45
KRR1-204ENST00000550898 DCBLD2Q96PD2 775 aa12.26□□□□□ -0.45
KRR1-204ENST00000550898 AQRO60306 1485 aaKnown RBP eCLIP12.26□□□□□ -0.454e-7■■■□□ 15.7
KRR1-204ENST00000550898 TDRD9Q8NDG6 1382 aaKnown RBP12.25□□□□□ -0.45
KRR1-204ENST00000550898 SYNJ1O43426 1573 aa12.25□□□□□ -0.45
KRR1-204ENST00000550898 BIVM-ERCC5R4GMW8 1640 aa12.24□□□□□ -0.45
KRR1-204ENST00000550898 ABCA10Q8WWZ4 1543 aa12.23□□□□□ -0.45
KRR1-204ENST00000550898 PELP1Q8IZL8 1130 aaKnown RBP12.21□□□□□ -0.45
KRR1-204ENST00000550898 PAK3O75914 559 aaPredicted RBP12.2□□□□□ -0.46
KRR1-204ENST00000550898 GRIN2BQ13224 1484 aa12.2□□□□□ -0.46
KRR1-204ENST00000550898 MS4A3Q96HJ5 214 aa12.19□□□□□ -0.46
KRR1-204ENST00000550898 TSPYL2Q9H2G4 693 aaPredicted RBP12.19□□□□□ -0.46
KRR1-204ENST00000550898 GAPVD1Q14C86 1478 aa12.19□□□□□ -0.46
KRR1-204ENST00000550898 SNAPC4Q5SXM2 1469 aa12.18□□□□□ -0.46
KRR1-204ENST00000550898 MAGI1Q96QZ7 1491 aaPredicted RBP12.17□□□□□ -0.46
KRR1-204ENST00000550898 POTEB2H3BUK9 544 aa12.17□□□□□ -0.46
KRR1-204ENST00000550898 FKBP8Q14318 412 aa12.17□□□□□ -0.46
KRR1-204ENST00000550898 CCDC61Q9Y6R9 512 aa12.16□□□□□ -0.46
KRR1-204ENST00000550898 ABCA5Q8WWZ7 1642 aa12.15□□□□□ -0.46
KRR1-204ENST00000550898 MIER1Q8N108 512 aa12.15□□□□□ -0.46
KRR1-204ENST00000550898 RASEFQ8IZ41 740 aa12.14□□□□□ -0.47
KRR1-204ENST00000550898 CHMP7Q8WUX9 453 aaPredicted RBP12.12□□□□□ -0.47
KRR1-204ENST00000550898 SYNJ2O15056 1496 aa12.12□□□□□ -0.47
KRR1-204ENST00000550898 TRPC6Q9Y210 931 aa12.1□□□□□ -0.47
KRR1-204ENST00000550898 ERICH3Q5RHP9 1530 aa12.09□□□□□ -0.47
KRR1-204ENST00000550898 KIF27Q86VH2 1401 aa12.09□□□□□ -0.47
KRR1-204ENST00000550898 PBRM1Q86U86 1689 aa12.09□□□□□ -0.47
KRR1-204ENST00000550898 KIF12Q96FN5 646 aa12.08□□□□□ -0.48
KRR1-204ENST00000550898 FHAD1B1AJZ9 1412 aa12.07□□□□□ -0.48
KRR1-204ENST00000550898 ATMINO43313 823 aaPredicted RBP12.06□□□□□ -0.48
KRR1-204ENST00000550898 ASTLQ6HA08 431 aaPredicted RBP12.06□□□□□ -0.48
KRR1-204ENST00000550898 ADAMTS12P58397 1594 aa12.05□□□□□ -0.48
KRR1-204ENST00000550898 TRIM41Q8WV44 630 aa12.05□□□□□ -0.48
KRR1-204ENST00000550898 OTUD5Q96G74 571 aa12.05□□□□□ -0.48
KRR1-204ENST00000550898 CHD1O14646 1710 aa12.05□□□□□ -0.48
KRR1-204ENST00000550898 GRIN2AQ12879 1464 aa12.03□□□□□ -0.48
KRR1-204ENST00000550898 MAP3K13O43283 966 aa12.02□□□□□ -0.49
KRR1-204ENST00000550898 POTEJP0CG39 1038 aa12.02□□□□□ -0.49
KRR1-204ENST00000550898 NUBP1P53384 320 aa12.02□□□□□ -0.49
KRR1-204ENST00000550898 PLCD3Q8N3E9 789 aa12.02□□□□□ -0.49
KRR1-204ENST00000550898 ATN1P54259 1190 aaPredicted RBP12□□□□□ -0.49
KRR1-204ENST00000550898 IGF1RP08069 1367 aa12□□□□□ -0.49
KRR1-204ENST00000550898 CLASP1Q7Z460 1538 aa11.99□□□□□ -0.49
KRR1-204ENST00000550898 NUP160Q12769 1436 aa11.98□□□□□ -0.49
KRR1-204ENST00000550898 ARHGEF11O15085 1522 aa11.97□□□□□ -0.49
KRR1-204ENST00000550898 METRNQ9UJH8 293 aa11.97□□□□□ -0.49
KRR1-204ENST00000550898 BMP2KQ9NSY1 1161 aaPredicted RBP11.96□□□□□ -0.49
KRR1-204ENST00000550898 CUL7Q14999 1698 aa11.96□□□□□ -0.5
KRR1-204ENST00000550898 PLEKHG5O94827 1062 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms