RNA–Protein interactions for RNA: ENST00000548645.5

NPAS3-206, Transcript of neuronal PAS domain protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NPAS3, Length 2,926 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-206ENST00000548645 TIMELESSQ9UNS1 1208 aa32.78■■■□□ 2.84
NPAS3-206ENST00000548645 PPP1R15AO75807 674 aaPredicted RBP32.75■■■□□ 2.83
NPAS3-206ENST00000548645 NCAPD3P42695 1498 aa32.72■■■□□ 2.83
NPAS3-206ENST00000548645 CCER2I3L3R5 266 aa32.71■■■□□ 2.83
NPAS3-206ENST00000548645 SIN3AQ96ST3 1273 aa32.69■■■□□ 2.82
NPAS3-206ENST00000548645 LRRC9Q6ZRR7 1453 aa32.68■■■□□ 2.82
NPAS3-206ENST00000548645 HMGXB3Q12766 1538 aa32.67■■■□□ 2.82
NPAS3-206ENST00000548645 RBM19Q9Y4C8 960 aaKnown RBP32.63■■■□□ 2.81
NPAS3-206ENST00000548645 PHLDB1Q86UU1 1377 aa32.63■■■□□ 2.81
NPAS3-206ENST00000548645 ANP32CO43423 234 aa32.62■■■□□ 2.81
NPAS3-206ENST00000548645 FAM50AQ14320 339 aaKnown RBP32.6■■■□□ 2.81
NPAS3-206ENST00000548645 CFTRP13569 1480 aa32.59■■■□□ 2.81
NPAS3-206ENST00000548645 CC2D2AQ9P2K1 1620 aa32.58■■■□□ 2.81
NPAS3-206ENST00000548645 IGF1RP08069 1367 aa32.57■■■□□ 2.8
NPAS3-206ENST00000548645 BCL11AQ9H165 835 aa32.56■■■□□ 2.8
NPAS3-206ENST00000548645 TRIM52Q96A61 297 aa32.54■■■□□ 2.8
NPAS3-206ENST00000548645 FHAD1B1AJZ9 1412 aa32.53■■■□□ 2.8
NPAS3-206ENST00000548645 CFAP43Q8NDM7 1665 aa32.47■■■□□ 2.79
NPAS3-206ENST00000548645 CARMIL1Q5VZK9 1371 aa32.47■■■□□ 2.79
NPAS3-206ENST00000548645 HIRIP3Q9BW71 556 aaPredicted RBP32.45■■■□□ 2.78
NPAS3-206ENST00000548645 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.4■■■□□ 2.78
NPAS3-206ENST00000548645 PCF11O94913 1555 aaKnown RBP32.37■■■□□ 2.77
NPAS3-206ENST00000548645 DNAJC5BQ9UF47 199 aa32.36■■■□□ 2.77
NPAS3-206ENST00000548645 TONSLQ96HA7 1378 aa32.34■■■□□ 2.77
NPAS3-206ENST00000548645 PRDM2Q13029 1718 aa32.32■■■□□ 2.77
NPAS3-206ENST00000548645 ATP1B4Q9UN42 357 aaPredicted RBP32.28■■■□□ 2.76
NPAS3-206ENST00000548645 FYCO1Q9BQS8 1478 aa32.25■■■□□ 2.75
NPAS3-206ENST00000548645 P3H3Q8IVL6 736 aa32.23■■■□□ 2.75
NPAS3-206ENST00000548645 FGD5Q6ZNL6 1462 aa32.22■■■□□ 2.75
NPAS3-206ENST00000548645 FANCIQ9NVI1 1328 aa32.21■■■□□ 2.75
NPAS3-206ENST00000548645 MSH5O43196 834 aa32.19■■■□□ 2.74
NPAS3-206ENST00000548645 CASKIN1Q8WXD9 1431 aa32.19■■■□□ 2.74
NPAS3-206ENST00000548645 CCDC18Q5T9S5 1454 aa32.18■■■□□ 2.74
NPAS3-206ENST00000548645 CDK11AQ9UQ88 783 aaPredicted RBP32.18■■■□□ 2.74
NPAS3-206ENST00000548645 AQRO60306 1485 aaKnown RBP eCLIP32.17■■■□□ 2.74
NPAS3-206ENST00000548645 UACAQ9BZF9 1416 aa32.17■■■□□ 2.74
NPAS3-206ENST00000548645 FHOD3Q2V2M9 1422 aa32.16■■■□□ 2.74
NPAS3-206ENST00000548645 HNRNPUQ00839 825 aaKnown RBP eCLIP32.16■■■□□ 2.74
NPAS3-206ENST00000548645 FGD6Q6ZV73 1430 aa32.15■■■□□ 2.74
NPAS3-206ENST00000548645 EFCAB5A4FU69 1503 aa32.15■■■□□ 2.74
NPAS3-206ENST00000548645 HFM1A2PYH4 1435 aa32.12■■■□□ 2.73
NPAS3-206ENST00000548645 ERICH6BQ5W0A0 696 aa32.09■■■□□ 2.73
NPAS3-206ENST00000548645 CADPSQ9ULU8 1353 aa32.08■■■□□ 2.73
NPAS3-206ENST00000548645 PTPN23Q9H3S7 1636 aa32.05■■■□□ 2.72
NPAS3-206ENST00000548645 ERICH6Q7L0X2 663 aa32.04■■■□□ 2.72
NPAS3-206ENST00000548645 FMN1Q68DA7 1419 aa32■■■□□ 2.71
NPAS3-206ENST00000548645 IRX6P78412 446 aaPredicted RBP31.99■■■□□ 2.71
NPAS3-206ENST00000548645 PTPRKQ15262 1439 aa31.99■■■□□ 2.71
NPAS3-206ENST00000548645 MTUS2Q5JR59 1369 aa31.97■■■□□ 2.71
NPAS3-206ENST00000548645 NAIPQ13075 1403 aa31.97■■■□□ 2.71
NPAS3-206ENST00000548645 KDM5BQ9UGL1 1544 aa31.96■■■□□ 2.71
NPAS3-206ENST00000548645 PPP4R2Q9NY27 417 aa31.94■■■□□ 2.7
NPAS3-206ENST00000548645 NESP48681 1621 aa31.93■■■□□ 2.7
NPAS3-206ENST00000548645 WASHC2AQ641Q2 1341 aa31.92■■■□□ 2.7
NPAS3-206ENST00000548645 SNAPC4Q5SXM2 1469 aa31.89■■■□□ 2.7
NPAS3-206ENST00000548645 HSPA5P11021 654 aaKnown RBP31.89■■■□□ 2.69
NPAS3-206ENST00000548645 CTTNBP2Q8WZ74 1663 aa31.88■■■□□ 2.69
NPAS3-206ENST00000548645 MYOM3Q5VTT5 1437 aa31.86■■■□□ 2.69
NPAS3-206ENST00000548645 ABCA10Q8WWZ4 1543 aa31.86■■■□□ 2.69
NPAS3-206ENST00000548645 MYT1LQ9UL68 1186 aa31.86■■■□□ 2.69
NPAS3-206ENST00000548645 CUL7Q14999 1698 aa31.85■■■□□ 2.69
NPAS3-206ENST00000548645 NCOA2Q15596 1464 aa31.84■■■□□ 2.69
NPAS3-206ENST00000548645 EIF4G2P78344 907 aaKnown RBP eCLIP31.82■■■□□ 2.68
NPAS3-206ENST00000548645 CNTLNQ9NXG0 1405 aa31.81■■■□□ 2.68
NPAS3-206ENST00000548645 RAD54L2Q9Y4B4 1467 aa31.78■■■□□ 2.68
NPAS3-206ENST00000548645 FANCD2Q9BXW9 1451 aa31.77■■■□□ 2.68
NPAS3-206ENST00000548645 DNMBPQ6XZF7 1577 aa31.75■■■□□ 2.67
NPAS3-206ENST00000548645 SUPT6HQ7KZ85 1726 aaKnown RBP31.75■■■□□ 2.67
NPAS3-206ENST00000548645 EHBP1L1Q8N3D4 1523 aa31.71■■■□□ 2.67
NPAS3-206ENST00000548645 CCDC184Q52MB2 194 aa31.71■■■□□ 2.67
NPAS3-206ENST00000548645 ZBED9Q6R2W3 1325 aa31.71■■■□□ 2.67
NPAS3-206ENST00000548645 THOC2Q8NI27 1593 aaKnown RBP31.71■■■□□ 2.67
NPAS3-206ENST00000548645 POLA1P09884 1462 aaPredicted RBP31.7■■■□□ 2.67
NPAS3-206ENST00000548645 PRKRIP1Q9H875 184 aaPredicted RBP31.7■■■□□ 2.67
NPAS3-206ENST00000548645 HECW1Q76N89 1606 aa31.69■■■□□ 2.66
NPAS3-206ENST00000548645 GRIN2BQ13224 1484 aa31.68■■■□□ 2.66
NPAS3-206ENST00000548645 LRRIQ1Q96JM4 1722 aa31.67■■■□□ 2.66
NPAS3-206ENST00000548645 SAMD9Q5K651 1589 aa31.67■■■□□ 2.66
NPAS3-206ENST00000548645 FAM9BQ8IZU0 186 aa31.66■■■□□ 2.66
NPAS3-206ENST00000548645 MRS2Q9HD23 443 aa31.65■■■□□ 2.66
NPAS3-206ENST00000548645 RRP7BPQ9NSQ0 103 aa31.65■■■□□ 2.66
NPAS3-206ENST00000548645 NCOA1Q15788 1441 aa31.65■■■□□ 2.66
NPAS3-206ENST00000548645 TOPBP1Q92547 1522 aa31.65■■■□□ 2.66
NPAS3-206ENST00000548645 B4GALNT3Q6L9W6 998 aa31.65■■■□□ 2.66
NPAS3-206ENST00000548645 CCDC7Q96M83 1385 aa31.64■■■□□ 2.66
NPAS3-206ENST00000548645 GCC2Q8IWJ2 1684 aa31.64■■■□□ 2.66
NPAS3-206ENST00000548645 UGGT2Q9NYU1 1516 aa31.64■■■□□ 2.66
NPAS3-206ENST00000548645 DENND4BO75064 1496 aaPredicted RBP31.63■■■□□ 2.65
NPAS3-206ENST00000548645 AKNAQ7Z591 1439 aa31.62■■■□□ 2.65
NPAS3-206ENST00000548645 ARHGEF11O15085 1522 aa31.6■■■□□ 2.65
NPAS3-206ENST00000548645 TCOF1Q13428 1488 aaKnown RBP31.59■■■□□ 2.65
NPAS3-206ENST00000548645 L3MBTL2Q969R5 705 aa31.57■■■□□ 2.64
NPAS3-206ENST00000548645 CHIC2Q9UKJ5 165 aa31.57■■■□□ 2.64
NPAS3-206ENST00000548645 C11orf95C9JLR9 678 aaPredicted RBP31.56■■■□□ 2.64
NPAS3-206ENST00000548645 MPHOSPH9Q99550 1183 aa31.55■■■□□ 2.64
NPAS3-206ENST00000548645 DEKP35659 375 aaKnown RBP31.51■■■□□ 2.63
NPAS3-206ENST00000548645 NOP58Q9Y2X3 529 aaKnown RBP31.5■■■□□ 2.63
NPAS3-206ENST00000548645 MAGI3Q5TCQ9 1506 aa31.47■■■□□ 2.63
NPAS3-206ENST00000548645 KDM6BO15054 1643 aa31.47■■■□□ 2.63
NPAS3-206ENST00000548645 KIF21AQ7Z4S6 1674 aa31.45■■■□□ 2.63
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms