RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 SENP3-EIF4A1A0A087X0R7 540 aa21.13■□□□□ 0.97
HOXC11-202ENST00000546378 CARMIL1Q5VZK9 1371 aa21.12■□□□□ 0.97
HOXC11-202ENST00000546378 ERCC6Q03468 1493 aa21.12■□□□□ 0.97
HOXC11-202ENST00000546378 KANK4Q5T7N3 995 aaPredicted RBP21.12■□□□□ 0.97
HOXC11-202ENST00000546378 FAM50AQ14320 339 aaKnown RBP21.12■□□□□ 0.97
HOXC11-202ENST00000546378 POLA1P09884 1462 aaPredicted RBP21.1■□□□□ 0.97
HOXC11-202ENST00000546378 LAMC3Q9Y6N6 1575 aa21.1■□□□□ 0.97
HOXC11-202ENST00000546378 URB2Q14146 1524 aaKnown RBP21.1■□□□□ 0.97
HOXC11-202ENST00000546378 FBLN2P98095 1184 aa21.05■□□□□ 0.96
HOXC11-202ENST00000546378 SIN3AQ96ST3 1273 aa21.04■□□□□ 0.96
HOXC11-202ENST00000546378 TSHZ2Q9NRE2 1034 aa21.04■□□□□ 0.96
HOXC11-202ENST00000546378 DNMBPQ6XZF7 1577 aa21.01■□□□□ 0.95
HOXC11-202ENST00000546378 PRXQ9BXM0 1461 aa21.01■□□□□ 0.95
HOXC11-202ENST00000546378 NEFLP07196 543 aa21■□□□□ 0.95
HOXC11-202ENST00000546378 KIF21BO75037 1637 aa20.95■□□□□ 0.95
HOXC11-202ENST00000546378 AQRO60306 1485 aaKnown RBP eCLIP20.95■□□□□ 0.94
HOXC11-202ENST00000546378 PRDM2Q13029 1718 aa20.94■□□□□ 0.94
HOXC11-202ENST00000546378 KIF21AQ7Z4S6 1674 aa20.94■□□□□ 0.94
HOXC11-202ENST00000546378 ARID3CA6NKF2 412 aa20.88■□□□□ 0.93
HOXC11-202ENST00000546378 GAPVD1Q14C86 1478 aa20.87■□□□□ 0.93
HOXC11-202ENST00000546378 MRC2Q9UBG0 1479 aa20.87■□□□□ 0.93
HOXC11-202ENST00000546378 ABCA10Q8WWZ4 1543 aa20.87■□□□□ 0.93
HOXC11-202ENST00000546378 POLR3GLQ9BT43 218 aa20.86■□□□□ 0.93
HOXC11-202ENST00000546378 ERICH6Q7L0X2 663 aa20.85■□□□□ 0.93
HOXC11-202ENST00000546378 ANP32EQ9BTT0 268 aa20.83■□□□□ 0.92
HOXC11-202ENST00000546378 VPS8Q8N3P4 1428 aa20.83■□□□□ 0.92
HOXC11-202ENST00000546378 ERICH3Q5RHP9 1530 aa20.8■□□□□ 0.92
HOXC11-202ENST00000546378 CHMP7Q8WUX9 453 aaPredicted RBP20.79■□□□□ 0.92
HOXC11-202ENST00000546378 ZNF608Q9ULD9 1512 aaPredicted RBP20.79■□□□□ 0.92
HOXC11-202ENST00000546378 ARAP1Q96P48 1450 aa20.77■□□□□ 0.92
HOXC11-202ENST00000546378 DHX57Q6P158 1386 aaKnown RBP20.76■□□□□ 0.91
HOXC11-202ENST00000546378 BCL11AQ9H165 835 aa20.76■□□□□ 0.91
HOXC11-202ENST00000546378 FHOD3Q2V2M9 1422 aa20.72■□□□□ 0.91
HOXC11-202ENST00000546378 ARHGAP35Q9NRY4 1499 aa20.72■□□□□ 0.91
HOXC11-202ENST00000546378 HNRNPUQ00839 825 aaKnown RBP eCLIP20.71■□□□□ 0.91
HOXC11-202ENST00000546378 ANP32CO43423 234 aa20.7■□□□□ 0.9
HOXC11-202ENST00000546378 RBM19Q9Y4C8 960 aaKnown RBP20.69■□□□□ 0.9
HOXC11-202ENST00000546378 IFT140Q96RY7 1462 aa20.62■□□□□ 0.89
HOXC11-202ENST00000546378 FAM9BQ8IZU0 186 aa20.61■□□□□ 0.89
HOXC11-202ENST00000546378 CHIC2Q9UKJ5 165 aa20.61■□□□□ 0.89
HOXC11-202ENST00000546378 GRIN2BQ13224 1484 aa20.59■□□□□ 0.89
HOXC11-202ENST00000546378 NBR1Q14596 966 aa20.58■□□□□ 0.89
HOXC11-202ENST00000546378 TARBP1Q13395 1621 aaKnown RBP20.58■□□□□ 0.88
HOXC11-202ENST00000546378 FHAD1B1AJZ9 1412 aa20.56■□□□□ 0.88
HOXC11-202ENST00000546378 RAB3GAP2Q9H2M9 1393 aa20.56■□□□□ 0.88
HOXC11-202ENST00000546378 SNAPC4Q5SXM2 1469 aa20.55■□□□□ 0.88
HOXC11-202ENST00000546378 WDR62O43379 1518 aa20.55■□□□□ 0.88
HOXC11-202ENST00000546378 ABCA5Q8WWZ7 1642 aa20.52■□□□□ 0.88
HOXC11-202ENST00000546378 ZNF326Q5BKZ1 582 aaKnown RBP20.52■□□□□ 0.88
HOXC11-202ENST00000546378 CCNB3Q8WWL7 1395 aa20.5■□□□□ 0.87
HOXC11-202ENST00000546378 B4GALNT3Q6L9W6 998 aa20.48■□□□□ 0.87
HOXC11-202ENST00000546378 CUL7Q14999 1698 aa20.48■□□□□ 0.87
HOXC11-202ENST00000546378 SALL2Q9Y467 1007 aaPredicted RBP20.47■□□□□ 0.87
HOXC11-202ENST00000546378 CDK11AQ9UQ88 783 aaPredicted RBP20.45■□□□□ 0.86
HOXC11-202ENST00000546378 FOXD1Q16676 465 aa20.45■□□□□ 0.86
HOXC11-202ENST00000546378 RRP7BPQ9NSQ0 103 aa20.44■□□□□ 0.86
HOXC11-202ENST00000546378 WDR97A6NE52 1622 aa20.44■□□□□ 0.86
HOXC11-202ENST00000546378 JPH4Q96JJ6 628 aa20.44■□□□□ 0.86
HOXC11-202ENST00000546378 MTUS2Q5JR59 1369 aa20.42■□□□□ 0.86
HOXC11-202ENST00000546378 THOC2Q8NI27 1593 aaKnown RBP20.41■□□□□ 0.86
HOXC11-202ENST00000546378 TONSLQ96HA7 1378 aa20.39■□□□□ 0.86
HOXC11-202ENST00000546378 MSH5O43196 834 aa20.39■□□□□ 0.86
HOXC11-202ENST00000546378 EIF4G3O43432 1585 aaKnown RBP20.39■□□□□ 0.85
HOXC11-202ENST00000546378 FMN1Q68DA7 1419 aa20.38■□□□□ 0.85
HOXC11-202ENST00000546378 NPM2Q86SE8 214 aaKnown RBP20.36■□□□□ 0.85
HOXC11-202ENST00000546378 PBRM1Q86U86 1689 aa20.34■□□□□ 0.85
HOXC11-202ENST00000546378 GRIN2AQ12879 1464 aa20.34■□□□□ 0.85
HOXC11-202ENST00000546378 ADAMTS12P58397 1594 aa20.34■□□□□ 0.85
HOXC11-202ENST00000546378 CCDC184Q52MB2 194 aa20.33■□□□□ 0.85
HOXC11-202ENST00000546378 PCF11O94913 1555 aaKnown RBP20.31■□□□□ 0.84
HOXC11-202ENST00000546378 PHLDB1Q86UU1 1377 aa20.3■□□□□ 0.84
HOXC11-202ENST00000546378 CLSPNQ9HAW4 1339 aa20.3■□□□□ 0.84
HOXC11-202ENST00000546378 SYNJ2O15056 1496 aa20.28■□□□□ 0.84
HOXC11-202ENST00000546378 CASKIN1Q8WXD9 1431 aa20.28■□□□□ 0.84
HOXC11-202ENST00000546378 IQGAP2Q13576 1575 aa20.28■□□□□ 0.84
HOXC11-202ENST00000546378 LRRC9Q6ZRR7 1453 aa20.28■□□□□ 0.84
HOXC11-202ENST00000546378 MRS2Q9HD23 443 aa20.28■□□□□ 0.84
HOXC11-202ENST00000546378 RTN4Q9NQC3 1192 aaKnown RBP20.27■□□□□ 0.84
HOXC11-202ENST00000546378 EFCAB5A4FU69 1503 aa20.27■□□□□ 0.83
HOXC11-202ENST00000546378 KIAA0586Q9BVV6 1533 aa20.26■□□□□ 0.83
HOXC11-202ENST00000546378 CTTNBP2Q8WZ74 1663 aa20.26■□□□□ 0.83
HOXC11-202ENST00000546378 PPP1R15AO75807 674 aaPredicted RBP20.26■□□□□ 0.83
HOXC11-202ENST00000546378 MAGI1Q96QZ7 1491 aaPredicted RBP20.26■□□□□ 0.83
HOXC11-202ENST00000546378 ZNF777Q9ULD5 760 aaPredicted RBP20.24■□□□□ 0.83
HOXC11-202ENST00000546378 TIAM1Q13009 1591 aa20.23■□□□□ 0.83
HOXC11-202ENST00000546378 SETD5Q9C0A6 1442 aa20.22■□□□□ 0.83
HOXC11-202ENST00000546378 FYCO1Q9BQS8 1478 aa20.2■□□□□ 0.82
HOXC11-202ENST00000546378 CARMIL2Q6F5E8 1435 aa20.18■□□□□ 0.82
HOXC11-202ENST00000546378 HSPA5P11021 654 aaKnown RBP20.17■□□□□ 0.82
HOXC11-202ENST00000546378 CDK13Q14004 1512 aaKnown RBP20.15■□□□□ 0.82
HOXC11-202ENST00000546378 PRG4Q92954 1404 aaPredicted RBP20.14■□□□□ 0.81
HOXC11-202ENST00000546378 PLB1Q6P1J6 1458 aa20.13■□□□□ 0.81
HOXC11-202ENST00000546378 CEP170Q5SW79 1584 aa20.13■□□□□ 0.81
HOXC11-202ENST00000546378 DISP1Q96F81 1524 aa20.11■□□□□ 0.81
HOXC11-202ENST00000546378 PLEKHD1A6NEE1 506 aa20.11■□□□□ 0.81
HOXC11-202ENST00000546378 DEKP35659 375 aaKnown RBP20.11■□□□□ 0.81
HOXC11-202ENST00000546378 RRBP1Q9P2E9 1410 aaKnown RBP20.1■□□□□ 0.81
HOXC11-202ENST00000546378 SAMD9Q5K651 1589 aa20.09■□□□□ 0.81
HOXC11-202ENST00000546378 PTPRGP23470 1445 aa20.08■□□□□ 0.81
HOXC11-202ENST00000546378 ZNF644Q9H582 1327 aaPredicted RBP20.08■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms