RNA–Protein interactions for RNA: ENST00000546345.5

CCDC60-205, Transcript of coiled-coil domain containing 60, humanhuman

TSL 1 (best)

Gene CCDC60, Length 865 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60-205ENST00000546345 PDS5BQ9NTI5 1447 aa13.59□□□□□ -0.23
CCDC60-205ENST00000546345 REM2Q8IYK8 340 aaPredicted RBP13.52□□□□□ -0.25
CCDC60-205ENST00000546345 MROH2BQ7Z745 1585 aa13.49□□□□□ -0.25
CCDC60-205ENST00000546345 FBXO3Q9UK99 471 aa13.48□□□□□ -0.25
CCDC60-205ENST00000546345 STAG3Q9UJ98 1225 aa13.46□□□□□ -0.25
CCDC60-205ENST00000546345 SPDYE1Q8NFV5 336 aaPredicted RBP13.45□□□□□ -0.26
CCDC60-205ENST00000546345 CADPSQ9ULU8 1353 aa13.45□□□□□ -0.26
CCDC60-205ENST00000546345 ARHGEF11O15085 1522 aa13.44□□□□□ -0.26
CCDC60-205ENST00000546345 CEP164Q9UPV0 1460 aa13.44□□□□□ -0.26
CCDC60-205ENST00000546345 CLEC11AQ9Y240 323 aa13.4□□□□□ -0.26
CCDC60-205ENST00000546345 PRDM2Q13029 1718 aa13.39□□□□□ -0.27
CCDC60-205ENST00000546345 URB2Q14146 1524 aaKnown RBP13.38□□□□□ -0.27
CCDC60-205ENST00000546345 FANCD2Q9BXW9 1451 aa13.37□□□□□ -0.27
CCDC60-205ENST00000546345 WIZO95785 1651 aa13.37□□□□□ -0.27
CCDC60-205ENST00000546345 PITPNM1O00562 1244 aa13.35□□□□□ -0.27
CCDC60-205ENST00000546345 CHD1O14646 1710 aa13.34□□□□□ -0.27
CCDC60-205ENST00000546345 ARAP1Q96P48 1450 aa13.29□□□□□ -0.28
CCDC60-205ENST00000546345 PRR29P0C7W0 189 aa13.29□□□□□ -0.28
CCDC60-205ENST00000546345 ZNF608Q9ULD9 1512 aaPredicted RBP13.28□□□□□ -0.28
CCDC60-205ENST00000546345 EIF4G3O43432 1585 aaKnown RBP13.28□□□□□ -0.28
CCDC60-205ENST00000546345 CFTRP13569 1480 aa13.27□□□□□ -0.29
CCDC60-205ENST00000546345 VASPP50552 380 aaPredicted RBP13.25□□□□□ -0.29
CCDC60-205ENST00000546345 CHRDL2Q6WN34 429 aa13.21□□□□□ -0.29
CCDC60-205ENST00000546345 MIER1Q8N108 512 aa13.21□□□□□ -0.29
CCDC60-205ENST00000546345 PLCD3Q8N3E9 789 aa13.19□□□□□ -0.3
CCDC60-205ENST00000546345 IFT140Q96RY7 1462 aa13.16□□□□□ -0.3
CCDC60-205ENST00000546345 PLEKHG5O94827 1062 aa13.16□□□□□ -0.3
CCDC60-205ENST00000546345 CYB5RLQ6IPT4 315 aa13.14□□□□□ -0.31
CCDC60-205ENST00000546345 TARBP1Q13395 1621 aaKnown RBP13.13□□□□□ -0.31
CCDC60-205ENST00000546345 RSF1Q96T23 1441 aaPredicted RBP13.13□□□□□ -0.31
CCDC60-205ENST00000546345 TOP2AP11388 1531 aaKnown RBP13.12□□□□□ -0.31
CCDC60-205ENST00000546345 TOPBP1Q92547 1522 aa13.1□□□□□ -0.31
CCDC60-205ENST00000546345 FXR2P51116 673 aaKnown RBP eCLIP13.1□□□□□ -0.31
CCDC60-205ENST00000546345 CLASP1Q7Z460 1538 aa13.09□□□□□ -0.31
CCDC60-205ENST00000546345 CREBZFQ9NS37 354 aa13.09□□□□□ -0.31
CCDC60-205ENST00000546345 IFNLR1Q8IU57 520 aaPredicted RBP13.08□□□□□ -0.32
CCDC60-205ENST00000546345 KLHL34Q8N239 644 aa13.07□□□□□ -0.32
CCDC60-205ENST00000546345 POTEHQ6S545 545 aa13.06□□□□□ -0.32
CCDC60-205ENST00000546345 PIP4P2Q8N4L2 257 aa13.05□□□□□ -0.32
CCDC60-205ENST00000546345 DNMBPQ6XZF7 1577 aa13.04□□□□□ -0.32
CCDC60-205ENST00000546345 PRKAR2AP13861 404 aaKnown RBP13.04□□□□□ -0.32
CCDC60-205ENST00000546345 CHADLQ6NUI6 762 aa13.04□□□□□ -0.32
CCDC60-205ENST00000546345 ZBTB47Q9UFB7 747 aaPredicted RBP13.04□□□□□ -0.32
CCDC60-205ENST00000546345 AQRO60306 1485 aaKnown RBP eCLIP12.99□□□□□ -0.33
CCDC60-205ENST00000546345 KIF13AQ9H1H9 1805 aa12.97□□□□□ -0.33
CCDC60-205ENST00000546345 SYNJ1O43426 1573 aa12.94□□□□□ -0.34
CCDC60-205ENST00000546345 MNX1P50219 401 aaPredicted RBP12.94□□□□□ -0.34
CCDC60-205ENST00000546345 SPOCK2Q92563 424 aa12.94□□□□□ -0.34
CCDC60-205ENST00000546345 POLA1P09884 1462 aaPredicted RBP12.93□□□□□ -0.34
CCDC60-205ENST00000546345 NPM1P06748 294 aaKnown RBP eCLIP12.93□□□□□ -0.34
CCDC60-205ENST00000546345 FARP1Q9Y4F1 1045 aaPredicted RBP12.93□□□□□ -0.34
CCDC60-205ENST00000546345 ABCC8Q09428 1581 aa12.93□□□□□ -0.34
CCDC60-205ENST00000546345 WDR97A6NE52 1622 aa12.92□□□□□ -0.34
CCDC60-205ENST00000546345 SNAPC4Q5SXM2 1469 aa12.91□□□□□ -0.34
CCDC60-205ENST00000546345 PBRM1Q86U86 1689 aa12.89□□□□□ -0.35
CCDC60-205ENST00000546345 CCDC88BA6NC98 1476 aa12.88□□□□□ -0.35
CCDC60-205ENST00000546345 RAD54L2Q9Y4B4 1467 aa12.86□□□□□ -0.35
CCDC60-205ENST00000546345 ERCC6L2Q5T890 1561 aa12.86□□□□□ -0.35
CCDC60-205ENST00000546345 GAPVD1Q14C86 1478 aa12.85□□□□□ -0.35
CCDC60-205ENST00000546345 MAGI1Q96QZ7 1491 aaPredicted RBP12.84□□□□□ -0.35
CCDC60-205ENST00000546345 NUBP1P53384 320 aa12.82□□□□□ -0.36
CCDC60-205ENST00000546345 AMER1Q5JTC6 1135 aaPredicted RBP12.81□□□□□ -0.36
CCDC60-205ENST00000546345 SYNJ2O15056 1496 aa12.79□□□□□ -0.36
CCDC60-205ENST00000546345 TDRD9Q8NDG6 1382 aaKnown RBP12.79□□□□□ -0.36
CCDC60-205ENST00000546345 FGD5Q6ZNL6 1462 aa12.78□□□□□ -0.36
CCDC60-205ENST00000546345 SHROOM2Q13796 1616 aa12.76□□□□□ -0.37
CCDC60-205ENST00000546345 ABCA5Q8WWZ7 1642 aa12.76□□□□□ -0.37
CCDC60-205ENST00000546345 DCAF8Q5TAQ9 597 aa12.75□□□□□ -0.37
CCDC60-205ENST00000546345 RASEFQ8IZ41 740 aa12.75□□□□□ -0.37
CCDC60-205ENST00000546345 RTN4Q9NQC3 1192 aaKnown RBP12.75□□□□□ -0.37
CCDC60-205ENST00000546345 GRIN2BQ13224 1484 aa12.74□□□□□ -0.37
CCDC60-205ENST00000546345 ILDR1Q86SU0 546 aaPredicted RBP12.74□□□□□ -0.37
CCDC60-205ENST00000546345 FAM212AQ96EL1 285 aa12.74□□□□□ -0.37
CCDC60-205ENST00000546345 CIZ1Q9ULV3 898 aaPredicted RBP12.74□□□□□ -0.37
CCDC60-205ENST00000546345 SOGA1O94964 1423 aa12.73□□□□□ -0.37
CCDC60-205ENST00000546345 GSE1Q14687 1217 aa12.73□□□□□ -0.37
CCDC60-205ENST00000546345 CEP170Q5SW79 1584 aa12.73□□□□□ -0.37
CCDC60-205ENST00000546345 CUX1P39880 1505 aa12.72□□□□□ -0.37
CCDC60-205ENST00000546345 TSPYL2Q9H2G4 693 aaPredicted RBP12.7□□□□□ -0.38
CCDC60-205ENST00000546345 PAK3O75914 559 aaPredicted RBP12.69□□□□□ -0.38
CCDC60-205ENST00000546345 ADAMTS12P58397 1594 aa12.68□□□□□ -0.38
CCDC60-205ENST00000546345 CD44P16070 742 aaKnown RBP12.67□□□□□ -0.38
CCDC60-205ENST00000546345 DIP2BQ9P265 1576 aa12.67□□□□□ -0.38
CCDC60-205ENST00000546345 HAX1O00165 279 aa12.66□□□□□ -0.38
CCDC60-205ENST00000546345 CHMP7Q8WUX9 453 aaPredicted RBP12.66□□□□□ -0.38
CCDC60-205ENST00000546345 C19orf67A6NJJ6 358 aa12.65□□□□□ -0.38
CCDC60-205ENST00000546345 PKD2Q13563 968 aa12.65□□□□□ -0.38
CCDC60-205ENST00000546345 KDM6BO15054 1643 aa12.64□□□□□ -0.39
CCDC60-205ENST00000546345 GRIN2AQ12879 1464 aa12.64□□□□□ -0.39
CCDC60-205ENST00000546345 TSPOAP1O95153 1857 aa12.63□□□□□ -0.39
CCDC60-205ENST00000546345 NUP160Q12769 1436 aa12.62□□□□□ -0.39
CCDC60-205ENST00000546345 KDM4FA0A1W2PPD8 638 aa12.61□□□□□ -0.39
CCDC60-205ENST00000546345 ZRANB1Q9UGI0 708 aa12.61□□□□□ -0.39
CCDC60-205ENST00000546345 MAPKBP1O60336 1514 aa12.59□□□□□ -0.39
CCDC60-205ENST00000546345 ABCA10Q8WWZ4 1543 aa12.59□□□□□ -0.39
CCDC60-205ENST00000546345 ECM2O94769 699 aaPredicted RBP12.59□□□□□ -0.39
CCDC60-205ENST00000546345 ADCY10Q96PN6 1610 aa12.58□□□□□ -0.4
CCDC60-205ENST00000546345 ABCC10Q5T3U5 1492 aa12.58□□□□□ -0.4
CCDC60-205ENST00000546345 CCDC61Q9Y6R9 512 aa12.57□□□□□ -0.4
CCDC60-205ENST00000546345 HECW2Q9P2P5 1572 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms