RNA–Protein interactions for RNA: ENST00000546345.5

CCDC60-205, Transcript of coiled-coil domain containing 60, humanhuman

TSL 1 (best)

Gene CCDC60, Length 865 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60-205ENST00000546345 AEBP2Q6ZN18 517 aaPredicted RBP24.43■■□□□ 1.5
CCDC60-205ENST00000546345 CHIC1Q5VXU3 224 aa23.94■■□□□ 1.42
CCDC60-205ENST00000546345 PHF23Q9BUL5 403 aaPredicted RBP21.04■□□□□ 0.96
CCDC60-205ENST00000546345 SENP3Q9H4L4 574 aaPredicted RBP20.77■□□□□ 0.92
CCDC60-205ENST00000546345 PLPPR3Q6T4P5 718 aa19.49■□□□□ 0.71
CCDC60-205ENST00000546345 FOXD1Q16676 465 aa19.25■□□□□ 0.67
CCDC60-205ENST00000546345 PPP6R1Q9UPN7 881 aa18.56■□□□□ 0.56
CCDC60-205ENST00000546345 ADRA2BP18089 450 aa18.55■□□□□ 0.56
CCDC60-205ENST00000546345 PIAS4Q8N2W9 510 aaPredicted RBP18.18■□□□□ 0.5
CCDC60-205ENST00000546345 MSH5O43196 834 aa17.76■□□□□ 0.43
CCDC60-205ENST00000546345 NISCHQ9Y2I1 1504 aa17.48■□□□□ 0.39
CCDC60-205ENST00000546345 PPP4R3CPQ6ZMV5 832 aa17.18■□□□□ 0.34
CCDC60-205ENST00000546345 SCAF1Q9H7N4 1312 aaKnown RBP17.04■□□□□ 0.32
CCDC60-205ENST00000546345 MAPK8IP2Q13387 824 aaPredicted RBP16.82■□□□□ 0.28
CCDC60-205ENST00000546345 KCNA4P22459 653 aa16.81■□□□□ 0.28
CCDC60-205ENST00000546345 NCBP3Q53F19 620 aaKnown RBP16.77■□□□□ 0.28
CCDC60-205ENST00000546345 POTEDQ86YR6 584 aa16.72■□□□□ 0.27
CCDC60-205ENST00000546345 CNKSR2Q8WXI2 1034 aa16.69■□□□□ 0.26
CCDC60-205ENST00000546345 DMRT2Q9Y5R5 561 aa16.57■□□□□ 0.24
CCDC60-205ENST00000546345 NPM3O75607 178 aaKnown RBP16.47■□□□□ 0.23
CCDC60-205ENST00000546345 ABCC9O60706 1549 aa16.4■□□□□ 0.22
CCDC60-205ENST00000546345 RNF216Q9NWF9 866 aaPredicted RBP16.34■□□□□ 0.21
CCDC60-205ENST00000546345 HOXD11P31277 338 aaPredicted RBP16.25■□□□□ 0.19
CCDC60-205ENST00000546345 CCDC180Q9P1Z9 1646 aa16.08■□□□□ 0.16
CCDC60-205ENST00000546345 SLC4A1APQ9BWU0 796 aaKnown RBP16.04■□□□□ 0.16
CCDC60-205ENST00000546345 DNAJC5BQ9UF47 199 aa15.98■□□□□ 0.15
CCDC60-205ENST00000546345 DCAF8L1A6NGE4 600 aa15.89■□□□□ 0.13
CCDC60-205ENST00000546345 EHMT2Q96KQ7 1210 aa15.63■□□□□ 0.09
CCDC60-205ENST00000546345 SLC4A2P04920 1241 aa15.53■□□□□ 0.08
CCDC60-205ENST00000546345 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.52■□□□□ 0.08
CCDC60-205ENST00000546345 FOXD4L1Q9NU39 408 aa15.47■□□□□ 0.07
CCDC60-205ENST00000546345 ZBTB22O15209 634 aa15.44■□□□□ 0.06
CCDC60-205ENST00000546345 CSRNP3Q8WYN3 585 aa15.43■□□□□ 0.06
CCDC60-205ENST00000546345 RB1CC1Q8TDY2 1594 aa15.42■□□□□ 0.06
CCDC60-205ENST00000546345 UNC13AQ9UPW8 1703 aa15.37■□□□□ 0.05
CCDC60-205ENST00000546345 MYCNP04198 464 aaPredicted RBP15.24■□□□□ 0.03
CCDC60-205ENST00000546345 U3KPZ7 1027 aaPredicted RBP15.23■□□□□ 0.03
CCDC60-205ENST00000546345 RNF39Q9H2S5 420 aa15.19■□□□□ 0.02
CCDC60-205ENST00000546345 NACADO15069 1562 aa15.18■□□□□ 0.02
CCDC60-205ENST00000546345 BICRAQ9NZM4 1560 aa15.12■□□□□ 0.01
CCDC60-205ENST00000546345 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.11■□□□□ 0.01
CCDC60-205ENST00000546345 HNRNPUL2Q1KMD3 747 aaKnown RBP15.11■□□□□ 0.01
CCDC60-205ENST00000546345 C1QBPQ07021 282 aaKnown RBP15.05■□□□□ -0
CCDC60-205ENST00000546345 SAMD1Q6SPF0 538 aaPredicted RBP15.05■□□□□ -0
CCDC60-205ENST00000546345 PABPN1Q86U42 306 aaKnown RBP eCLIP15.05■□□□□ -0
CCDC60-205ENST00000546345 APLP2Q06481 763 aa14.95□□□□□ -0.02
CCDC60-205ENST00000546345 ATXN8OSP0DMR3 200 aa14.94□□□□□ -0.02
CCDC60-205ENST00000546345 CC2D2AQ9P2K1 1620 aa14.89□□□□□ -0.03
CCDC60-205ENST00000546345 DNAJC5Q9H3Z4 198 aa14.82□□□□□ -0.04
CCDC60-205ENST00000546345 CECR2Q9BXF3 1484 aa14.82□□□□□ -0.04
CCDC60-205ENST00000546345 MYO15BQ96JP2 1530 aa14.81□□□□□ -0.04
CCDC60-205ENST00000546345 CACNB1Q02641 598 aaPredicted RBP14.8□□□□□ -0.04
CCDC60-205ENST00000546345 SPINK5Q9NQ38 1064 aaPredicted RBP14.8□□□□□ -0.04
CCDC60-205ENST00000546345 ATF5Q9Y2D1 282 aaPredicted RBP14.8□□□□□ -0.04
CCDC60-205ENST00000546345 CAPN15O75808 1086 aa14.77□□□□□ -0.05
CCDC60-205ENST00000546345 SHROOM4Q9ULL8 1493 aa14.75□□□□□ -0.05
CCDC60-205ENST00000546345 EIF4G1Q04637 1599 aaKnown RBP14.72□□□□□ -0.05
CCDC60-205ENST00000546345 TRHP20396 242 aaPredicted RBP14.71□□□□□ -0.05
CCDC60-205ENST00000546345 ZNF219Q9P2Y4 722 aaPredicted RBP14.7□□□□□ -0.06
CCDC60-205ENST00000546345 DCAF8L2P0C7V8 631 aa14.63□□□□□ -0.07
CCDC60-205ENST00000546345 SCRIBQ14160 1630 aa14.55□□□□□ -0.08
CCDC60-205ENST00000546345 DSG3P32926 999 aa14.48□□□□□ -0.09
CCDC60-205ENST00000546345 POLA2Q14181 598 aa14.48□□□□□ -0.09
CCDC60-205ENST00000546345 ABCB7O75027 752 aa14.47□□□□□ -0.09
CCDC60-205ENST00000546345 ZCCHC6Q5VYS8 1495 aaKnown RBP14.44□□□□□ -0.1
CCDC60-205ENST00000546345 DCAF1Q9Y4B6 1507 aa14.43□□□□□ -0.1
CCDC60-205ENST00000546345 CUX2O14529 1486 aa14.36□□□□□ -0.11
CCDC60-205ENST00000546345 ZBTB12Q9Y330 459 aaPredicted RBP14.25□□□□□ -0.13
CCDC60-205ENST00000546345 FBLN2P98095 1184 aa14.23□□□□□ -0.13
CCDC60-205ENST00000546345 MKRN4PQ13434 485 aaPredicted RBP14.15□□□□□ -0.14
CCDC60-205ENST00000546345 ERCC6Q03468 1493 aa14.12□□□□□ -0.15
CCDC60-205ENST00000546345 THOC2Q8NI27 1593 aaKnown RBP14.1□□□□□ -0.15
CCDC60-205ENST00000546345 NESP48681 1621 aa14□□□□□ -0.17
CCDC60-205ENST00000546345 NCAPD3P42695 1498 aa13.96□□□□□ -0.17
CCDC60-205ENST00000546345 FKBP8Q14318 412 aa13.96□□□□□ -0.17
CCDC60-205ENST00000546345 KIF21AQ7Z4S6 1674 aa13.95□□□□□ -0.18
CCDC60-205ENST00000546345 OSCARQ8IYS5 282 aa13.95□□□□□ -0.18
CCDC60-205ENST00000546345 HMGXB3Q12766 1538 aa13.92□□□□□ -0.18
CCDC60-205ENST00000546345 SPDYE4A6NLX3 237 aa13.9□□□□□ -0.18
CCDC60-205ENST00000546345 TRIM41Q8WV44 630 aa13.89□□□□□ -0.19
CCDC60-205ENST00000546345 SMARCA2P51531 1590 aa13.88□□□□□ -0.19
CCDC60-205ENST00000546345 ATAD2BQ9ULI0 1458 aa13.87□□□□□ -0.19
CCDC60-205ENST00000546345 SPDYE2BA6NHP3 402 aa13.87□□□□□ -0.19
CCDC60-205ENST00000546345 SPDYE6P0CI01 402 aa13.87□□□□□ -0.19
CCDC60-205ENST00000546345 SPDYE2Q495Y8 402 aa13.87□□□□□ -0.19
CCDC60-205ENST00000546345 SMARCA4P51532 1647 aa13.84□□□□□ -0.19
CCDC60-205ENST00000546345 ZNF692Q9BU19 519 aaPredicted RBP13.84□□□□□ -0.19
CCDC60-205ENST00000546345 RBM42Q9BTD8 480 aaKnown RBP13.83□□□□□ -0.2
CCDC60-205ENST00000546345 LAMC3Q9Y6N6 1575 aa13.82□□□□□ -0.2
CCDC60-205ENST00000546345 BAZ1AQ9NRL2 1556 aaPredicted RBP13.77□□□□□ -0.21
CCDC60-205ENST00000546345 SSUH2Q9Y2M2 353 aa13.73□□□□□ -0.21
CCDC60-205ENST00000546345 PEG3Q9GZU2 1588 aa13.71□□□□□ -0.21
CCDC60-205ENST00000546345 BAZ1BQ9UIG0 1483 aaKnown RBP13.69□□□□□ -0.22
CCDC60-205ENST00000546345 WDR62O43379 1518 aa13.69□□□□□ -0.22
CCDC60-205ENST00000546345 AKT1S1Q96B36 256 aa13.67□□□□□ -0.22
CCDC60-205ENST00000546345 PROM2Q8N271 834 aa13.64□□□□□ -0.23
CCDC60-205ENST00000546345 MRC2Q9UBG0 1479 aa13.62□□□□□ -0.23
CCDC60-205ENST00000546345 RIMBP3CA6NJZ7 1639 aa13.61□□□□□ -0.23
CCDC60-205ENST00000546345 RIMBP3BA6NNM3 1639 aa13.61□□□□□ -0.23
CCDC60-205ENST00000546345 RIMBP3Q9UFD9 1639 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms