RNA–Protein interactions for RNA: ENST00000545209.1

SPPL3-209, Transcript of signal peptide peptidase like 3, humanhuman

TSL 1 (best)

Gene SPPL3, Length 797 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPPL3-209ENST00000545209 TRIM41Q8WV44 630 aa11.61□□□□□ -0.55
SPPL3-209ENST00000545209 HMGXB3Q12766 1538 aa11.6□□□□□ -0.55
SPPL3-209ENST00000545209 NCAPD3P42695 1498 aa11.6□□□□□ -0.55
SPPL3-209ENST00000545209 PRKAR2AP13861 404 aaKnown RBP11.53□□□□□ -0.56
SPPL3-209ENST00000545209 FBXO3Q9UK99 471 aa11.5□□□□□ -0.57
SPPL3-209ENST00000545209 CHADLQ6NUI6 762 aa11.49□□□□□ -0.57
SPPL3-209ENST00000545209 CC2D2AQ9P2K1 1620 aa11.46□□□□□ -0.57
SPPL3-209ENST00000545209 CREBZFQ9NS37 354 aa11.46□□□□□ -0.57
SPPL3-209ENST00000545209 ABCC8Q09428 1581 aa11.45□□□□□ -0.58
SPPL3-209ENST00000545209 WRNQ14191 1432 aaPredicted RBP eCLIP11.42□□□□□ -0.58
SPPL3-209ENST00000545209 MIER1Q8N108 512 aa11.4□□□□□ -0.58
SPPL3-209ENST00000545209 FARP1Q9Y4F1 1045 aaPredicted RBP11.39□□□□□ -0.59
SPPL3-209ENST00000545209 FAM9AQ8IZU1 332 aaPredicted RBP11.38□□□□□ -0.59
SPPL3-209ENST00000545209 LOC105371045A0A1W2PR82 267 aa11.37□□□□□ -0.59
SPPL3-209ENST00000545209 CFTRP13569 1480 aa11.37□□□□□ -0.59
SPPL3-209ENST00000545209 PLCD3Q8N3E9 789 aa11.36□□□□□ -0.59
SPPL3-209ENST00000545209 EEA1Q15075 1411 aa11.35□□□□□ -0.59
SPPL3-209ENST00000545209 PLEKHG5O94827 1062 aa11.35□□□□□ -0.59
SPPL3-209ENST00000545209 VASPP50552 380 aaPredicted RBP11.33□□□□□ -0.6
SPPL3-209ENST00000545209 CADPSQ9ULU8 1353 aa11.32□□□□□ -0.6
SPPL3-209ENST00000545209 MNX1P50219 401 aaPredicted RBP11.32□□□□□ -0.6
SPPL3-209ENST00000545209 SYNJ1O43426 1573 aa11.32□□□□□ -0.6
SPPL3-209ENST00000545209 HAX1O00165 279 aa11.31□□□□□ -0.6
SPPL3-209ENST00000545209 PRDM2Q13029 1718 aa11.3□□□□□ -0.6
SPPL3-209ENST00000545209 TOP2BQ02880 1626 aa11.29□□□□□ -0.6
SPPL3-209ENST00000545209 NPM1P06748 294 aaKnown RBP eCLIP11.28□□□□□ -0.6
SPPL3-209ENST00000545209 BIVM-ERCC5R4GMW8 1640 aa11.27□□□□□ -0.61
SPPL3-209ENST00000545209 SOGA1O94964 1423 aa11.26□□□□□ -0.61
SPPL3-209ENST00000545209 C19orf67A6NJJ6 358 aa11.25□□□□□ -0.61
SPPL3-209ENST00000545209 ZBTB47Q9UFB7 747 aaPredicted RBP11.25□□□□□ -0.61
SPPL3-209ENST00000545209 CUX1P39880 1505 aa11.22□□□□□ -0.61
SPPL3-209ENST00000545209 LAMC3Q9Y6N6 1575 aa11.2□□□□□ -0.62
SPPL3-209ENST00000545209 FANCD2Q9BXW9 1451 aa11.19□□□□□ -0.62
SPPL3-209ENST00000545209 CD44P16070 742 aaKnown RBP11.19□□□□□ -0.62
SPPL3-209ENST00000545209 EVX2Q03828 476 aa11.19□□□□□ -0.62
SPPL3-209ENST00000545209 RUSC2Q8N2Y8 1516 aa11.19□□□□□ -0.62
SPPL3-209ENST00000545209 KLHL34Q8N239 644 aa11.18□□□□□ -0.62
SPPL3-209ENST00000545209 GOLGA3Q08378 1498 aa11.18□□□□□ -0.62
SPPL3-209ENST00000545209 CEP164Q9UPV0 1460 aa11.17□□□□□ -0.62
SPPL3-209ENST00000545209 IFNLR1Q8IU57 520 aaPredicted RBP11.16□□□□□ -0.62
SPPL3-209ENST00000545209 KIF21BO75037 1637 aa11.15□□□□□ -0.62
SPPL3-209ENST00000545209 TNIKQ9UKE5 1360 aa11.15□□□□□ -0.63
SPPL3-209ENST00000545209 NESP48681 1621 aa11.14□□□□□ -0.63
SPPL3-209ENST00000545209 KIF27Q86VH2 1401 aa11.14□□□□□ -0.63
SPPL3-209ENST00000545209 PDS5BQ9NTI5 1447 aa11.14□□□□□ -0.63
SPPL3-209ENST00000545209 PAK3O75914 559 aaPredicted RBP11.12□□□□□ -0.63
SPPL3-209ENST00000545209 UBTFP17480 764 aaKnown RBP11.12□□□□□ -0.63
SPPL3-209ENST00000545209 NUBP1P53384 320 aa11.12□□□□□ -0.63
SPPL3-209ENST00000545209 DNMBPQ6XZF7 1577 aa11.11□□□□□ -0.63
SPPL3-209ENST00000545209 RASEFQ8IZ41 740 aa11.1□□□□□ -0.63
SPPL3-209ENST00000545209 SP7Q8TDD2 431 aaPredicted RBP11.1□□□□□ -0.63
SPPL3-209ENST00000545209 ZRANB1Q9UGI0 708 aa11.1□□□□□ -0.63
SPPL3-209ENST00000545209 FGD5Q6ZNL6 1462 aa11.1□□□□□ -0.63
SPPL3-209ENST00000545209 CEP162Q5TB80 1403 aa11.09□□□□□ -0.63
SPPL3-209ENST00000545209 TSPYL2Q9H2G4 693 aaPredicted RBP11.08□□□□□ -0.64
SPPL3-209ENST00000545209 TOPBP1Q92547 1522 aa11.08□□□□□ -0.64
SPPL3-209ENST00000545209 SPOCK2Q92563 424 aa11.07□□□□□ -0.64
SPPL3-209ENST00000545209 ERICH3Q5RHP9 1530 aa11.07□□□□□ -0.64
SPPL3-209ENST00000545209 CUX2O14529 1486 aa11.06□□□□□ -0.64
SPPL3-209ENST00000545209 PRXQ9BXM0 1461 aa11.05□□□□□ -0.64
SPPL3-209ENST00000545209 RAPGEF2Q9Y4G8 1499 aa11.05□□□□□ -0.64
SPPL3-209ENST00000545209 ZNF579Q8NAF0 562 aaKnown RBP11.04□□□□□ -0.64
SPPL3-209ENST00000545209 FAM212AQ96EL1 285 aa11.03□□□□□ -0.64
SPPL3-209ENST00000545209 POLA1P09884 1462 aaPredicted RBP11.02□□□□□ -0.65
SPPL3-209ENST00000545209 URB2Q14146 1524 aaKnown RBP11.02□□□□□ -0.65
SPPL3-209ENST00000545209 ABCA10Q8WWZ4 1543 aa11.01□□□□□ -0.65
SPPL3-209ENST00000545209 TRIM26Q12899 539 aaPredicted RBP11.01□□□□□ -0.65
SPPL3-209ENST00000545209 DCAF8Q5TAQ9 597 aa11□□□□□ -0.65
SPPL3-209ENST00000545209 PCGF6Q9BYE7 350 aa11□□□□□ -0.65
SPPL3-209ENST00000545209 CCDC61Q9Y6R9 512 aa11□□□□□ -0.65
SPPL3-209ENST00000545209 KIF21AQ7Z4S6 1674 aa11□□□□□ -0.65
SPPL3-209ENST00000545209 CLIP1P30622 1438 aa11□□□□□ -0.65
SPPL3-209ENST00000545209 CLCN6P51797 869 aa10.98□□□□□ -0.65
SPPL3-209ENST00000545209 PHF12Q96QT6 1004 aa10.98□□□□□ -0.65
SPPL3-209ENST00000545209 IGF1RP08069 1367 aa10.98□□□□□ -0.65
SPPL3-209ENST00000545209 MRC2Q9UBG0 1479 aa10.98□□□□□ -0.65
SPPL3-209ENST00000545209 GABBR2O75899 941 aa10.97□□□□□ -0.65
SPPL3-209ENST00000545209 RAD54L2Q9Y4B4 1467 aa10.97□□□□□ -0.65
SPPL3-209ENST00000545209 GSE1Q14687 1217 aa10.96□□□□□ -0.65
SPPL3-209ENST00000545209 CARMIL1Q5VZK9 1371 aa10.95□□□□□ -0.66
SPPL3-209ENST00000545209 WDR97A6NE52 1622 aa10.93□□□□□ -0.66
SPPL3-209ENST00000545209 CUL7Q14999 1698 aa10.92□□□□□ -0.66
SPPL3-209ENST00000545209 ERCC6Q03468 1493 aa10.92□□□□□ -0.66
SPPL3-209ENST00000545209 KIF12Q96FN5 646 aa10.91□□□□□ -0.66
SPPL3-209ENST00000545209 CIZ1Q9ULV3 898 aaPredicted RBP10.91□□□□□ -0.66
SPPL3-209ENST00000545209 VPS8Q8N3P4 1428 aa10.91□□□□□ -0.66
SPPL3-209ENST00000545209 ABCA5Q8WWZ7 1642 aa10.9□□□□□ -0.66
SPPL3-209ENST00000545209 WDR62O43379 1518 aa10.89□□□□□ -0.67
SPPL3-209ENST00000545209 GAPVD1Q14C86 1478 aa10.89□□□□□ -0.67
SPPL3-209ENST00000545209 TARBP1Q13395 1621 aaKnown RBP10.87□□□□□ -0.67
SPPL3-209ENST00000545209 MAP3K13O43283 966 aa10.87□□□□□ -0.67
SPPL3-209ENST00000545209 RANGAP1P46060 587 aaPredicted RBP10.87□□□□□ -0.67
SPPL3-209ENST00000545209 TDRD9Q8NDG6 1382 aaKnown RBP10.87□□□□□ -0.67
SPPL3-209ENST00000545209 GALR2O43603 387 aaPredicted RBP10.86□□□□□ -0.67
SPPL3-209ENST00000545209 PYGBP11216 843 aa10.86□□□□□ -0.67
SPPL3-209ENST00000545209 IFT140Q96RY7 1462 aa10.86□□□□□ -0.67
SPPL3-209ENST00000545209 MS4A3Q96HJ5 214 aa10.85□□□□□ -0.67
SPPL3-209ENST00000545209 SGIP1Q9BQI5 828 aa10.84□□□□□ -0.67
SPPL3-209ENST00000545209 ARAP1Q96P48 1450 aa10.84□□□□□ -0.67
SPPL3-209ENST00000545209 CHRM1P11229 460 aaPredicted RBP10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms