RNA–Protein interactions for RNA: ENST00000544800.1

CIT-215, Transcript of citron rho-interacting serine/threonine kinase, humanhuman

TSL 4

Gene CIT, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIT-215ENST00000544800 GRIN2BQ13224 1484 aa13.77□□□□□ -0.21
CIT-215ENST00000544800 RAD54L2Q9Y4B4 1467 aa13.77□□□□□ -0.21
CIT-215ENST00000544800 PRDM2Q13029 1718 aa13.76□□□□□ -0.21
CIT-215ENST00000544800 MAPKBP1O60336 1514 aa13.74□□□□□ -0.21
CIT-215ENST00000544800 CERKQ8TCT0 537 aa13.74□□□□□ -0.21
CIT-215ENST00000544800 WDR97A6NE52 1622 aa13.74□□□□□ -0.21
CIT-215ENST00000544800 SPATA31D1Q6ZQQ2 1576 aa13.72□□□□□ -0.21
CIT-215ENST00000544800 CEP170Q5SW79 1584 aa13.71□□□□□ -0.21
CIT-215ENST00000544800 TSPOAP1O95153 1857 aa13.68□□□□□ -0.22
CIT-215ENST00000544800 TOP2BQ02880 1626 aa13.67□□□□□ -0.22
CIT-215ENST00000544800 TOP2AP11388 1531 aaKnown RBP13.59□□□□□ -0.23
CIT-215ENST00000544800 NUP160Q12769 1436 aa13.58□□□□□ -0.24
CIT-215ENST00000544800 PRG4Q92954 1404 aaPredicted RBP13.58□□□□□ -0.24
CIT-215ENST00000544800 SHROOM2Q13796 1616 aa13.58□□□□□ -0.24
CIT-215ENST00000544800 COL17A1Q9UMD9 1497 aaPredicted RBP13.58□□□□□ -0.24
CIT-215ENST00000544800 GRIN2AQ12879 1464 aa13.55□□□□□ -0.24
CIT-215ENST00000544800 JPH4Q96JJ6 628 aa13.53□□□□□ -0.24
CIT-215ENST00000544800 FGD5Q6ZNL6 1462 aa13.52□□□□□ -0.25
CIT-215ENST00000544800 CCDC88BA6NC98 1476 aa13.5□□□□□ -0.25
CIT-215ENST00000544800 ADCY10Q96PN6 1610 aa13.49□□□□□ -0.25
CIT-215ENST00000544800 PCF11O94913 1555 aaKnown RBP13.47□□□□□ -0.25
CIT-215ENST00000544800 PBRM1Q86U86 1689 aa13.47□□□□□ -0.25
CIT-215ENST00000544800 PTPRMP28827 1452 aa13.46□□□□□ -0.25
CIT-215ENST00000544800 PPRC1Q5VV67 1664 aaKnown RBP13.46□□□□□ -0.26
CIT-215ENST00000544800 GLI2P10070 1586 aa13.43□□□□□ -0.26
CIT-215ENST00000544800 HSPA2P54652 639 aa13.41□□□□□ -0.26
CIT-215ENST00000544800 TEX14Q8IWB6 1497 aa13.41□□□□□ -0.26
CIT-215ENST00000544800 PLB1Q6P1J6 1458 aa13.39□□□□□ -0.27
CIT-215ENST00000544800 ASXL2Q76L83 1435 aa13.36□□□□□ -0.27
CIT-215ENST00000544800 FHAD1B1AJZ9 1412 aa13.35□□□□□ -0.27
CIT-215ENST00000544800 ABCA5Q8WWZ7 1642 aa13.33□□□□□ -0.28
CIT-215ENST00000544800 ABCA10Q8WWZ4 1543 aa13.33□□□□□ -0.28
CIT-215ENST00000544800 ADAMTS12P58397 1594 aa13.32□□□□□ -0.28
CIT-215ENST00000544800 CUX1P39880 1505 aa13.3□□□□□ -0.28
CIT-215ENST00000544800 ADAMTSL3P82987 1691 aa13.28□□□□□ -0.28
CIT-215ENST00000544800 DMRT2Q9Y5R5 561 aa13.28□□□□□ -0.28
CIT-215ENST00000544800 ABCC2Q92887 1545 aa13.28□□□□□ -0.28
CIT-215ENST00000544800 KIF21BO75037 1637 aa13.26□□□□□ -0.29
CIT-215ENST00000544800 EPRSP07814 1512 aaKnown RBP13.26□□□□□ -0.29
CIT-215ENST00000544800 MAP3K4Q9Y6R4 1608 aa13.25□□□□□ -0.29
CIT-215ENST00000544800 KIAA0586Q9BVV6 1533 aa13.25□□□□□ -0.29
CIT-215ENST00000544800 PTPRGP23470 1445 aa13.23□□□□□ -0.29
CIT-215ENST00000544800 MAPK8IP2Q13387 824 aaPredicted RBP13.21□□□□□ -0.29
CIT-215ENST00000544800 YEATS2Q9ULM3 1422 aa13.17□□□□□ -0.3
CIT-215ENST00000544800 IQSEC2Q5JU85 1478 aa13.16□□□□□ -0.3
CIT-215ENST00000544800 ARID4BQ4LE39 1312 aaPredicted RBP13.16□□□□□ -0.3
CIT-215ENST00000544800 TTBK1Q5TCY1 1321 aaPredicted RBP13.15□□□□□ -0.3
CIT-215ENST00000544800 RUSC2Q8N2Y8 1516 aa13.15□□□□□ -0.3
CIT-215ENST00000544800 MADDQ8WXG6 1647 aa13.13□□□□□ -0.31
CIT-215ENST00000544800 ERICH3Q5RHP9 1530 aa13.13□□□□□ -0.31
CIT-215ENST00000544800 MAGI3Q5TCQ9 1506 aa13.13□□□□□ -0.31
CIT-215ENST00000544800 UHRF1BP1LA0JNW5 1464 aa13.12□□□□□ -0.31
CIT-215ENST00000544800 CD109Q6YHK3 1445 aa13.12□□□□□ -0.31
CIT-215ENST00000544800 MED1Q15648 1581 aaPredicted RBP13.11□□□□□ -0.31
CIT-215ENST00000544800 BCORL1Q5H9F3 1711 aa13.11□□□□□ -0.31
CIT-215ENST00000544800 UBAP1LF5GYI3 381 aa13.1□□□□□ -0.31
CIT-215ENST00000544800 TNIKQ9UKE5 1360 aa13.09□□□□□ -0.31
CIT-215ENST00000544800 WRNQ14191 1432 aaPredicted RBP eCLIP13.09□□□□□ -0.31
CIT-215ENST00000544800 CUL7Q14999 1698 aa13.08□□□□□ -0.32
CIT-215ENST00000544800 ARAP3Q8WWN8 1544 aa13.07□□□□□ -0.32
CIT-215ENST00000544800 UACAQ9BZF9 1416 aa13.06□□□□□ -0.32
CIT-215ENST00000544800 KDM5BQ9UGL1 1544 aa13.06□□□□□ -0.32
CIT-215ENST00000544800 PTPRTO14522 1441 aa13.05□□□□□ -0.32
CIT-215ENST00000544800 LTBP4Q8N2S1 1624 aa13.05□□□□□ -0.32
CIT-215ENST00000544800 RIMS1Q86UR5 1692 aaKnown RBP13.04□□□□□ -0.32
CIT-215ENST00000544800 CARMIL2Q6F5E8 1435 aa13.03□□□□□ -0.32
CIT-215ENST00000544800 HSPA1LP34931 641 aa13.01□□□□□ -0.33
CIT-215ENST00000544800 WDR7Q9Y4E6 1490 aa13.01□□□□□ -0.33
CIT-215ENST00000544800 STRCQ7RTU9 1775 aa12.99□□□□□ -0.33
CIT-215ENST00000544800 PHLDB1Q86UU1 1377 aa12.99□□□□□ -0.33
CIT-215ENST00000544800 SCAF1Q9H7N4 1312 aaKnown RBP12.99□□□□□ -0.33
CIT-215ENST00000544800 RAPGEF3O95398 923 aa12.99□□□□□ -0.33
CIT-215ENST00000544800 KCNH8Q96L42 1107 aa12.99□□□□□ -0.33
CIT-215ENST00000544800 CFAP43Q8NDM7 1665 aa12.96□□□□□ -0.33
CIT-215ENST00000544800 POGZQ7Z3K3 1410 aa12.96□□□□□ -0.34
CIT-215ENST00000544800 ZCCHC11Q5TAX3 1644 aaKnown RBP12.93□□□□□ -0.34
CIT-215ENST00000544800 PREX1Q8TCU6 1659 aa12.89□□□□□ -0.35
CIT-215ENST00000544800 UHRF1BP1Q6BDS2 1440 aa12.88□□□□□ -0.35
CIT-215ENST00000544800 RGS17Q9UGC6 210 aaPredicted RBP12.88□□□□□ -0.35
CIT-215ENST00000544800 PIP4K2BP78356 416 aa12.87□□□□□ -0.35
CIT-215ENST00000544800 FANCAO15360 1455 aa12.85□□□□□ -0.35
CIT-215ENST00000544800 SRCAPQ6ZRS2 3230 aa12.85□□□□□ -0.35
CIT-215ENST00000544800 TOM1O60784 492 aa12.85□□□□□ -0.35
CIT-215ENST00000544800 CEBPAP49715 358 aaPredicted RBP12.85□□□□□ -0.35
CIT-215ENST00000544800 MLECQ14165 292 aa12.85□□□□□ -0.35
CIT-215ENST00000544800 TTC37Q6PGP7 1564 aa12.84□□□□□ -0.35
CIT-215ENST00000544800 ZNF335Q9H4Z2 1342 aaPredicted RBP12.83□□□□□ -0.36
CIT-215ENST00000544800 AKNAQ7Z591 1439 aa12.8□□□□□ -0.36
CIT-215ENST00000544800 NEO1Q92859 1461 aa12.8□□□□□ -0.36
CIT-215ENST00000544800 SETD1BQ9UPS6 1966 aaKnown RBP12.8□□□□□ -0.36
CIT-215ENST00000544800 ARHGEF40Q8TER5 1519 aa12.79□□□□□ -0.36
CIT-215ENST00000544800 PPP4R3CPQ6ZMV5 832 aa12.78□□□□□ -0.36
CIT-215ENST00000544800 DISP1Q96F81 1524 aa12.78□□□□□ -0.36
CIT-215ENST00000544800 NCOA1Q15788 1441 aa12.77□□□□□ -0.37
CIT-215ENST00000544800 FRMPD1Q5SYB0 1578 aa12.77□□□□□ -0.37
CIT-215ENST00000544800 POTEAQ6S8J7 498 aa12.76□□□□□ -0.37
CIT-215ENST00000544800 FER1L4A9Z1Z3 1794 aa12.75□□□□□ -0.37
CIT-215ENST00000544800 IGF1RP08069 1367 aa12.75□□□□□ -0.37
CIT-215ENST00000544800 BIVM-ERCC5R4GMW8 1640 aa12.72□□□□□ -0.37
CIT-215ENST00000544800 UPF1Q92900 1129 aaKnown RBP eCLIP12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms