RNA–Protein interactions for RNA: ENST00000543660.1

NPIPB4-219, Transcript of nuclear pore complex interacting protein family member B4, humanhuman

TSL 5

Gene NPIPB4, Length 353 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB4-219ENST00000543660 TOPBP1Q92547 1522 aa9.41□□□□□ -0.9
NPIPB4-219ENST00000543660 ILDR1Q86SU0 546 aaPredicted RBP9.4□□□□□ -0.9
NPIPB4-219ENST00000543660 AQRO60306 1485 aaKnown RBP eCLIP9.4□□□□□ -0.91
NPIPB4-219ENST00000543660 CHD1O14646 1710 aa9.39□□□□□ -0.91
NPIPB4-219ENST00000543660 FBLN2P98095 1184 aa9.39□□□□□ -0.91
NPIPB4-219ENST00000543660 SP7Q8TDD2 431 aaPredicted RBP9.39□□□□□ -0.91
NPIPB4-219ENST00000543660 TOP2AP11388 1531 aaKnown RBP9.38□□□□□ -0.91
NPIPB4-219ENST00000543660 PRDM2Q13029 1718 aa9.35□□□□□ -0.91
NPIPB4-219ENST00000543660 TARBP1Q13395 1621 aaKnown RBP9.34□□□□□ -0.91
NPIPB4-219ENST00000543660 ABCC8Q09428 1581 aa9.34□□□□□ -0.91
NPIPB4-219ENST00000543660 CLASP1Q7Z460 1538 aa9.32□□□□□ -0.92
NPIPB4-219ENST00000543660 REM2Q8IYK8 340 aaPredicted RBP9.31□□□□□ -0.92
NPIPB4-219ENST00000543660 DNMBPQ6XZF7 1577 aa9.31□□□□□ -0.92
NPIPB4-219ENST00000543660 CCDC88BA6NC98 1476 aa9.3□□□□□ -0.92
NPIPB4-219ENST00000543660 EHMT2Q96KQ7 1210 aa9.3□□□□□ -0.92
NPIPB4-219ENST00000543660 FOXD4L1Q9NU39 408 aa9.3□□□□□ -0.92
NPIPB4-219ENST00000543660 POLA1P09884 1462 aaPredicted RBP9.29□□□□□ -0.92
NPIPB4-219ENST00000543660 ATF5Q9Y2D1 282 aaPredicted RBP9.29□□□□□ -0.92
NPIPB4-219ENST00000543660 TDRD9Q8NDG6 1382 aaKnown RBP9.28□□□□□ -0.92
NPIPB4-219ENST00000543660 PIP4P2Q8N4L2 257 aa9.28□□□□□ -0.92
NPIPB4-219ENST00000543660 CHMP7Q8WUX9 453 aaPredicted RBP9.27□□□□□ -0.93
NPIPB4-219ENST00000543660 RAD54L2Q9Y4B4 1467 aa9.27□□□□□ -0.93
NPIPB4-219ENST00000543660 SNAPC4Q5SXM2 1469 aa9.26□□□□□ -0.93
NPIPB4-219ENST00000543660 SYNJ1O43426 1573 aa9.25□□□□□ -0.93
NPIPB4-219ENST00000543660 GAPVD1Q14C86 1478 aa9.25□□□□□ -0.93
NPIPB4-219ENST00000543660 SOGA1O94964 1423 aa9.24□□□□□ -0.93
NPIPB4-219ENST00000543660 SLC4A1APQ9BWU0 796 aaKnown RBP9.24□□□□□ -0.93
NPIPB4-219ENST00000543660 MAGI1Q96QZ7 1491 aaPredicted RBP9.22□□□□□ -0.93
NPIPB4-219ENST00000543660 FXR2P51116 673 aaKnown RBP eCLIP9.21□□□□□ -0.94
NPIPB4-219ENST00000543660 SYNJ2O15056 1496 aa9.21□□□□□ -0.94
NPIPB4-219ENST00000543660 HAX1O00165 279 aa9.2□□□□□ -0.94
NPIPB4-219ENST00000543660 PITPNM1O00562 1244 aa9.2□□□□□ -0.94
NPIPB4-219ENST00000543660 GRIN2BQ13224 1484 aa9.19□□□□□ -0.94
NPIPB4-219ENST00000543660 WDR97A6NE52 1622 aa9.19□□□□□ -0.94
NPIPB4-219ENST00000543660 SLC24A1O60721 1099 aa9.18□□□□□ -0.94
NPIPB4-219ENST00000543660 FGD5Q6ZNL6 1462 aa9.17□□□□□ -0.94
NPIPB4-219ENST00000543660 ERCC6L2Q5T890 1561 aa9.16□□□□□ -0.94
NPIPB4-219ENST00000543660 KDM4FA0A1W2PPD8 638 aa9.15□□□□□ -0.94
NPIPB4-219ENST00000543660 KIF13AQ9H1H9 1805 aa9.12□□□□□ -0.95
NPIPB4-219ENST00000543660 CUX1P39880 1505 aa9.1□□□□□ -0.95
NPIPB4-219ENST00000543660 ATXN8OSP0DMR3 200 aa9.1□□□□□ -0.95
NPIPB4-219ENST00000543660 CEP170Q5SW79 1584 aa9.09□□□□□ -0.95
NPIPB4-219ENST00000543660 PBRM1Q86U86 1689 aa9.08□□□□□ -0.96
NPIPB4-219ENST00000543660 SPDYE2BA6NHP3 402 aa9.08□□□□□ -0.96
NPIPB4-219ENST00000543660 SPDYE6P0CI01 402 aa9.08□□□□□ -0.96
NPIPB4-219ENST00000543660 SPDYE2Q495Y8 402 aa9.08□□□□□ -0.96
NPIPB4-219ENST00000543660 GRIN2AQ12879 1464 aa9.08□□□□□ -0.96
NPIPB4-219ENST00000543660 NUP160Q12769 1436 aa9.07□□□□□ -0.96
NPIPB4-219ENST00000543660 FAM69CQ0P6D2 419 aa9.07□□□□□ -0.96
NPIPB4-219ENST00000543660 ABCC10Q5T3U5 1492 aa9.06□□□□□ -0.96
NPIPB4-219ENST00000543660 ABCA10Q8WWZ4 1543 aa9.05□□□□□ -0.96
NPIPB4-219ENST00000543660 SHROOM2Q13796 1616 aa9.05□□□□□ -0.96
NPIPB4-219ENST00000543660 ABCA5Q8WWZ7 1642 aa9.05□□□□□ -0.96
NPIPB4-219ENST00000543660 EVX2Q03828 476 aa9.01□□□□□ -0.97
NPIPB4-219ENST00000543660 PRG4Q92954 1404 aaPredicted RBP9.01□□□□□ -0.97
NPIPB4-219ENST00000543660 ADAMTS12P58397 1594 aa9□□□□□ -0.97
NPIPB4-219ENST00000543660 DIP2BQ9P265 1576 aa9□□□□□ -0.97
NPIPB4-219ENST00000543660 ZBTB22O15209 634 aa9□□□□□ -0.97
NPIPB4-219ENST00000543660 KDM6BO15054 1643 aa9□□□□□ -0.97
NPIPB4-219ENST00000543660 MAPKBP1O60336 1514 aa9□□□□□ -0.97
NPIPB4-219ENST00000543660 SPDYE1Q8NFV5 336 aaPredicted RBP8.99□□□□□ -0.97
NPIPB4-219ENST00000543660 JPH4Q96JJ6 628 aa8.99□□□□□ -0.97
NPIPB4-219ENST00000543660 FHAD1B1AJZ9 1412 aa8.98□□□□□ -0.97
NPIPB4-219ENST00000543660 NPM1P06748 294 aaKnown RBP eCLIP8.98□□□□□ -0.97
NPIPB4-219ENST00000543660 PRKAR2AP13861 404 aaKnown RBP8.97□□□□□ -0.97
NPIPB4-219ENST00000543660 HECW2Q9P2P5 1572 aa8.95□□□□□ -0.98
NPIPB4-219ENST00000543660 WRNQ14191 1432 aaPredicted RBP eCLIP8.95□□□□□ -0.98
NPIPB4-219ENST00000543660 ADGRL1O94910 1474 aa8.94□□□□□ -0.98
NPIPB4-219ENST00000543660 ADCY10Q96PN6 1610 aa8.94□□□□□ -0.98
NPIPB4-219ENST00000543660 CLEC11AQ9Y240 323 aa8.93□□□□□ -0.98
NPIPB4-219ENST00000543660 TSPOAP1O95153 1857 aa8.93□□□□□ -0.98
NPIPB4-219ENST00000543660 ERICH3Q5RHP9 1530 aa8.92□□□□□ -0.98
NPIPB4-219ENST00000543660 C19orf67A6NJJ6 358 aa8.92□□□□□ -0.98
NPIPB4-219ENST00000543660 FBXO41Q8TF61 875 aa8.92□□□□□ -0.98
NPIPB4-219ENST00000543660 SSUH2Q9Y2M2 353 aa8.91□□□□□ -0.98
NPIPB4-219ENST00000543660 LMTK3Q96Q04 1460 aa8.89□□□□□ -0.99
NPIPB4-219ENST00000543660 ZNF692Q9BU19 519 aaPredicted RBP8.89□□□□□ -0.99
NPIPB4-219ENST00000543660 RUSC2Q8N2Y8 1516 aa8.89□□□□□ -0.99
NPIPB4-219ENST00000543660 COL17A1Q9UMD9 1497 aaPredicted RBP8.88□□□□□ -0.99
NPIPB4-219ENST00000543660 MKRN4PQ13434 485 aaPredicted RBP8.86□□□□□ -0.99
NPIPB4-219ENST00000543660 PPRC1Q5VV67 1664 aaKnown RBP8.85□□□□□ -0.99
NPIPB4-219ENST00000543660 TOP2BQ02880 1626 aa8.85□□□□□ -0.99
NPIPB4-219ENST00000543660 SOCS7O14512 581 aa8.84□□□□□ -0.99
NPIPB4-219ENST00000543660 GABBR2O75899 941 aa8.84□□□□□ -0.99
NPIPB4-219ENST00000543660 BIVM-ERCC5R4GMW8 1640 aa8.83□□□□□ -1
NPIPB4-219ENST00000543660 GLI2P10070 1586 aa8.83□□□□□ -1
NPIPB4-219ENST00000543660 ASXL2Q76L83 1435 aa8.83□□□□□ -1
NPIPB4-219ENST00000543660 KIAA0586Q9BVV6 1533 aa8.83□□□□□ -1
NPIPB4-219ENST00000543660 PTPRGP23470 1445 aa8.82□□□□□ -1
NPIPB4-219ENST00000543660 ABCC2Q92887 1545 aa8.82□□□□□ -1
NPIPB4-219ENST00000543660 PLB1Q6P1J6 1458 aa8.82□□□□□ -1
NPIPB4-219ENST00000543660 LHX8Q68G74 356 aa8.8□□□□□ -1
NPIPB4-219ENST00000543660 ILDR2Q71H61 639 aa8.8□□□□□ -1
NPIPB4-219ENST00000543660 PRR29P0C7W0 189 aa8.78□□□□□ -1
NPIPB4-219ENST00000543660 EPRSP07814 1512 aaKnown RBP8.78□□□□□ -1
NPIPB4-219ENST00000543660 TTBK1Q5TCY1 1321 aaPredicted RBP8.78□□□□□ -1
NPIPB4-219ENST00000543660 TNIKQ9UKE5 1360 aa8.77□□□□□ -1.01
NPIPB4-219ENST00000543660 UHRF1BP1LA0JNW5 1464 aa8.77□□□□□ -1.01
NPIPB4-219ENST00000543660 IGF1RP08069 1367 aa8.76□□□□□ -1.01
NPIPB4-219ENST00000543660 CHADLQ6NUI6 762 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms