RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 ACIN1Q9UKV3 1341 aaKnown RBP12.14□□□□□ -0.47
PDLIM5-221ENST00000542407 ABCA5Q8WWZ7 1642 aa12.13□□□□□ -0.47
PDLIM5-221ENST00000542407 NEUROD1Q13562 356 aa12.12□□□□□ -0.47
PDLIM5-221ENST00000542407 TARBP1Q13395 1621 aaKnown RBP12.12□□□□□ -0.47
PDLIM5-221ENST00000542407 GTF3C3Q9Y5Q9 886 aa12.11□□□□□ -0.47
PDLIM5-221ENST00000542407 VPS8Q8N3P4 1428 aa12.11□□□□□ -0.47
PDLIM5-221ENST00000542407 CARMIL1Q5VZK9 1371 aa12.1□□□□□ -0.47
PDLIM5-221ENST00000542407 MRC2Q9UBG0 1479 aa12.1□□□□□ -0.47
PDLIM5-221ENST00000542407 ARAP1Q96P48 1450 aa12.1□□□□□ -0.47
PDLIM5-221ENST00000542407 CUL7Q14999 1698 aa12.09□□□□□ -0.47
PDLIM5-221ENST00000542407 CENPBP07199 599 aaPredicted RBP12.07□□□□□ -0.48
PDLIM5-221ENST00000542407 WDR62O43379 1518 aa12.07□□□□□ -0.48
PDLIM5-221ENST00000542407 PLEKHG5O94827 1062 aa12.06□□□□□ -0.48
PDLIM5-221ENST00000542407 ARHGAP35Q9NRY4 1499 aa12.05□□□□□ -0.48
PDLIM5-221ENST00000542407 GAPVD1Q14C86 1478 aa12.03□□□□□ -0.48
PDLIM5-221ENST00000542407 TDRD9Q8NDG6 1382 aaKnown RBP12.03□□□□□ -0.48
PDLIM5-221ENST00000542407 THOC2Q8NI27 1593 aaKnown RBP12.02□□□□□ -0.49
PDLIM5-221ENST00000542407 PBRM1Q86U86 1689 aa12□□□□□ -0.49
PDLIM5-221ENST00000542407 ZBTB22O15209 634 aa12□□□□□ -0.49
PDLIM5-221ENST00000542407 CTTNBP2Q8WZ74 1663 aa12□□□□□ -0.49
PDLIM5-221ENST00000542407 RANGAP1P46060 587 aaPredicted RBP11.99□□□□□ -0.49
PDLIM5-221ENST00000542407 IFT140Q96RY7 1462 aa11.97□□□□□ -0.49
PDLIM5-221ENST00000542407 NCBP3Q53F19 620 aaKnown RBP11.97□□□□□ -0.49
PDLIM5-221ENST00000542407 ADAMTS12P58397 1594 aa11.95□□□□□ -0.5
PDLIM5-221ENST00000542407 AQRO60306 1485 aaKnown RBP eCLIP11.94□□□□□ -0.5
PDLIM5-221ENST00000542407 ERCC6Q03468 1493 aa11.94□□□□□ -0.5
PDLIM5-221ENST00000542407 ZNF608Q9ULD9 1512 aaPredicted RBP11.94□□□□□ -0.5
PDLIM5-221ENST00000542407 EFCAB5A4FU69 1503 aa11.93□□□□□ -0.5
PDLIM5-221ENST00000542407 GRIN2BQ13224 1484 aa11.91□□□□□ -0.5
PDLIM5-221ENST00000542407 EIF4G3O43432 1585 aaKnown RBP11.91□□□□□ -0.5
PDLIM5-221ENST00000542407 FHAD1B1AJZ9 1412 aa11.91□□□□□ -0.5
PDLIM5-221ENST00000542407 SAMD9Q5K651 1589 aa11.9□□□□□ -0.5
PDLIM5-221ENST00000542407 MAP3K1Q13233 1512 aa11.88□□□□□ -0.51
PDLIM5-221ENST00000542407 PCF11O94913 1555 aaKnown RBP11.88□□□□□ -0.51
PDLIM5-221ENST00000542407 TIAM1Q13009 1591 aa11.86□□□□□ -0.51
PDLIM5-221ENST00000542407 FHOD3Q2V2M9 1422 aa11.86□□□□□ -0.51
PDLIM5-221ENST00000542407 KANK4Q5T7N3 995 aaPredicted RBP11.85□□□□□ -0.51
PDLIM5-221ENST00000542407 DIEXFQ68CQ4 756 aaKnown RBP11.85□□□□□ -0.51
PDLIM5-221ENST00000542407 CFAP43Q8NDM7 1665 aa11.85□□□□□ -0.51
PDLIM5-221ENST00000542407 UBE2Q2Q8WVN8 375 aa11.85□□□□□ -0.51
PDLIM5-221ENST00000542407 SNAPC4Q5SXM2 1469 aa11.84□□□□□ -0.51
PDLIM5-221ENST00000542407 FYCO1Q9BQS8 1478 aa11.83□□□□□ -0.52
PDLIM5-221ENST00000542407 IQGAP2Q13576 1575 aa11.82□□□□□ -0.52
PDLIM5-221ENST00000542407 YTHDC1Q96MU7 727 aaKnown RBP11.82□□□□□ -0.52
PDLIM5-221ENST00000542407 CASKIN1Q8WXD9 1431 aa11.81□□□□□ -0.52
PDLIM5-221ENST00000542407 PODXL2Q9NZ53 605 aa11.81□□□□□ -0.52
PDLIM5-221ENST00000542407 MAGI1Q96QZ7 1491 aaPredicted RBP11.8□□□□□ -0.52
PDLIM5-221ENST00000542407 PPP6R1Q9UPN7 881 aa11.8□□□□□ -0.52
PDLIM5-221ENST00000542407 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.8□□□□□ -0.52
PDLIM5-221ENST00000542407 ANP32EQ9BTT0 268 aa11.8□□□□□ -0.52
PDLIM5-221ENST00000542407 RRBP1Q9P2E9 1410 aaKnown RBP11.8□□□□□ -0.52
PDLIM5-221ENST00000542407 P3H3Q8IVL6 736 aa11.79□□□□□ -0.52
PDLIM5-221ENST00000542407 GRIN2AQ12879 1464 aa11.79□□□□□ -0.52
PDLIM5-221ENST00000542407 LRRC9Q6ZRR7 1453 aa11.79□□□□□ -0.52
PDLIM5-221ENST00000542407 FMN1Q68DA7 1419 aa11.79□□□□□ -0.52
PDLIM5-221ENST00000542407 CCER1Q8TC90 406 aaPredicted RBP11.79□□□□□ -0.52
PDLIM5-221ENST00000542407 LRRIQ1Q96JM4 1722 aa11.78□□□□□ -0.52
PDLIM5-221ENST00000542407 UGGT2Q9NYU1 1516 aa11.78□□□□□ -0.52
PDLIM5-221ENST00000542407 SYNJ2O15056 1496 aa11.76□□□□□ -0.53
PDLIM5-221ENST00000542407 KIAA0586Q9BVV6 1533 aa11.76□□□□□ -0.53
PDLIM5-221ENST00000542407 CEP170Q5SW79 1584 aa11.75□□□□□ -0.53
PDLIM5-221ENST00000542407 DISP1Q96F81 1524 aa11.73□□□□□ -0.53
PDLIM5-221ENST00000542407 ANO8Q9HCE9 1232 aaPredicted RBP11.73□□□□□ -0.53
PDLIM5-221ENST00000542407 KIAA0556O60303 1618 aa11.72□□□□□ -0.53
PDLIM5-221ENST00000542407 NUP160Q12769 1436 aa11.71□□□□□ -0.53
PDLIM5-221ENST00000542407 PHLDB1Q86UU1 1377 aa11.7□□□□□ -0.54
PDLIM5-221ENST00000542407 CCNB3Q8WWL7 1395 aa11.7□□□□□ -0.54
PDLIM5-221ENST00000542407 HNRNPUL2Q1KMD3 747 aaKnown RBP11.69□□□□□ -0.54
PDLIM5-221ENST00000542407 HECW1Q76N89 1606 aa11.68□□□□□ -0.54
PDLIM5-221ENST00000542407 MAGI3Q5TCQ9 1506 aa11.67□□□□□ -0.54
PDLIM5-221ENST00000542407 CCDC18Q5T9S5 1454 aa11.66□□□□□ -0.54
PDLIM5-221ENST00000542407 KLHL34Q8N239 644 aa11.65□□□□□ -0.54
PDLIM5-221ENST00000542407 ARHGEF11O15085 1522 aa11.65□□□□□ -0.55
PDLIM5-221ENST00000542407 EHBP1L1Q8N3D4 1523 aa11.65□□□□□ -0.55
PDLIM5-221ENST00000542407 CHMP7Q8WUX9 453 aaPredicted RBP11.64□□□□□ -0.55
PDLIM5-221ENST00000542407 EPRSP07814 1512 aaKnown RBP11.64□□□□□ -0.55
PDLIM5-221ENST00000542407 ARXQ96QS3 562 aa11.63□□□□□ -0.55
PDLIM5-221ENST00000542407 ATP1B4Q9UN42 357 aaPredicted RBP11.63□□□□□ -0.55
PDLIM5-221ENST00000542407 CHD1O14646 1710 aa11.61□□□□□ -0.55
PDLIM5-221ENST00000542407 SUPT6HQ7KZ85 1726 aaKnown RBP11.61□□□□□ -0.55
PDLIM5-221ENST00000542407 RAPGEF6Q8TEU7 1601 aa11.61□□□□□ -0.55
PDLIM5-221ENST00000542407 CDK13Q14004 1512 aaKnown RBP11.61□□□□□ -0.55
PDLIM5-221ENST00000542407 NCOA2Q15596 1464 aa11.61□□□□□ -0.55
PDLIM5-221ENST00000542407 PKNOX2Q96KN3 472 aa11.61□□□□□ -0.55
PDLIM5-221ENST00000542407 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.6□□□□□ -0.55
PDLIM5-221ENST00000542407 NUP153P49790 1475 aaKnown RBP11.6□□□□□ -0.55
PDLIM5-221ENST00000542407 MTUS2Q5JR59 1369 aa11.6□□□□□ -0.55
PDLIM5-221ENST00000542407 FGD6Q6ZV73 1430 aa11.59□□□□□ -0.55
PDLIM5-221ENST00000542407 TIMELESSQ9UNS1 1208 aa11.58□□□□□ -0.56
PDLIM5-221ENST00000542407 FBLN2P98095 1184 aa11.58□□□□□ -0.56
PDLIM5-221ENST00000542407 SENP3Q9H4L4 574 aaPredicted RBP11.57□□□□□ -0.56
PDLIM5-221ENST00000542407 NPM3O75607 178 aaKnown RBP11.57□□□□□ -0.56
PDLIM5-221ENST00000542407 MYOM3Q5VTT5 1437 aa11.57□□□□□ -0.56
PDLIM5-221ENST00000542407 SHROOM2Q13796 1616 aa11.56□□□□□ -0.56
PDLIM5-221ENST00000542407 DHX57Q6P158 1386 aaKnown RBP11.56□□□□□ -0.56
PDLIM5-221ENST00000542407 JPH4Q96JJ6 628 aa11.56□□□□□ -0.56
PDLIM5-221ENST00000542407 CARMIL2Q6F5E8 1435 aa11.55□□□□□ -0.56
PDLIM5-221ENST00000542407 PLB1Q6P1J6 1458 aa11.55□□□□□ -0.56
PDLIM5-221ENST00000542407 ABCA8O94911 1581 aa11.54□□□□□ -0.56
PDLIM5-221ENST00000542407 TAOK2Q9UL54 1235 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms