RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 ERCC6Q03468 1493 aa13.46□□□□□ -0.26
CLIP1-214ENST00000540539 WRNQ14191 1432 aaPredicted RBP eCLIP13.45□□□□□ -0.26
CLIP1-214ENST00000540539 ITGAEP38570 1179 aa13.44□□□□□ -0.26
CLIP1-214ENST00000540539 CUX1P39880 1505 aa13.4□□□□□ -0.26
CLIP1-214ENST00000540539 SYNJ1O43426 1573 aa13.4□□□□□ -0.26
CLIP1-214ENST00000540539 ADRA2BP18089 450 aa13.39□□□□□ -0.27
CLIP1-214ENST00000540539 NBR1Q14596 966 aa13.39□□□□□ -0.27
CLIP1-214ENST00000540539 URB2Q14146 1524 aaKnown RBP13.38□□□□□ -0.27
CLIP1-214ENST00000540539 MRC2Q9UBG0 1479 aa13.38□□□□□ -0.27
CLIP1-214ENST00000540539 TOP2BQ02880 1626 aa13.38□□□□□ -0.27
CLIP1-214ENST00000540539 DNMBPQ6XZF7 1577 aa13.37□□□□□ -0.27
CLIP1-214ENST00000540539 BIVM-ERCC5R4GMW8 1640 aa13.36□□□□□ -0.27
CLIP1-214ENST00000540539 TOPBP1Q92547 1522 aa13.36□□□□□ -0.27
CLIP1-214ENST00000540539 THOC2Q8NI27 1593 aaKnown RBP13.34□□□□□ -0.27
CLIP1-214ENST00000540539 WDR62O43379 1518 aa13.32□□□□□ -0.28
CLIP1-214ENST00000540539 ZMYND15Q9H091 742 aa13.31□□□□□ -0.28
CLIP1-214ENST00000540539 NEFLP07196 543 aa13.3□□□□□ -0.28
CLIP1-214ENST00000540539 FGD5Q6ZNL6 1462 aa13.3□□□□□ -0.28
CLIP1-214ENST00000540539 POLA1P09884 1462 aaPredicted RBP13.28□□□□□ -0.28
CLIP1-214ENST00000540539 NOP58Q9Y2X3 529 aaKnown RBP13.26□□□□□ -0.29
CLIP1-214ENST00000540539 TIMELESSQ9UNS1 1208 aa13.25□□□□□ -0.29
CLIP1-214ENST00000540539 CDK11AQ9UQ88 783 aaPredicted RBP13.25□□□□□ -0.29
CLIP1-214ENST00000540539 PAK3O75914 559 aaPredicted RBP13.24□□□□□ -0.29
CLIP1-214ENST00000540539 RAD54L2Q9Y4B4 1467 aa13.23□□□□□ -0.29
CLIP1-214ENST00000540539 SOGA1O94964 1423 aa13.23□□□□□ -0.29
CLIP1-214ENST00000540539 RTL5Q5HYW3 569 aaPredicted RBP13.23□□□□□ -0.29
CLIP1-214ENST00000540539 GLIPR1L2Q4G1C9 344 aa13.22□□□□□ -0.29
CLIP1-214ENST00000540539 KCNH8Q96L42 1107 aa13.22□□□□□ -0.29
CLIP1-214ENST00000540539 CUX2O14529 1486 aa13.22□□□□□ -0.29
CLIP1-214ENST00000540539 VSIG10Q8N0Z9 540 aa13.22□□□□□ -0.29
CLIP1-214ENST00000540539 C11orf95C9JLR9 678 aaPredicted RBP13.19□□□□□ -0.3
CLIP1-214ENST00000540539 TARBP1Q13395 1621 aaKnown RBP13.19□□□□□ -0.3
CLIP1-214ENST00000540539 ABCA10Q8WWZ4 1543 aa13.18□□□□□ -0.3
CLIP1-214ENST00000540539 IFT140Q96RY7 1462 aa13.17□□□□□ -0.3
CLIP1-214ENST00000540539 SLC4A1APQ9BWU0 796 aaKnown RBP13.17□□□□□ -0.3
CLIP1-214ENST00000540539 WDR97A6NE52 1622 aa13.16□□□□□ -0.3
CLIP1-214ENST00000540539 RUSC2Q8N2Y8 1516 aa13.16□□□□□ -0.3
CLIP1-214ENST00000540539 A0A0U1RQG5 324 aaPredicted RBP13.15□□□□□ -0.3
CLIP1-214ENST00000540539 RSPH6AQ9H0K4 717 aa13.14□□□□□ -0.31
CLIP1-214ENST00000540539 KIF27Q86VH2 1401 aa13.14□□□□□ -0.31
CLIP1-214ENST00000540539 TDRD9Q8NDG6 1382 aaKnown RBP13.13□□□□□ -0.31
CLIP1-214ENST00000540539 PDE4CQ08493 712 aa13.13□□□□□ -0.31
CLIP1-214ENST00000540539 WASHC2AQ641Q2 1341 aa13.12□□□□□ -0.31
CLIP1-214ENST00000540539 ZNF608Q9ULD9 1512 aaPredicted RBP13.11□□□□□ -0.31
CLIP1-214ENST00000540539 FGD1P98174 961 aa13.11□□□□□ -0.31
CLIP1-214ENST00000540539 BRPF3Q9ULD4 1205 aa13.11□□□□□ -0.31
CLIP1-214ENST00000540539 EEA1Q15075 1411 aa13.11□□□□□ -0.31
CLIP1-214ENST00000540539 ABCA5Q8WWZ7 1642 aa13.09□□□□□ -0.31
CLIP1-214ENST00000540539 AQRO60306 1485 aaKnown RBP eCLIP13.09□□□□□ -0.312e-6■■■■■ 26.9
CLIP1-214ENST00000540539 WASHC2CQ9Y4E1 1318 aa13.09□□□□□ -0.31
CLIP1-214ENST00000540539 AAMPQ13685 434 aa13.09□□□□□ -0.31
CLIP1-214ENST00000540539 GAPVD1Q14C86 1478 aa13.08□□□□□ -0.31
CLIP1-214ENST00000540539 RBM10P98175 930 aaKnown RBP13.07□□□□□ -0.32
CLIP1-214ENST00000540539 EIF4G3O43432 1585 aaKnown RBP13.07□□□□□ -0.32
CLIP1-214ENST00000540539 PDIA4P13667 645 aaKnown RBP13.05□□□□□ -0.32
CLIP1-214ENST00000540539 IGF1RP08069 1367 aa13.04□□□□□ -0.32
CLIP1-214ENST00000540539 SENP3Q9H4L4 574 aaPredicted RBP13.04□□□□□ -0.32
CLIP1-214ENST00000540539 PBRM1Q86U86 1689 aa13.03□□□□□ -0.32
CLIP1-214ENST00000540539 GRIN2BQ13224 1484 aa13.02□□□□□ -0.33
CLIP1-214ENST00000540539 ERICH3Q5RHP9 1530 aa13.02□□□□□ -0.33
CLIP1-214ENST00000540539 BCL11BQ9C0K0 894 aaPredicted RBP12.99□□□□□ -0.33
CLIP1-214ENST00000540539 AMER1Q5JTC6 1135 aaPredicted RBP12.98□□□□□ -0.33
CLIP1-214ENST00000540539 IPO9Q96P70 1041 aaKnown RBP12.98□□□□□ -0.33
CLIP1-214ENST00000540539 CARMIL1Q5VZK9 1371 aa12.98□□□□□ -0.33
CLIP1-214ENST00000540539 TRIM52Q96A61 297 aa12.98□□□□□ -0.33
CLIP1-214ENST00000540539 CUL7Q14999 1698 aa12.97□□□□□ -0.33
CLIP1-214ENST00000540539 PRXQ9BXM0 1461 aa12.97□□□□□ -0.33
CLIP1-214ENST00000540539 IRX6P78412 446 aaPredicted RBP12.97□□□□□ -0.33
CLIP1-214ENST00000540539 SNAPC4Q5SXM2 1469 aa12.96□□□□□ -0.33
CLIP1-214ENST00000540539 NEFMP07197 916 aa12.96□□□□□ -0.33
CLIP1-214ENST00000540539 KIF21BO75037 1637 aa12.96□□□□□ -0.34
CLIP1-214ENST00000540539 ZBTB47Q9UFB7 747 aaPredicted RBP12.95□□□□□ -0.34
CLIP1-214ENST00000540539 MAGI1Q96QZ7 1491 aaPredicted RBP12.94□□□□□ -0.34
CLIP1-214ENST00000540539 ADAMTS12P58397 1594 aa12.94□□□□□ -0.34
CLIP1-214ENST00000540539 USP35Q9P2H5 1018 aa12.94□□□□□ -0.34
CLIP1-214ENST00000540539 RAPGEF2Q9Y4G8 1499 aa12.93□□□□□ -0.34
CLIP1-214ENST00000540539 FHAD1B1AJZ9 1412 aa12.93□□□□□ -0.34
CLIP1-214ENST00000540539 ANP32AP39687 249 aaKnown RBP12.92□□□□□ -0.34
CLIP1-214ENST00000540539 GOLGA3Q08378 1498 aa12.92□□□□□ -0.34
CLIP1-214ENST00000540539 HNRNPUL2Q1KMD3 747 aaKnown RBP12.91□□□□□ -0.34
CLIP1-214ENST00000540539 FAM43AQ8N2R8 423 aa12.91□□□□□ -0.34
CLIP1-214ENST00000540539 SYNJ2O15056 1496 aa12.9□□□□□ -0.35
CLIP1-214ENST00000540539 PPP4R2Q9NY27 417 aa12.89□□□□□ -0.35
CLIP1-214ENST00000540539 UBTFP17480 764 aaKnown RBP12.88□□□□□ -0.35
CLIP1-214ENST00000540539 FBLN2P98095 1184 aa12.88□□□□□ -0.35
CLIP1-214ENST00000540539 CHMP7Q8WUX9 453 aaPredicted RBP12.88□□□□□ -0.35
CLIP1-214ENST00000540539 HSP90AA2PQ14568 343 aaPredicted RBP12.88□□□□□ -0.35
CLIP1-214ENST00000540539 PPP6R1Q9UPN7 881 aa12.87□□□□□ -0.35
CLIP1-214ENST00000540539 RRP9O43818 475 aaKnown RBP12.86□□□□□ -0.35
CLIP1-214ENST00000540539 GRIN2AQ12879 1464 aa12.86□□□□□ -0.35
CLIP1-214ENST00000540539 GSE1Q14687 1217 aa12.85□□□□□ -0.35
CLIP1-214ENST00000540539 LAS1LQ9Y4W2 734 aaKnown RBP12.85□□□□□ -0.35
CLIP1-214ENST00000540539 CHD1O14646 1710 aa12.85□□□□□ -0.35
CLIP1-214ENST00000540539 B4GALNT3Q6L9W6 998 aa12.83□□□□□ -0.36
CLIP1-214ENST00000540539 TNIKQ9UKE5 1360 aa12.82□□□□□ -0.36
CLIP1-214ENST00000540539 KLHL34Q8N239 644 aa12.81□□□□□ -0.36
CLIP1-214ENST00000540539 CTTNBP2Q8WZ74 1663 aa12.8□□□□□ -0.36
CLIP1-214ENST00000540539 ZBTB22O15209 634 aa12.8□□□□□ -0.36
CLIP1-214ENST00000540539 CEP170Q5SW79 1584 aa12.78□□□□□ -0.36
CLIP1-214ENST00000540539 NUP160Q12769 1436 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms