RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 NISCHQ9Y2I1 1504 aa18.54■□□□□ 0.56
CLIP1-214ENST00000540539 PELP1Q8IZL8 1130 aaKnown RBP16.84■□□□□ 0.29
CLIP1-214ENST00000540539 CHIC1Q5VXU3 224 aa16.54■□□□□ 0.24
CLIP1-214ENST00000540539 MYT1Q01538 1121 aa16.42■□□□□ 0.22
CLIP1-214ENST00000540539 CCDC180Q9P1Z9 1646 aa16.31■□□□□ 0.2
CLIP1-214ENST00000540539 HRCP23327 699 aa16.15■□□□□ 0.18
CLIP1-214ENST00000540539 AEBP2Q6ZN18 517 aaPredicted RBP16.03■□□□□ 0.16
CLIP1-214ENST00000540539 SCAF1Q9H7N4 1312 aaKnown RBP15.78■□□□□ 0.12
CLIP1-214ENST00000540539 PPARGC1BQ86YN6 1023 aaKnown RBP15.78■□□□□ 0.12
CLIP1-214ENST00000540539 TTBK1Q5TCY1 1321 aaPredicted RBP15.7■□□□□ 0.1
CLIP1-214ENST00000540539 ABCC9O60706 1549 aa15.66■□□□□ 0.1
CLIP1-214ENST00000540539 ZCCHC6Q5VYS8 1495 aaKnown RBP15.52■□□□□ 0.07
CLIP1-214ENST00000540539 PRKCSHP14314 528 aaPredicted RBP15.42■□□□□ 0.06
CLIP1-214ENST00000540539 DCAF8L2P0C7V8 631 aa15.41■□□□□ 0.06
CLIP1-214ENST00000540539 PCGF6Q9BYE7 350 aa15.36■□□□□ 0.05
CLIP1-214ENST00000540539 DCAF1Q9Y4B6 1507 aa15.33■□□□□ 0.04
CLIP1-214ENST00000540539 BCL11AQ9H165 835 aa15.31■□□□□ 0.04
CLIP1-214ENST00000540539 MYO15BQ96JP2 1530 aa15.25■□□□□ 0.03
CLIP1-214ENST00000540539 NACADO15069 1562 aa15.25■□□□□ 0.03
CLIP1-214ENST00000540539 RB1CC1Q8TDY2 1594 aa15.18■□□□□ 0.02
CLIP1-214ENST00000540539 FAM9AQ8IZU1 332 aaPredicted RBP15.18■□□□□ 0.02
CLIP1-214ENST00000540539 ACIN1Q9UKV3 1341 aaKnown RBP15.08■□□□□ 0.01
CLIP1-214ENST00000540539 NEUROD1Q13562 356 aa15.02□□□□□ -0.01
CLIP1-214ENST00000540539 GTF3C3Q9Y5Q9 886 aa15□□□□□ -0.01
CLIP1-214ENST00000540539 CENPBP07199 599 aaPredicted RBP14.99□□□□□ -0.01
CLIP1-214ENST00000540539 ERICH6Q7L0X2 663 aa14.95□□□□□ -0.02
CLIP1-214ENST00000540539 SCRIBQ14160 1630 aa14.95□□□□□ -0.02
CLIP1-214ENST00000540539 APLP2Q06481 763 aa14.94□□□□□ -0.02
CLIP1-214ENST00000540539 SHROOM4Q9ULL8 1493 aa14.93□□□□□ -0.02
CLIP1-214ENST00000540539 PHF23Q9BUL5 403 aaPredicted RBP14.91□□□□□ -0.02
CLIP1-214ENST00000540539 UNC13AQ9UPW8 1703 aa14.88□□□□□ -0.03
CLIP1-214ENST00000540539 ZEB1P37275 1124 aaPredicted RBP14.83□□□□□ -0.03
CLIP1-214ENST00000540539 BICRAQ9NZM4 1560 aa14.73□□□□□ -0.05
CLIP1-214ENST00000540539 ANP32EQ9BTT0 268 aa14.71□□□□□ -0.05
CLIP1-214ENST00000540539 PABPN1Q86U42 306 aaKnown RBP eCLIP14.71□□□□□ -0.06
CLIP1-214ENST00000540539 TRIM26Q12899 539 aaPredicted RBP14.63□□□□□ -0.07
CLIP1-214ENST00000540539 CSRNP3Q8WYN3 585 aa14.6□□□□□ -0.07
CLIP1-214ENST00000540539 EHMT2Q96KQ7 1210 aa14.49□□□□□ -0.09
CLIP1-214ENST00000540539 CECR2Q9BXF3 1484 aa14.42□□□□□ -0.1
CLIP1-214ENST00000540539 BAZ1AQ9NRL2 1556 aaPredicted RBP14.34□□□□□ -0.11
CLIP1-214ENST00000540539 SUPT5HO00267 1087 aaKnown RBP14.34□□□□□ -0.11
CLIP1-214ENST00000540539 DIEXFQ68CQ4 756 aaKnown RBP14.34□□□□□ -0.11
CLIP1-214ENST00000540539 SMARCA4P51532 1647 aa14.32□□□□□ -0.12
CLIP1-214ENST00000540539 MROH2BQ7Z745 1585 aa14.31□□□□□ -0.12
CLIP1-214ENST00000540539 EIF4G1Q04637 1599 aaKnown RBP14.31□□□□□ -0.12
CLIP1-214ENST00000540539 SLC24A1O60721 1099 aa14.29□□□□□ -0.12
CLIP1-214ENST00000540539 RSF1Q96T23 1441 aaPredicted RBP14.28□□□□□ -0.12
CLIP1-214ENST00000540539 TSHZ2Q9NRE2 1034 aa14.27□□□□□ -0.13
CLIP1-214ENST00000540539 ANO8Q9HCE9 1232 aaPredicted RBP14.26□□□□□ -0.13
CLIP1-214ENST00000540539 YTHDC1Q96MU7 727 aaKnown RBP14.2□□□□□ -0.14
CLIP1-214ENST00000540539 LOC105371045A0A1W2PR82 267 aa14.19□□□□□ -0.14
CLIP1-214ENST00000540539 WIZO95785 1651 aa14.19□□□□□ -0.14
CLIP1-214ENST00000540539 CC2D2AQ9P2K1 1620 aa14.16□□□□□ -0.14
CLIP1-214ENST00000540539 PEG3Q9GZU2 1588 aa14.15□□□□□ -0.14
CLIP1-214ENST00000540539 ATAD2BQ9ULI0 1458 aa14.15□□□□□ -0.14
CLIP1-214ENST00000540539 SMARCA2P51531 1590 aa14.14□□□□□ -0.15
CLIP1-214ENST00000540539 UBE2Q2Q8WVN8 375 aa14.1□□□□□ -0.15
CLIP1-214ENST00000540539 SUPT16HQ9Y5B9 1047 aaKnown RBP14.09□□□□□ -0.15
CLIP1-214ENST00000540539 NCAPD3P42695 1498 aa14.07□□□□□ -0.16
CLIP1-214ENST00000540539 EIF5BO60841 1220 aaKnown RBP14.06□□□□□ -0.16
CLIP1-214ENST00000540539 BAZ1BQ9UIG0 1483 aaKnown RBP14.06□□□□□ -0.16
CLIP1-214ENST00000540539 DNAJC5BQ9UF47 199 aa14.05□□□□□ -0.16
CLIP1-214ENST00000540539 TRIM41Q8WV44 630 aa14.04□□□□□ -0.16
CLIP1-214ENST00000540539 TOP2AP11388 1531 aaKnown RBP14.03□□□□□ -0.16
CLIP1-214ENST00000540539 HMGXB3Q12766 1538 aa14.03□□□□□ -0.16
CLIP1-214ENST00000540539 CLSPNQ9HAW4 1339 aa14□□□□□ -0.17
CLIP1-214ENST00000540539 SALL2Q9Y467 1007 aaPredicted RBP13.99□□□□□ -0.17
CLIP1-214ENST00000540539 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.93□□□□□ -0.18
CLIP1-214ENST00000540539 CCDC136Q96JN2 1154 aa13.93□□□□□ -0.18
CLIP1-214ENST00000540539 DAXXQ9UER7 740 aaPredicted RBP13.93□□□□□ -0.18
CLIP1-214ENST00000540539 CCER1Q8TC90 406 aaPredicted RBP13.91□□□□□ -0.18
CLIP1-214ENST00000540539 MIER1Q8N108 512 aa13.91□□□□□ -0.18
CLIP1-214ENST00000540539 PLPPR3Q6T4P5 718 aa13.89□□□□□ -0.19
CLIP1-214ENST00000540539 CCDC88BA6NC98 1476 aa13.88□□□□□ -0.19
CLIP1-214ENST00000540539 ZNF316A6NFI3 1004 aaPredicted RBP13.85□□□□□ -0.19
CLIP1-214ENST00000540539 PLEKHG5O94827 1062 aa13.84□□□□□ -0.19
CLIP1-214ENST00000540539 MSH5O43196 834 aa13.83□□□□□ -0.19
CLIP1-214ENST00000540539 RBM19Q9Y4C8 960 aaKnown RBP13.83□□□□□ -0.2
CLIP1-214ENST00000540539 DEKP35659 375 aaKnown RBP13.81□□□□□ -0.2
CLIP1-214ENST00000540539 ERICH6BQ5W0A0 696 aa13.81□□□□□ -0.2
CLIP1-214ENST00000540539 KCNA4P22459 653 aa13.79□□□□□ -0.2
CLIP1-214ENST00000540539 PKNOX2Q96KN3 472 aa13.78□□□□□ -0.2
CLIP1-214ENST00000540539 MYT1LQ9UL68 1186 aa13.77□□□□□ -0.21
CLIP1-214ENST00000540539 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.72□□□□□ -0.21
CLIP1-214ENST00000540539 CADPSQ9ULU8 1353 aa13.69□□□□□ -0.22
CLIP1-214ENST00000540539 CFTRP13569 1480 aa13.68□□□□□ -0.22
CLIP1-214ENST00000540539 PODXL2Q9NZ53 605 aa13.66□□□□□ -0.22
CLIP1-214ENST00000540539 NESP48681 1621 aa13.66□□□□□ -0.22
CLIP1-214ENST00000540539 LAMC3Q9Y6N6 1575 aa13.64□□□□□ -0.23
CLIP1-214ENST00000540539 BCANQ96GW7 911 aa13.64□□□□□ -0.23
CLIP1-214ENST00000540539 PRDM2Q13029 1718 aa13.61□□□□□ -0.23
CLIP1-214ENST00000540539 FANCIQ9NVI1 1328 aa13.6□□□□□ -0.23
CLIP1-214ENST00000540539 IL27Q8NEV9 243 aa13.57□□□□□ -0.24
CLIP1-214ENST00000540539 PDS5BQ9NTI5 1447 aa13.54□□□□□ -0.24
CLIP1-214ENST00000540539 FANCD2Q9BXW9 1451 aa13.54□□□□□ -0.24
CLIP1-214ENST00000540539 RTN4Q9NQC3 1192 aaKnown RBP13.53□□□□□ -0.24
CLIP1-214ENST00000540539 KIF21AQ7Z4S6 1674 aa13.5□□□□□ -0.25
CLIP1-214ENST00000540539 ABCC8Q09428 1581 aa13.5□□□□□ -0.25
CLIP1-214ENST00000540539 FKBP8Q14318 412 aa13.49□□□□□ -0.25
CLIP1-214ENST00000540539 CEP164Q9UPV0 1460 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms