RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 HIRIP3Q9BW71 556 aaPredicted RBP24.8■■□□□ 1.56
USP28-208ENST00000540438 POLA1P09884 1462 aaPredicted RBP24.8■■□□□ 1.56
USP28-208ENST00000540438 CENPBP07199 599 aaPredicted RBP24.79■■□□□ 1.56
USP28-208ENST00000540438 PHLDB1Q86UU1 1377 aa24.78■■□□□ 1.56
USP28-208ENST00000540438 TOPBP1Q92547 1522 aa24.76■■□□□ 1.55
USP28-208ENST00000540438 RAB3GAP2Q9H2M9 1393 aa24.72■■□□□ 1.55
USP28-208ENST00000540438 RRBP1Q9P2E9 1410 aaKnown RBP24.67■■□□□ 1.54
USP28-208ENST00000540438 URB2Q14146 1524 aaKnown RBP24.65■■□□□ 1.54
USP28-208ENST00000540438 CHIC2Q9UKJ5 165 aa24.61■■□□□ 1.53
USP28-208ENST00000540438 PRDM2Q13029 1718 aa24.61■■□□□ 1.53
USP28-208ENST00000540438 LRRC9Q6ZRR7 1453 aa24.6■■□□□ 1.53
USP28-208ENST00000540438 DNMBPQ6XZF7 1577 aa24.58■■□□□ 1.53
USP28-208ENST00000540438 TIAM1Q13009 1591 aa24.58■■□□□ 1.52
USP28-208ENST00000540438 KCNH8Q96L42 1107 aa24.58■■□□□ 1.52
USP28-208ENST00000540438 PCF11O94913 1555 aaKnown RBP24.57■■□□□ 1.52
USP28-208ENST00000540438 ABCA10Q8WWZ4 1543 aa24.54■■□□□ 1.52
USP28-208ENST00000540438 AQRO60306 1485 aaKnown RBP eCLIP24.52■■□□□ 1.524e-6■■■■□ 22.1
USP28-208ENST00000540438 MTUS2Q5JR59 1369 aa24.51■■□□□ 1.51
USP28-208ENST00000540438 FHAD1B1AJZ9 1412 aa24.49■■□□□ 1.51
USP28-208ENST00000540438 FBLN2P98095 1184 aa24.48■■□□□ 1.51
USP28-208ENST00000540438 RRP7BPQ9NSQ0 103 aa24.48■■□□□ 1.51
USP28-208ENST00000540438 GAPVD1Q14C86 1478 aa24.48■■□□□ 1.51
USP28-208ENST00000540438 SETD5Q9C0A6 1442 aa24.47■■□□□ 1.51
USP28-208ENST00000540438 DDX10Q13206 875 aaKnown RBP24.47■■□□□ 1.51
USP28-208ENST00000540438 PDS5BQ9NTI5 1447 aa24.43■■□□□ 1.5
USP28-208ENST00000540438 CLSPNQ9HAW4 1339 aa24.38■■□□□ 1.49
USP28-208ENST00000540438 KIF21AQ7Z4S6 1674 aa24.36■■□□□ 1.49
USP28-208ENST00000540438 MAPKBP1O60336 1514 aa24.36■■□□□ 1.49
USP28-208ENST00000540438 FOXD1Q16676 465 aa24.35■■□□□ 1.49
USP28-208ENST00000540438 TRIM52Q96A61 297 aa24.34■■□□□ 1.49
USP28-208ENST00000540438 CASKIN1Q8WXD9 1431 aa24.33■■□□□ 1.49
USP28-208ENST00000540438 PTPRKQ15262 1439 aa24.32■■□□□ 1.48
USP28-208ENST00000540438 LAMC3Q9Y6N6 1575 aa24.31■■□□□ 1.48
USP28-208ENST00000540438 FMN1Q68DA7 1419 aa24.28■■□□□ 1.48
USP28-208ENST00000540438 ZNF608Q9ULD9 1512 aaPredicted RBP24.27■■□□□ 1.48
USP28-208ENST00000540438 WDR97A6NE52 1622 aa24.26■■□□□ 1.47
USP28-208ENST00000540438 FYCO1Q9BQS8 1478 aa24.26■■□□□ 1.47
USP28-208ENST00000540438 FGD6Q6ZV73 1430 aa24.25■■□□□ 1.47
USP28-208ENST00000540438 SNAPC4Q5SXM2 1469 aa24.22■■□□□ 1.47
USP28-208ENST00000540438 ZNF644Q9H582 1327 aaPredicted RBP24.21■■□□□ 1.47
USP28-208ENST00000540438 CNGB1Q14028 1251 aaPredicted RBP24.2■■□□□ 1.46
USP28-208ENST00000540438 CUL7Q14999 1698 aa24.19■■□□□ 1.46
USP28-208ENST00000540438 NCOA2Q15596 1464 aa24.19■■□□□ 1.46
USP28-208ENST00000540438 CTTNBP2Q8WZ74 1663 aa24.19■■□□□ 1.46
USP28-208ENST00000540438 ZNF777Q9ULD5 760 aaPredicted RBP24.19■■□□□ 1.46
USP28-208ENST00000540438 MAP3K1Q13233 1512 aa24.18■■□□□ 1.46
USP28-208ENST00000540438 CFAP43Q8NDM7 1665 aa24.17■■□□□ 1.46
USP28-208ENST00000540438 CDK13Q14004 1512 aaKnown RBP24.16■■□□□ 1.46
USP28-208ENST00000540438 ABCA5Q8WWZ7 1642 aa24.16■■□□□ 1.46
USP28-208ENST00000540438 PPP1R15AO75807 674 aaPredicted RBP24.16■■□□□ 1.46
USP28-208ENST00000540438 EFCAB5A4FU69 1503 aa24.15■■□□□ 1.46
USP28-208ENST00000540438 TONSLQ96HA7 1378 aa24.14■■□□□ 1.46
USP28-208ENST00000540438 BCANQ96GW7 911 aa24.13■■□□□ 1.45
USP28-208ENST00000540438 MAGI3Q5TCQ9 1506 aa24.12■■□□□ 1.45
USP28-208ENST00000540438 CHMP7Q8WUX9 453 aaPredicted RBP24.11■■□□□ 1.45
USP28-208ENST00000540438 CCDC18Q5T9S5 1454 aa24.11■■□□□ 1.45
USP28-208ENST00000540438 LRRIQ1Q96JM4 1722 aa24.11■■□□□ 1.45
USP28-208ENST00000540438 TARBP1Q13395 1621 aaKnown RBP24.08■■□□□ 1.45
USP28-208ENST00000540438 MYOM3Q5VTT5 1437 aa24.08■■□□□ 1.44
USP28-208ENST00000540438 GRIN2BQ13224 1484 aa24.07■■□□□ 1.44
USP28-208ENST00000540438 ERCC6Q03468 1493 aa24.05■■□□□ 1.44
USP28-208ENST00000540438 NAIPQ13075 1403 aa24.03■■□□□ 1.44
USP28-208ENST00000540438 MRC2Q9UBG0 1479 aa24.01■■□□□ 1.43
USP28-208ENST00000540438 SAMD9Q5K651 1589 aa24■■□□□ 1.43
USP28-208ENST00000540438 ZNF326Q5BKZ1 582 aaKnown RBP23.98■■□□□ 1.43
USP28-208ENST00000540438 EPRSP07814 1512 aaKnown RBP23.96■■□□□ 1.43
USP28-208ENST00000540438 THOC2Q8NI27 1593 aaKnown RBP23.95■■□□□ 1.42
USP28-208ENST00000540438 HFM1A2PYH4 1435 aa23.94■■□□□ 1.42
USP28-208ENST00000540438 IQGAP2Q13576 1575 aa23.94■■□□□ 1.42
USP28-208ENST00000540438 SENP3-EIF4A1A0A087X0R7 540 aa23.94■■□□□ 1.42
USP28-208ENST00000540438 POLR3GLQ9BT43 218 aa23.94■■□□□ 1.42
USP28-208ENST00000540438 MPHOSPH9Q99550 1183 aa23.94■■□□□ 1.42
USP28-208ENST00000540438 SUPT16HQ9Y5B9 1047 aaKnown RBP23.93■■□□□ 1.42
USP28-208ENST00000540438 PBRM1Q86U86 1689 aa23.92■■□□□ 1.42
USP28-208ENST00000540438 KDM6BO15054 1643 aa23.9■■□□□ 1.42
USP28-208ENST00000540438 PTPN23Q9H3S7 1636 aa23.9■■□□□ 1.42
USP28-208ENST00000540438 ANP32CO43423 234 aa23.9■■□□□ 1.42
USP28-208ENST00000540438 UACAQ9BZF9 1416 aa23.9■■□□□ 1.42
USP28-208ENST00000540438 L3MBTL2Q969R5 705 aa23.89■■□□□ 1.41
USP28-208ENST00000540438 PRG4Q92954 1404 aaPredicted RBP23.88■■□□□ 1.41
USP28-208ENST00000540438 SUPT6HQ7KZ85 1726 aaKnown RBP23.88■■□□□ 1.41
USP28-208ENST00000540438 SLC4A1APQ9BWU0 796 aaKnown RBP23.87■■□□□ 1.41
USP28-208ENST00000540438 ADAMTS12P58397 1594 aa23.87■■□□□ 1.41
USP28-208ENST00000540438 HSPA5P11021 654 aaKnown RBP23.86■■□□□ 1.41
USP28-208ENST00000540438 CFDP1Q9UEE9 299 aaPredicted RBP23.86■■□□□ 1.41
USP28-208ENST00000540438 JPH4Q96JJ6 628 aa23.86■■□□□ 1.41
USP28-208ENST00000540438 EHBP1L1Q8N3D4 1523 aa23.85■■□□□ 1.41
USP28-208ENST00000540438 PLB1Q6P1J6 1458 aa23.85■■□□□ 1.41
USP28-208ENST00000540438 UGGT2Q9NYU1 1516 aa23.85■■□□□ 1.41
USP28-208ENST00000540438 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.83■■□□□ 1.41
USP28-208ENST00000540438 FKBP8Q14318 412 aa23.8■■□□□ 1.4
USP28-208ENST00000540438 PELP1Q8IZL8 1130 aaKnown RBP23.8■■□□□ 1.4
USP28-208ENST00000540438 IFT140Q96RY7 1462 aa23.79■■□□□ 1.4
USP28-208ENST00000540438 C11orf95C9JLR9 678 aaPredicted RBP23.79■■□□□ 1.4
USP28-208ENST00000540438 DISP1Q96F81 1524 aa23.79■■□□□ 1.4
USP28-208ENST00000540438 CDK11AQ9UQ88 783 aaPredicted RBP23.78■■□□□ 1.4
USP28-208ENST00000540438 NBPF8Q3BBV2 869 aa23.77■■□□□ 1.4
USP28-208ENST00000540438 IRX6P78412 446 aaPredicted RBP23.76■■□□□ 1.39
USP28-208ENST00000540438 GRIN2AQ12879 1464 aa23.76■■□□□ 1.39
USP28-208ENST00000540438 HECW1Q76N89 1606 aa23.76■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms