RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 CDK11AQ9UQ88 783 aaPredicted RBP15.45■□□□□ 0.06
CLIP1-213ENST00000540338 FHOD3Q2V2M9 1422 aa15.44■□□□□ 0.06
CLIP1-213ENST00000540338 FMN1Q68DA7 1419 aa15.43■□□□□ 0.06
CLIP1-213ENST00000540338 ACIN1Q9UKV3 1341 aaKnown RBP15.43■□□□□ 0.06
CLIP1-213ENST00000540338 POLA1P09884 1462 aaPredicted RBP15.43■□□□□ 0.06
CLIP1-213ENST00000540338 DNMBPQ6XZF7 1577 aa15.43■□□□□ 0.06
CLIP1-213ENST00000540338 CHMP7Q8WUX9 453 aaPredicted RBP15.42■□□□□ 0.06
CLIP1-213ENST00000540338 GAPVD1Q14C86 1478 aa15.39■□□□□ 0.06
CLIP1-213ENST00000540338 PELP1Q8IZL8 1130 aaKnown RBP15.37■□□□□ 0.05
CLIP1-213ENST00000540338 ERCC6Q03468 1493 aa15.37■□□□□ 0.05
CLIP1-213ENST00000540338 ABCA10Q8WWZ4 1543 aa15.37■□□□□ 0.05
CLIP1-213ENST00000540338 LAMC3Q9Y6N6 1575 aa15.36■□□□□ 0.05
CLIP1-213ENST00000540338 SETD5Q9C0A6 1442 aa15.35■□□□□ 0.05
CLIP1-213ENST00000540338 MIER1Q8N108 512 aa15.35■□□□□ 0.05
CLIP1-213ENST00000540338 DHX57Q6P158 1386 aaKnown RBP15.34■□□□□ 0.05
CLIP1-213ENST00000540338 CHIC2Q9UKJ5 165 aa15.34■□□□□ 0.05
CLIP1-213ENST00000540338 RAB3GAP2Q9H2M9 1393 aa15.34■□□□□ 0.05
CLIP1-213ENST00000540338 DNAJC5BQ9UF47 199 aa15.33■□□□□ 0.05
CLIP1-213ENST00000540338 GTF3C3Q9Y5Q9 886 aa15.33■□□□□ 0.04
CLIP1-213ENST00000540338 RRBP1Q9P2E9 1410 aaKnown RBP15.32■□□□□ 0.04
CLIP1-213ENST00000540338 TONSLQ96HA7 1378 aa15.32■□□□□ 0.04
CLIP1-213ENST00000540338 LRRC9Q6ZRR7 1453 aa15.3■□□□□ 0.04
CLIP1-213ENST00000540338 ZNF777Q9ULD5 760 aaPredicted RBP15.28■□□□□ 0.04
CLIP1-213ENST00000540338 RRP7BPQ9NSQ0 103 aa15.28■□□□□ 0.04
CLIP1-213ENST00000540338 CASKIN1Q8WXD9 1431 aa15.27■□□□□ 0.03
CLIP1-213ENST00000540338 SIN3AQ96ST3 1273 aa15.27■□□□□ 0.03
CLIP1-213ENST00000540338 URB2Q14146 1524 aaKnown RBP15.26■□□□□ 0.03
CLIP1-213ENST00000540338 PHLDB1Q86UU1 1377 aa15.26■□□□□ 0.03
CLIP1-213ENST00000540338 EFCAB5A4FU69 1503 aa15.26■□□□□ 0.03
CLIP1-213ENST00000540338 SCAF1Q9H7N4 1312 aaKnown RBP15.25■□□□□ 0.03
CLIP1-213ENST00000540338 PRDM2Q13029 1718 aa15.24■□□□□ 0.03
CLIP1-213ENST00000540338 AQRO60306 1485 aaKnown RBP eCLIP15.24■□□□□ 0.037e-7■■■■■ 48.1
CLIP1-213ENST00000540338 TIAM1Q13009 1591 aa15.24■□□□□ 0.03
CLIP1-213ENST00000540338 FYCO1Q9BQS8 1478 aa15.23■□□□□ 0.03
CLIP1-213ENST00000540338 TIMELESSQ9UNS1 1208 aa15.23■□□□□ 0.03
CLIP1-213ENST00000540338 CUL7Q14999 1698 aa15.21■□□□□ 0.03
CLIP1-213ENST00000540338 MRC2Q9UBG0 1479 aa15.21■□□□□ 0.03
CLIP1-213ENST00000540338 MAP3K1Q13233 1512 aa15.21■□□□□ 0.02
CLIP1-213ENST00000540338 ANP32CO43423 234 aa15.2■□□□□ 0.02
CLIP1-213ENST00000540338 DDX10Q13206 875 aaKnown RBP15.2■□□□□ 0.02
CLIP1-213ENST00000540338 GRIN2BQ13224 1484 aa15.18■□□□□ 0.02
CLIP1-213ENST00000540338 PLEKHD1A6NEE1 506 aa15.17■□□□□ 0.02
CLIP1-213ENST00000540338 CFDP1Q9UEE9 299 aaPredicted RBP15.16■□□□□ 0.02
CLIP1-213ENST00000540338 NEFLP07196 543 aa15.16■□□□□ 0.02
CLIP1-213ENST00000540338 FGD6Q6ZV73 1430 aa15.15■□□□□ 0.02
CLIP1-213ENST00000540338 IFT140Q96RY7 1462 aa15.13■□□□□ 0.01
CLIP1-213ENST00000540338 PCF11O94913 1555 aaKnown RBP15.13■□□□□ 0.01
CLIP1-213ENST00000540338 CARMIL2Q6F5E8 1435 aa15.12■□□□□ 0.01
CLIP1-213ENST00000540338 POLR3GLQ9BT43 218 aa15.12■□□□□ 0.01
CLIP1-213ENST00000540338 HIRIP3Q9BW71 556 aaPredicted RBP15.12■□□□□ 0.01
CLIP1-213ENST00000540338 TSPY4P0CV99 314 aa15.1■□□□□ 0.01
CLIP1-213ENST00000540338 TSPY10P0CW01 314 aa15.1■□□□□ 0.01
CLIP1-213ENST00000540338 MYOM3Q5VTT5 1437 aa15.1■□□□□ 0.01
CLIP1-213ENST00000540338 SLC4A1APQ9BWU0 796 aaKnown RBP15.1■□□□□ 0.01
CLIP1-213ENST00000540338 CCDC18Q5T9S5 1454 aa15.09■□□□□ 0.01
CLIP1-213ENST00000540338 ZNF326Q5BKZ1 582 aaKnown RBP15.09■□□□□ 0.01
CLIP1-213ENST00000540338 JPH4Q96JJ6 628 aa15.09■□□□□ 0.01
CLIP1-213ENST00000540338 MYT1LQ9UL68 1186 aa15.08■□□□□ 0
CLIP1-213ENST00000540338 NCOA2Q15596 1464 aa15.08■□□□□ 0
CLIP1-213ENST00000540338 PPP1R15AO75807 674 aaPredicted RBP15.07■□□□□ 0
CLIP1-213ENST00000540338 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.07■□□□□ 0
CLIP1-213ENST00000540338 EIF4G2P78344 907 aaKnown RBP eCLIP15.02■□□□□ -0
CLIP1-213ENST00000540338 EHBP1L1Q8N3D4 1523 aa15.01□□□□□ -0.01
CLIP1-213ENST00000540338 MPHOSPH9Q99550 1183 aa15□□□□□ -0.01
CLIP1-213ENST00000540338 SNAPC4Q5SXM2 1469 aa15□□□□□ -0.01
CLIP1-213ENST00000540338 IQGAP2Q13576 1575 aa15□□□□□ -0.01
CLIP1-213ENST00000540338 CNGB1Q14028 1251 aaPredicted RBP14.99□□□□□ -0.01
CLIP1-213ENST00000540338 KIAA0586Q9BVV6 1533 aa14.99□□□□□ -0.01
CLIP1-213ENST00000540338 CTTNBP2Q8WZ74 1663 aa14.98□□□□□ -0.01
CLIP1-213ENST00000540338 UACAQ9BZF9 1416 aa14.98□□□□□ -0.01
CLIP1-213ENST00000540338 KIF21AQ7Z4S6 1674 aa14.97□□□□□ -0.01
CLIP1-213ENST00000540338 ZNF608Q9ULD9 1512 aaPredicted RBP14.97□□□□□ -0.01
CLIP1-213ENST00000540338 HECW1Q76N89 1606 aa14.96□□□□□ -0.02
CLIP1-213ENST00000540338 ABCA5Q8WWZ7 1642 aa14.95□□□□□ -0.02
CLIP1-213ENST00000540338 HFM1A2PYH4 1435 aa14.95□□□□□ -0.02
CLIP1-213ENST00000540338 EPRSP07814 1512 aaKnown RBP14.95□□□□□ -0.02
CLIP1-213ENST00000540338 KCNH8Q96L42 1107 aa14.94□□□□□ -0.02
CLIP1-213ENST00000540338 FOXD1Q16676 465 aa14.94□□□□□ -0.02
CLIP1-213ENST00000540338 SUPT6HQ7KZ85 1726 aaKnown RBP14.94□□□□□ -0.02
CLIP1-213ENST00000540338 MIA2Q96PC5 1412 aa14.92□□□□□ -0.02
CLIP1-213ENST00000540338 CFAP43Q8NDM7 1665 aa14.91□□□□□ -0.02
CLIP1-213ENST00000540338 ZNF644Q9H582 1327 aaPredicted RBP14.91□□□□□ -0.02
CLIP1-213ENST00000540338 GRIN2AQ12879 1464 aa14.9□□□□□ -0.02
CLIP1-213ENST00000540338 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.9□□□□□ -0.022e-7■■□□□ 13.3
CLIP1-213ENST00000540338 ANKRD30AQ9BXX3 1397 aa14.9□□□□□ -0.02
CLIP1-213ENST00000540338 CDK13Q14004 1512 aaKnown RBP14.89□□□□□ -0.03
CLIP1-213ENST00000540338 THOC2Q8NI27 1593 aaKnown RBP14.89□□□□□ -0.03
CLIP1-213ENST00000540338 PTPRGP23470 1445 aa14.89□□□□□ -0.03
CLIP1-213ENST00000540338 NAIPQ13075 1403 aa14.88□□□□□ -0.03
CLIP1-213ENST00000540338 MAGI1Q96QZ7 1491 aaPredicted RBP14.88□□□□□ -0.03
CLIP1-213ENST00000540338 L3MBTL2Q969R5 705 aa14.88□□□□□ -0.03
CLIP1-213ENST00000540338 HSPA5P11021 654 aaKnown RBP14.87□□□□□ -0.03
CLIP1-213ENST00000540338 KDM2AQ9Y2K7 1162 aa14.87□□□□□ -0.03
CLIP1-213ENST00000540338 SYNJ2O15056 1496 aa14.87□□□□□ -0.03
CLIP1-213ENST00000540338 ADAMTS12P58397 1594 aa14.87□□□□□ -0.03
CLIP1-213ENST00000540338 TARBP1Q13395 1621 aaKnown RBP14.86□□□□□ -0.03
CLIP1-213ENST00000540338 PKD2Q13563 968 aa14.86□□□□□ -0.03
CLIP1-213ENST00000540338 CCER2I3L3R5 266 aa14.85□□□□□ -0.03
CLIP1-213ENST00000540338 HNRNPUQ00839 825 aaKnown RBP eCLIP14.84□□□□□ -0.03
CLIP1-213ENST00000540338 BCANQ96GW7 911 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 117.9 ms