RNA–Protein interactions for RNA: ENST00000535493.5

HDAC4-214, Transcript of histone deacetylase 4, humanhuman

TSL 2

Gene HDAC4, Length 2,743 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-214ENST00000535493 CUX2O14529 1486 aa19.05■□□□□ 0.64
HDAC4-214ENST00000535493 BIVM-ERCC5R4GMW8 1640 aa19.04■□□□□ 0.64
HDAC4-214ENST00000535493 PHLDB1Q86UU1 1377 aa19.04■□□□□ 0.64
HDAC4-214ENST00000535493 PPP1R15AO75807 674 aaPredicted RBP19.02■□□□□ 0.64
HDAC4-214ENST00000535493 SETD5Q9C0A6 1442 aa19.02■□□□□ 0.64
HDAC4-214ENST00000535493 RBM19Q9Y4C8 960 aaKnown RBP18.99■□□□□ 0.63
HDAC4-214ENST00000535493 NEFLP07196 543 aa18.98■□□□□ 0.63
HDAC4-214ENST00000535493 IRX6P78412 446 aaPredicted RBP18.97■□□□□ 0.63
HDAC4-214ENST00000535493 IGF1RP08069 1367 aa18.96■□□□□ 0.63
HDAC4-214ENST00000535493 ANP32CO43423 234 aa18.95■□□□□ 0.62
HDAC4-214ENST00000535493 LRRC9Q6ZRR7 1453 aa18.9■□□□□ 0.62
HDAC4-214ENST00000535493 CARMIL1Q5VZK9 1371 aa18.89■□□□□ 0.61
HDAC4-214ENST00000535493 TIAM1Q13009 1591 aa18.89■□□□□ 0.61
HDAC4-214ENST00000535493 BCL11AQ9H165 835 aa18.87■□□□□ 0.61
HDAC4-214ENST00000535493 HNRNPUQ00839 825 aaKnown RBP eCLIP18.82■□□□□ 0.6
HDAC4-214ENST00000535493 CFTRP13569 1480 aa18.82■□□□□ 0.6
HDAC4-214ENST00000535493 MSH5O43196 834 aa18.81■□□□□ 0.6
HDAC4-214ENST00000535493 FHOD3Q2V2M9 1422 aa18.81■□□□□ 0.6
HDAC4-214ENST00000535493 CCER2I3L3R5 266 aa18.8■□□□□ 0.6
HDAC4-214ENST00000535493 TONSLQ96HA7 1378 aa18.8■□□□□ 0.6
HDAC4-214ENST00000535493 NCAPD3P42695 1498 aa18.79■□□□□ 0.6
HDAC4-214ENST00000535493 PCF11O94913 1555 aaKnown RBP18.73■□□□□ 0.59
HDAC4-214ENST00000535493 FGD5Q6ZNL6 1462 aa18.72■□□□□ 0.59
HDAC4-214ENST00000535493 TIMELESSQ9UNS1 1208 aa18.72■□□□□ 0.59
HDAC4-214ENST00000535493 FHAD1B1AJZ9 1412 aa18.71■□□□□ 0.59
HDAC4-214ENST00000535493 CCDC184Q52MB2 194 aa18.71■□□□□ 0.59
HDAC4-214ENST00000535493 CHIC2Q9UKJ5 165 aa18.7■□□□□ 0.58
HDAC4-214ENST00000535493 PTPRKQ15262 1439 aa18.69■□□□□ 0.58
HDAC4-214ENST00000535493 CNGB1Q14028 1251 aaPredicted RBP18.69■□□□□ 0.58
HDAC4-214ENST00000535493 HMGXB3Q12766 1538 aa18.69■□□□□ 0.58
HDAC4-214ENST00000535493 MAP3K1Q13233 1512 aa18.68■□□□□ 0.58
HDAC4-214ENST00000535493 RRP7BPQ9NSQ0 103 aa18.67■□□□□ 0.58
HDAC4-214ENST00000535493 RAD54L2Q9Y4B4 1467 aa18.64■□□□□ 0.57
HDAC4-214ENST00000535493 CCDC18Q5T9S5 1454 aa18.64■□□□□ 0.57
HDAC4-214ENST00000535493 WASHC2AQ641Q2 1341 aa18.64■□□□□ 0.57
HDAC4-214ENST00000535493 AQRO60306 1485 aaKnown RBP eCLIP18.63■□□□□ 0.576e-9■■■■■ 37.6
HDAC4-214ENST00000535493 SENP3-EIF4A1A0A087X0R7 540 aa18.63■□□□□ 0.57
HDAC4-214ENST00000535493 HSPA5P11021 654 aaKnown RBP18.63■□□□□ 0.57
HDAC4-214ENST00000535493 FAM9BQ8IZU0 186 aa18.63■□□□□ 0.57
HDAC4-214ENST00000535493 CDK11AQ9UQ88 783 aaPredicted RBP18.63■□□□□ 0.57
HDAC4-214ENST00000535493 FOXD1Q16676 465 aa18.63■□□□□ 0.57
HDAC4-214ENST00000535493 MTUS2Q5JR59 1369 aa18.63■□□□□ 0.57
HDAC4-214ENST00000535493 CADPSQ9ULU8 1353 aa18.62■□□□□ 0.57
HDAC4-214ENST00000535493 FGD6Q6ZV73 1430 aa18.61■□□□□ 0.57
HDAC4-214ENST00000535493 ARID3CA6NKF2 412 aa18.61■□□□□ 0.57
HDAC4-214ENST00000535493 B4GALNT3Q6L9W6 998 aa18.58■□□□□ 0.57
HDAC4-214ENST00000535493 ERICH6Q7L0X2 663 aa18.58■□□□□ 0.56
HDAC4-214ENST00000535493 C11orf95C9JLR9 678 aaPredicted RBP18.57■□□□□ 0.56
HDAC4-214ENST00000535493 CFAP43Q8NDM7 1665 aa18.56■□□□□ 0.56
HDAC4-214ENST00000535493 CASKIN1Q8WXD9 1431 aa18.55■□□□□ 0.56
HDAC4-214ENST00000535493 UACAQ9BZF9 1416 aa18.55■□□□□ 0.56
HDAC4-214ENST00000535493 NAIPQ13075 1403 aa18.53■□□□□ 0.56
HDAC4-214ENST00000535493 FYCO1Q9BQS8 1478 aa18.52■□□□□ 0.56
HDAC4-214ENST00000535493 HFM1A2PYH4 1435 aa18.52■□□□□ 0.56
HDAC4-214ENST00000535493 EIF4G2P78344 907 aaKnown RBP eCLIP18.5■□□□□ 0.557e-7■■■■■ 38
HDAC4-214ENST00000535493 MRS2Q9HD23 443 aa18.5■□□□□ 0.55
HDAC4-214ENST00000535493 L3MBTL2Q969R5 705 aa18.49■□□□□ 0.55
HDAC4-214ENST00000535493 FANCIQ9NVI1 1328 aa18.48■□□□□ 0.55
HDAC4-214ENST00000535493 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.48■□□□□ 0.557e-7■■■■■ 52.8
HDAC4-214ENST00000535493 PTPN23Q9H3S7 1636 aa18.47■□□□□ 0.55
HDAC4-214ENST00000535493 KDM5BQ9UGL1 1544 aa18.47■□□□□ 0.55
HDAC4-214ENST00000535493 FANCD2Q9BXW9 1451 aa18.46■□□□□ 0.55
HDAC4-214ENST00000535493 POLR3GLQ9BT43 218 aa18.46■□□□□ 0.55
HDAC4-214ENST00000535493 PPP4R2Q9NY27 417 aa18.46■□□□□ 0.55
HDAC4-214ENST00000535493 NCOA2Q15596 1464 aa18.45■□□□□ 0.54
HDAC4-214ENST00000535493 TDRD9Q8NDG6 1382 aaKnown RBP18.45■□□□□ 0.54
HDAC4-214ENST00000535493 PRKRIP1Q9H875 184 aaPredicted RBP18.45■□□□□ 0.54
HDAC4-214ENST00000535493 FMN1Q68DA7 1419 aa18.44■□□□□ 0.54
HDAC4-214ENST00000535493 MYOM3Q5VTT5 1437 aa18.42■□□□□ 0.54
HDAC4-214ENST00000535493 POLA1P09884 1462 aaPredicted RBP18.42■□□□□ 0.54
HDAC4-214ENST00000535493 SNAPC4Q5SXM2 1469 aa18.42■□□□□ 0.54
HDAC4-214ENST00000535493 MPHOSPH9Q99550 1183 aa18.42■□□□□ 0.54
HDAC4-214ENST00000535493 NBPF8Q3BBV2 869 aa18.41■□□□□ 0.54
HDAC4-214ENST00000535493 NESP48681 1621 aa18.4■□□□□ 0.54
HDAC4-214ENST00000535493 NBR1Q14596 966 aa18.4■□□□□ 0.54
HDAC4-214ENST00000535493 DENND4BO75064 1496 aaPredicted RBP18.39■□□□□ 0.53
HDAC4-214ENST00000535493 EFCAB5A4FU69 1503 aa18.37■□□□□ 0.53
HDAC4-214ENST00000535493 CNTLNQ9NXG0 1405 aa18.36■□□□□ 0.53
HDAC4-214ENST00000535493 KDM6BO15054 1643 aa18.35■□□□□ 0.53
HDAC4-214ENST00000535493 PAK3O75914 559 aaPredicted RBP18.35■□□□□ 0.53
HDAC4-214ENST00000535493 ZNF326Q5BKZ1 582 aaKnown RBP18.35■□□□□ 0.53
HDAC4-214ENST00000535493 PRDM2Q13029 1718 aa18.35■□□□□ 0.53
HDAC4-214ENST00000535493 CCDC7Q96M83 1385 aa18.35■□□□□ 0.53
HDAC4-214ENST00000535493 ABCA10Q8WWZ4 1543 aa18.35■□□□□ 0.53
HDAC4-214ENST00000535493 TOPBP1Q92547 1522 aa18.34■□□□□ 0.53
HDAC4-214ENST00000535493 LRRIQ1Q96JM4 1722 aa18.33■□□□□ 0.52
HDAC4-214ENST00000535493 KIF7Q2M1P5 1343 aa18.32■□□□□ 0.52
HDAC4-214ENST00000535493 MAGI3Q5TCQ9 1506 aa18.31■□□□□ 0.52
HDAC4-214ENST00000535493 AKNAQ7Z591 1439 aa18.31■□□□□ 0.52
HDAC4-214ENST00000535493 ZBED9Q6R2W3 1325 aa18.31■□□□□ 0.52
HDAC4-214ENST00000535493 DEKP35659 375 aaKnown RBP18.3■□□□□ 0.52
HDAC4-214ENST00000535493 ZNF644Q9H582 1327 aaPredicted RBP18.29■□□□□ 0.52
HDAC4-214ENST00000535493 GRIN2BQ13224 1484 aa18.28■□□□□ 0.52
HDAC4-214ENST00000535493 NCOA1Q15788 1441 aa18.27■□□□□ 0.52
HDAC4-214ENST00000535493 SLC4A1APQ9BWU0 796 aaKnown RBP18.27■□□□□ 0.51
HDAC4-214ENST00000535493 DNMBPQ6XZF7 1577 aa18.26■□□□□ 0.51
HDAC4-214ENST00000535493 CTTNBP2Q8WZ74 1663 aa18.26■□□□□ 0.51
HDAC4-214ENST00000535493 ERICH6BQ5W0A0 696 aa18.26■□□□□ 0.51
HDAC4-214ENST00000535493 NOP58Q9Y2X3 529 aaKnown RBP18.24■□□□□ 0.51
HDAC4-214ENST00000535493 SUPT6HQ7KZ85 1726 aaKnown RBP18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms