RNA–Protein interactions for RNA: ENST00000527823.5

USP48-212, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 554 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-212ENST00000527823 POLA2Q14181 598 aa15.69■□□□□ 0.1
USP48-212ENST00000527823 RSF1Q96T23 1441 aaPredicted RBP15.68■□□□□ 0.1
USP48-212ENST00000527823 TOPBP1Q92547 1522 aa15.66■□□□□ 0.1
USP48-212ENST00000527823 ARAP1Q96P48 1450 aa15.64■□□□□ 0.09
USP48-212ENST00000527823 DSG3P32926 999 aa15.62■□□□□ 0.09
USP48-212ENST00000527823 TARBP1Q13395 1621 aaKnown RBP15.61■□□□□ 0.09
USP48-212ENST00000527823 DNMBPQ6XZF7 1577 aa15.6■□□□□ 0.09
USP48-212ENST00000527823 CCDC88BA6NC98 1476 aa15.55■□□□□ 0.08
USP48-212ENST00000527823 ABCC8Q09428 1581 aa15.51■□□□□ 0.07
USP48-212ENST00000527823 CYB5RLQ6IPT4 315 aa15.51■□□□□ 0.07
USP48-212ENST00000527823 AQRO60306 1485 aaKnown RBP eCLIP15.5■□□□□ 0.071e-10■■■□□ 15
USP48-212ENST00000527823 CLASP1Q7Z460 1538 aa15.49■□□□□ 0.07
USP48-212ENST00000527823 POLA1P09884 1462 aaPredicted RBP15.48■□□□□ 0.07
USP48-212ENST00000527823 MKRN4PQ13434 485 aaPredicted RBP15.46■□□□□ 0.07
USP48-212ENST00000527823 WDR97A6NE52 1622 aa15.42■□□□□ 0.06
USP48-212ENST00000527823 FBLN2P98095 1184 aa15.41■□□□□ 0.06
USP48-212ENST00000527823 SNAPC4Q5SXM2 1469 aa15.4■□□□□ 0.06
USP48-212ENST00000527823 RAD54L2Q9Y4B4 1467 aa15.4■□□□□ 0.06
USP48-212ENST00000527823 SYNJ1O43426 1573 aa15.39■□□□□ 0.05
USP48-212ENST00000527823 FKBP8Q14318 412 aa15.38■□□□□ 0.05
USP48-212ENST00000527823 ZBTB12Q9Y330 459 aaPredicted RBP15.36■□□□□ 0.05
USP48-212ENST00000527823 PBRM1Q86U86 1689 aa15.35■□□□□ 0.05
USP48-212ENST00000527823 MAGI1Q96QZ7 1491 aaPredicted RBP15.33■□□□□ 0.05
USP48-212ENST00000527823 FGD5Q6ZNL6 1462 aa15.33■□□□□ 0.04
USP48-212ENST00000527823 TDRD9Q8NDG6 1382 aaKnown RBP15.31■□□□□ 0.04
USP48-212ENST00000527823 SOGA1O94964 1423 aa15.28■□□□□ 0.04
USP48-212ENST00000527823 CUX1P39880 1505 aa15.27■□□□□ 0.04
USP48-212ENST00000527823 SYNJ2O15056 1496 aa15.27■□□□□ 0.04
USP48-212ENST00000527823 GRIN2BQ13224 1484 aa15.26■□□□□ 0.03
USP48-212ENST00000527823 GAPVD1Q14C86 1478 aa15.25■□□□□ 0.03
USP48-212ENST00000527823 ABCA5Q8WWZ7 1642 aa15.24■□□□□ 0.03
USP48-212ENST00000527823 ERCC6L2Q5T890 1561 aa15.21■□□□□ 0.03
USP48-212ENST00000527823 SPDYE4A6NLX3 237 aa15.18■□□□□ 0.02
USP48-212ENST00000527823 CHMP7Q8WUX9 453 aaPredicted RBP15.17■□□□□ 0.02
USP48-212ENST00000527823 KIF13AQ9H1H9 1805 aa15.17■□□□□ 0.02
USP48-212ENST00000527823 ADAMTS12P58397 1594 aa15.15■□□□□ 0.02
USP48-212ENST00000527823 CEP170Q5SW79 1584 aa15.13■□□□□ 0.01
USP48-212ENST00000527823 SHROOM2Q13796 1616 aa15.13■□□□□ 0.01
USP48-212ENST00000527823 ABCA10Q8WWZ4 1543 aa15.12■□□□□ 0.01
USP48-212ENST00000527823 GRIN2AQ12879 1464 aa15.11■□□□□ 0.01
USP48-212ENST00000527823 NUP160Q12769 1436 aa15.07■□□□□ 0
USP48-212ENST00000527823 ZNF692Q9BU19 519 aaPredicted RBP15□□□□□ -0.01
USP48-212ENST00000527823 BIVM-ERCC5R4GMW8 1640 aa14.99□□□□□ -0.01
USP48-212ENST00000527823 SPDYE2BA6NHP3 402 aa14.99□□□□□ -0.01
USP48-212ENST00000527823 SPDYE6P0CI01 402 aa14.99□□□□□ -0.01
USP48-212ENST00000527823 SPDYE2Q495Y8 402 aa14.99□□□□□ -0.01
USP48-212ENST00000527823 DIP2BQ9P265 1576 aa14.96□□□□□ -0.01
USP48-212ENST00000527823 RUSC2Q8N2Y8 1516 aa14.96□□□□□ -0.02
USP48-212ENST00000527823 TOP2BQ02880 1626 aa14.95□□□□□ -0.02
USP48-212ENST00000527823 FHAD1B1AJZ9 1412 aa14.93□□□□□ -0.02
USP48-212ENST00000527823 ERICH3Q5RHP9 1530 aa14.93□□□□□ -0.02
USP48-212ENST00000527823 MAPKBP1O60336 1514 aa14.92□□□□□ -0.02
USP48-212ENST00000527823 ADCY10Q96PN6 1610 aa14.91□□□□□ -0.02
USP48-212ENST00000527823 WRNQ14191 1432 aaPredicted RBP eCLIP14.91□□□□□ -0.02
USP48-212ENST00000527823 PROM2Q8N271 834 aa14.9□□□□□ -0.02
USP48-212ENST00000527823 SSUH2Q9Y2M2 353 aa14.9□□□□□ -0.02
USP48-212ENST00000527823 ABCC10Q5T3U5 1492 aa14.89□□□□□ -0.03
USP48-212ENST00000527823 KDM6BO15054 1643 aa14.88□□□□□ -0.03
USP48-212ENST00000527823 PRG4Q92954 1404 aaPredicted RBP14.88□□□□□ -0.03
USP48-212ENST00000527823 TSPOAP1O95153 1857 aa14.84□□□□□ -0.03
USP48-212ENST00000527823 RBM42Q9BTD8 480 aaKnown RBP14.82□□□□□ -0.04
USP48-212ENST00000527823 PPRC1Q5VV67 1664 aaKnown RBP14.77□□□□□ -0.04
USP48-212ENST00000527823 KDM4FA0A1W2PPD8 638 aa14.76□□□□□ -0.05
USP48-212ENST00000527823 FAM69CQ0P6D2 419 aa14.76□□□□□ -0.05
USP48-212ENST00000527823 JPH4Q96JJ6 628 aa14.73□□□□□ -0.05
USP48-212ENST00000527823 FBXO3Q9UK99 471 aa14.72□□□□□ -0.05
USP48-212ENST00000527823 CUL7Q14999 1698 aa14.7□□□□□ -0.06
USP48-212ENST00000527823 AKT1S1Q96B36 256 aa14.69□□□□□ -0.06
USP48-212ENST00000527823 KIAA0586Q9BVV6 1533 aa14.67□□□□□ -0.06
USP48-212ENST00000527823 ILDR1Q86SU0 546 aaPredicted RBP14.67□□□□□ -0.06
USP48-212ENST00000527823 ADGRL1O94910 1474 aa14.67□□□□□ -0.06
USP48-212ENST00000527823 GLI2P10070 1586 aa14.64□□□□□ -0.07
USP48-212ENST00000527823 HECW2Q9P2P5 1572 aa14.64□□□□□ -0.07
USP48-212ENST00000527823 NPM1P06748 294 aaKnown RBP eCLIP14.63□□□□□ -0.07
USP48-212ENST00000527823 ABCC2Q92887 1545 aa14.62□□□□□ -0.07
USP48-212ENST00000527823 MAP3K4Q9Y6R4 1608 aa14.62□□□□□ -0.07
USP48-212ENST00000527823 REM2Q8IYK8 340 aaPredicted RBP14.6□□□□□ -0.07
USP48-212ENST00000527823 ASXL2Q76L83 1435 aa14.58□□□□□ -0.07
USP48-212ENST00000527823 COL17A1Q9UMD9 1497 aaPredicted RBP14.57□□□□□ -0.08
USP48-212ENST00000527823 IQGAP2Q13576 1575 aa14.56□□□□□ -0.08
USP48-212ENST00000527823 SUPT5HO00267 1087 aaKnown RBP14.56□□□□□ -0.08
USP48-212ENST00000527823 PLB1Q6P1J6 1458 aa14.56□□□□□ -0.08
USP48-212ENST00000527823 VASPP50552 380 aaPredicted RBP14.55□□□□□ -0.08
USP48-212ENST00000527823 UHRF1BP1LA0JNW5 1464 aa14.55□□□□□ -0.08
USP48-212ENST00000527823 ZCCHC11Q5TAX3 1644 aaKnown RBP14.55□□□□□ -0.08
USP48-212ENST00000527823 STAG3Q9UJ98 1225 aa14.54□□□□□ -0.08
USP48-212ENST00000527823 PTPRGP23470 1445 aa14.54□□□□□ -0.08
USP48-212ENST00000527823 IGF1RP08069 1367 aa14.53□□□□□ -0.08
USP48-212ENST00000527823 EPRSP07814 1512 aaKnown RBP14.52□□□□□ -0.08
USP48-212ENST00000527823 KIF27Q86VH2 1401 aa14.52□□□□□ -0.08
USP48-212ENST00000527823 TNIKQ9UKE5 1360 aa14.51□□□□□ -0.09
USP48-212ENST00000527823 SPDYE1Q8NFV5 336 aaPredicted RBP14.51□□□□□ -0.09
USP48-212ENST00000527823 CLEC11AQ9Y240 323 aa14.51□□□□□ -0.09
USP48-212ENST00000527823 DISP1Q96F81 1524 aa14.51□□□□□ -0.09
USP48-212ENST00000527823 KDM5BQ9UGL1 1544 aa14.5□□□□□ -0.09
USP48-212ENST00000527823 CARMIL2Q6F5E8 1435 aa14.49□□□□□ -0.09
USP48-212ENST00000527823 TEX14Q8IWB6 1497 aa14.48□□□□□ -0.09
USP48-212ENST00000527823 KIAA0556O60303 1618 aa14.48□□□□□ -0.09
USP48-212ENST00000527823 UACAQ9BZF9 1416 aa14.47□□□□□ -0.09
USP48-212ENST00000527823 KIF21BO75037 1637 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms