RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 LRRC9Q6ZRR7 1453 aa31.22■■■□□ 2.59
VPS28-205ENST00000526204 LAMC3Q9Y6N6 1575 aa31.22■■■□□ 2.59
VPS28-205ENST00000526204 CUL7Q14999 1698 aa31.2■■■□□ 2.59
VPS28-205ENST00000526204 EFCAB5A4FU69 1503 aa31.17■■■□□ 2.58
VPS28-205ENST00000526204 CFAP43Q8NDM7 1665 aa31.1■■■□□ 2.57
VPS28-205ENST00000526204 PCF11O94913 1555 aaKnown RBP31.09■■■□□ 2.57
VPS28-205ENST00000526204 AQRO60306 1485 aaKnown RBP eCLIP31.08■■■□□ 2.577e-10■■■■□ 24.3
VPS28-205ENST00000526204 FYCO1Q9BQS8 1478 aa31.08■■■□□ 2.57
VPS28-205ENST00000526204 MIER1Q8N108 512 aa31.07■■■□□ 2.56
VPS28-205ENST00000526204 URB2Q14146 1524 aaKnown RBP31.07■■■□□ 2.56
VPS28-205ENST00000526204 ITGAEP38570 1179 aa31.06■■■□□ 2.56
VPS28-205ENST00000526204 PHLDB1Q86UU1 1377 aa31.05■■■□□ 2.56
VPS28-205ENST00000526204 P3H3Q8IVL6 736 aa31.04■■■□□ 2.56
VPS28-205ENST00000526204 FHOD3Q2V2M9 1422 aa31.03■■■□□ 2.56
VPS28-205ENST00000526204 CASKIN1Q8WXD9 1431 aa31.03■■■□□ 2.56
VPS28-205ENST00000526204 PDS5BQ9NTI5 1447 aa31.03■■■□□ 2.56
VPS28-205ENST00000526204 WDR97A6NE52 1622 aa31.02■■■□□ 2.56
VPS28-205ENST00000526204 RAB3GAP2Q9H2M9 1393 aa31.02■■■□□ 2.56
VPS28-205ENST00000526204 CTTNBP2Q8WZ74 1663 aa31.02■■■□□ 2.56
VPS28-205ENST00000526204 SETD5Q9C0A6 1442 aa30.99■■■□□ 2.55
VPS28-205ENST00000526204 GTF3C3Q9Y5Q9 886 aa30.97■■■□□ 2.55
VPS28-205ENST00000526204 FMN1Q68DA7 1419 aa30.97■■■□□ 2.55
VPS28-205ENST00000526204 PELP1Q8IZL8 1130 aaKnown RBP30.97■■■□□ 2.55
VPS28-205ENST00000526204 ABCA5Q8WWZ7 1642 aa30.95■■■□□ 2.54
VPS28-205ENST00000526204 ATP1B4Q9UN42 357 aaPredicted RBP30.94■■■□□ 2.54
VPS28-205ENST00000526204 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.92■■■□□ 2.543e-6■■□□□ 12.6
VPS28-205ENST00000526204 GAPVD1Q14C86 1478 aa30.91■■■□□ 2.54
VPS28-205ENST00000526204 TDRD9Q8NDG6 1382 aaKnown RBP30.89■■■□□ 2.54
VPS28-205ENST00000526204 FAM50AQ14320 339 aaKnown RBP30.89■■■□□ 2.54
VPS28-205ENST00000526204 MAPKBP1O60336 1514 aa30.85■■■□□ 2.53
VPS28-205ENST00000526204 YTHDC1Q96MU7 727 aaKnown RBP30.85■■■□□ 2.53
VPS28-205ENST00000526204 SNAPC4Q5SXM2 1469 aa30.82■■■□□ 2.52
VPS28-205ENST00000526204 SAMD9Q5K651 1589 aa30.81■■■□□ 2.52
VPS28-205ENST00000526204 KIF21AQ7Z4S6 1674 aa30.73■■■□□ 2.51
VPS28-205ENST00000526204 MTUS2Q5JR59 1369 aa30.72■■■□□ 2.51
VPS28-205ENST00000526204 FGD6Q6ZV73 1430 aa30.71■■■□□ 2.51
VPS28-205ENST00000526204 TARBP1Q13395 1621 aaKnown RBP30.71■■■□□ 2.51
VPS28-205ENST00000526204 THOC2Q8NI27 1593 aaKnown RBP30.71■■■□□ 2.51
VPS28-205ENST00000526204 TIMELESSQ9UNS1 1208 aa30.7■■■□□ 2.5
VPS28-205ENST00000526204 GRIN2BQ13224 1484 aa30.67■■■□□ 2.5
VPS28-205ENST00000526204 EHBP1L1Q8N3D4 1523 aa30.56■■■□□ 2.48
VPS28-205ENST00000526204 MYOM3Q5VTT5 1437 aa30.56■■■□□ 2.48
VPS28-205ENST00000526204 NCOA2Q15596 1464 aa30.55■■■□□ 2.48
VPS28-205ENST00000526204 SIN3AQ96ST3 1273 aa30.53■■■□□ 2.48
VPS28-205ENST00000526204 LRRIQ1Q96JM4 1722 aa30.53■■■□□ 2.48
VPS28-205ENST00000526204 CCDC18Q5T9S5 1454 aa30.53■■■□□ 2.48
VPS28-205ENST00000526204 HFM1A2PYH4 1435 aa30.52■■■□□ 2.48
VPS28-205ENST00000526204 MRC2Q9UBG0 1479 aa30.52■■■□□ 2.48
VPS28-205ENST00000526204 SUPT6HQ7KZ85 1726 aaKnown RBP30.52■■■□□ 2.48
VPS28-205ENST00000526204 PBRM1Q86U86 1689 aa30.51■■■□□ 2.48
VPS28-205ENST00000526204 IQGAP2Q13576 1575 aa30.46■■■□□ 2.47
VPS28-205ENST00000526204 ADAMTS12P58397 1594 aa30.46■■■□□ 2.47
VPS28-205ENST00000526204 ARHGEF11O15085 1522 aa30.44■■■□□ 2.46
VPS28-205ENST00000526204 PTPRKQ15262 1439 aa30.44■■■□□ 2.46
VPS28-205ENST00000526204 UGGT2Q9NYU1 1516 aa30.44■■■□□ 2.46
VPS28-205ENST00000526204 UACAQ9BZF9 1416 aa30.44■■■□□ 2.46
VPS28-205ENST00000526204 HECW1Q76N89 1606 aa30.43■■■□□ 2.46
VPS28-205ENST00000526204 PTPN23Q9H3S7 1636 aa30.41■■■□□ 2.46
VPS28-205ENST00000526204 PPP1R15AO75807 674 aaPredicted RBP30.4■■■□□ 2.46
VPS28-205ENST00000526204 NAIPQ13075 1403 aa30.38■■■□□ 2.45
VPS28-205ENST00000526204 IFT140Q96RY7 1462 aa30.36■■■□□ 2.45
VPS28-205ENST00000526204 MAGI3Q5TCQ9 1506 aa30.35■■■□□ 2.45
VPS28-205ENST00000526204 TCOF1Q13428 1488 aaKnown RBP30.34■■■□□ 2.45
VPS28-205ENST00000526204 EPRSP07814 1512 aaKnown RBP30.33■■■□□ 2.45
VPS28-205ENST00000526204 TONSLQ96HA7 1378 aa30.3■■■□□ 2.44
VPS28-205ENST00000526204 WDR62O43379 1518 aa30.27■■■□□ 2.44
VPS28-205ENST00000526204 MIA2Q96PC5 1412 aa30.27■■■□□ 2.44
VPS28-205ENST00000526204 AKNAQ7Z591 1439 aa30.24■■■□□ 2.43
VPS28-205ENST00000526204 KIAA0586Q9BVV6 1533 aa30.23■■■□□ 2.43
VPS28-205ENST00000526204 ERCC6Q03468 1493 aa30.23■■■□□ 2.43
VPS28-205ENST00000526204 ZNF608Q9ULD9 1512 aaPredicted RBP30.21■■■□□ 2.43
VPS28-205ENST00000526204 DDX10Q13206 875 aaKnown RBP30.2■■■□□ 2.43
VPS28-205ENST00000526204 CDK13Q14004 1512 aaKnown RBP30.18■■■□□ 2.42
VPS28-205ENST00000526204 GCC2Q8IWJ2 1684 aa30.15■■■□□ 2.42
VPS28-205ENST00000526204 RRP7BPQ9NSQ0 103 aa30.12■■■□□ 2.41
VPS28-205ENST00000526204 KIAA0556O60303 1618 aa30.12■■■□□ 2.41
VPS28-205ENST00000526204 DISP1Q96F81 1524 aa30.11■■■□□ 2.41
VPS28-205ENST00000526204 GRIN2AQ12879 1464 aa30.1■■■□□ 2.41
VPS28-205ENST00000526204 CHIC2Q9UKJ5 165 aa30.09■■■□□ 2.41
VPS28-205ENST00000526204 EIF4G3O43432 1585 aaKnown RBP30.04■■■□□ 2.4
VPS28-205ENST00000526204 CDK11AQ9UQ88 783 aaPredicted RBP30.04■■■□□ 2.4
VPS28-205ENST00000526204 KCNH8Q96L42 1107 aa30.03■■■□□ 2.4
VPS28-205ENST00000526204 NUP153P49790 1475 aaKnown RBP30.02■■■□□ 2.4
VPS28-205ENST00000526204 CCER2I3L3R5 266 aa30.02■■■□□ 2.4
VPS28-205ENST00000526204 ROCK1Q13464 1354 aa30.02■■■□□ 2.4
VPS28-205ENST00000526204 TRIM52Q96A61 297 aa30.01■■■□□ 2.39
VPS28-205ENST00000526204 HIRIP3Q9BW71 556 aaPredicted RBP30.01■■■□□ 2.39
VPS28-205ENST00000526204 MAGI1Q96QZ7 1491 aaPredicted RBP30■■■□□ 2.39
VPS28-205ENST00000526204 KDM5BQ9UGL1 1544 aa30■■■□□ 2.39
VPS28-205ENST00000526204 RAPGEF6Q8TEU7 1601 aa30■■■□□ 2.39
VPS28-205ENST00000526204 ARID3CA6NKF2 412 aa29.99■■■□□ 2.39
VPS28-205ENST00000526204 ANP32CO43423 234 aa29.99■■■□□ 2.39
VPS28-205ENST00000526204 DENND4BO75064 1496 aaPredicted RBP29.97■■■□□ 2.39
VPS28-205ENST00000526204 SUPT16HQ9Y5B9 1047 aaKnown RBP29.96■■■□□ 2.39
VPS28-205ENST00000526204 DAPK1P53355 1430 aa29.96■■■□□ 2.39
VPS28-205ENST00000526204 MPHOSPH9Q99550 1183 aa29.95■■■□□ 2.39
VPS28-205ENST00000526204 KDM6BO15054 1643 aa29.94■■■□□ 2.38
VPS28-205ENST00000526204 SYNJ2O15056 1496 aa29.92■■■□□ 2.38
VPS28-205ENST00000526204 DNMT1P26358 1616 aaKnown RBP29.91■■■□□ 2.38
VPS28-205ENST00000526204 CHMP7Q8WUX9 453 aaPredicted RBP29.9■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms