RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 ZNF777Q9ULD5 760 aaPredicted RBP14.52□□□□□ -0.08
MCF2-209ENST00000520602 FHOD3Q2V2M9 1422 aa14.51□□□□□ -0.09
MCF2-209ENST00000520602 ARAP1Q96P48 1450 aa14.5□□□□□ -0.09
MCF2-209ENST00000520602 CNGB1Q14028 1251 aaPredicted RBP14.48□□□□□ -0.09
MCF2-209ENST00000520602 SIN3AQ96ST3 1273 aa14.48□□□□□ -0.09
MCF2-209ENST00000520602 POLR3GLQ9BT43 218 aa14.48□□□□□ -0.09
MCF2-209ENST00000520602 RRP7BPQ9NSQ0 103 aa14.48□□□□□ -0.09
MCF2-209ENST00000520602 HIRIP3Q9BW71 556 aaPredicted RBP14.47□□□□□ -0.09
MCF2-209ENST00000520602 SCAF1Q9H7N4 1312 aaKnown RBP14.47□□□□□ -0.09
MCF2-209ENST00000520602 CDK11AQ9UQ88 783 aaPredicted RBP14.47□□□□□ -0.09
MCF2-209ENST00000520602 ERICH3Q5RHP9 1530 aa14.46□□□□□ -0.1
MCF2-209ENST00000520602 PELP1Q8IZL8 1130 aaKnown RBP14.46□□□□□ -0.1
MCF2-209ENST00000520602 ARHGAP35Q9NRY4 1499 aa14.44□□□□□ -0.1
MCF2-209ENST00000520602 DDX10Q13206 875 aaKnown RBP14.43□□□□□ -0.1
MCF2-209ENST00000520602 TONSLQ96HA7 1378 aa14.42□□□□□ -0.1
MCF2-209ENST00000520602 ERCC6Q03468 1493 aa14.42□□□□□ -0.1
MCF2-209ENST00000520602 CLSPNQ9HAW4 1339 aa14.41□□□□□ -0.1
MCF2-209ENST00000520602 RAB3GAP2Q9H2M9 1393 aa14.4□□□□□ -0.1
MCF2-209ENST00000520602 ZNF326Q5BKZ1 582 aaKnown RBP14.4□□□□□ -0.1
MCF2-209ENST00000520602 MYT1LQ9UL68 1186 aa14.38□□□□□ -0.11
MCF2-209ENST00000520602 TOPBP1Q92547 1522 aa14.38□□□□□ -0.11
MCF2-209ENST00000520602 POLA1P09884 1462 aaPredicted RBP14.38□□□□□ -0.11
MCF2-209ENST00000520602 BIVM-ERCC5R4GMW8 1640 aa14.38□□□□□ -0.11
MCF2-209ENST00000520602 DHX57Q6P158 1386 aaKnown RBP14.37□□□□□ -0.11
MCF2-209ENST00000520602 FMN1Q68DA7 1419 aa14.36□□□□□ -0.11
MCF2-209ENST00000520602 SETD5Q9C0A6 1442 aa14.36□□□□□ -0.11
MCF2-209ENST00000520602 GAPVD1Q14C86 1478 aa14.36□□□□□ -0.11
MCF2-209ENST00000520602 ANP32CO43423 234 aa14.34□□□□□ -0.11
MCF2-209ENST00000520602 NEFLP07196 543 aa14.33□□□□□ -0.12
MCF2-209ENST00000520602 PHLDB1Q86UU1 1377 aa14.32□□□□□ -0.12
MCF2-209ENST00000520602 AQRO60306 1485 aaKnown RBP eCLIP14.31□□□□□ -0.12
MCF2-209ENST00000520602 DNMBPQ6XZF7 1577 aa14.28□□□□□ -0.12
MCF2-209ENST00000520602 CFDP1Q9UEE9 299 aaPredicted RBP14.27□□□□□ -0.12
MCF2-209ENST00000520602 LRRC9Q6ZRR7 1453 aa14.27□□□□□ -0.13
MCF2-209ENST00000520602 PLEKHD1A6NEE1 506 aa14.26□□□□□ -0.13
MCF2-209ENST00000520602 SLC4A1APQ9BWU0 796 aaKnown RBP14.25□□□□□ -0.13
MCF2-209ENST00000520602 RRBP1Q9P2E9 1410 aaKnown RBP14.24□□□□□ -0.13
MCF2-209ENST00000520602 ABCA10Q8WWZ4 1543 aa14.24□□□□□ -0.13
MCF2-209ENST00000520602 BCANQ96GW7 911 aa14.22□□□□□ -0.13
MCF2-209ENST00000520602 FOXD1Q16676 465 aa14.22□□□□□ -0.13
MCF2-209ENST00000520602 URB2Q14146 1524 aaKnown RBP14.21□□□□□ -0.13
MCF2-209ENST00000520602 TSPY4P0CV99 314 aa14.21□□□□□ -0.13
MCF2-209ENST00000520602 TSPY10P0CW01 314 aa14.21□□□□□ -0.13
MCF2-209ENST00000520602 KCNH8Q96L42 1107 aa14.2□□□□□ -0.14
MCF2-209ENST00000520602 CASKIN1Q8WXD9 1431 aa14.19□□□□□ -0.14
MCF2-209ENST00000520602 LAMC3Q9Y6N6 1575 aa14.17□□□□□ -0.14
MCF2-209ENST00000520602 JPH4Q96JJ6 628 aa14.17□□□□□ -0.14
MCF2-209ENST00000520602 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.17□□□□□ -0.14
MCF2-209ENST00000520602 TIAM1Q13009 1591 aa14.17□□□□□ -0.14
MCF2-209ENST00000520602 PPP1R15AO75807 674 aaPredicted RBP14.15□□□□□ -0.14
MCF2-209ENST00000520602 FGD6Q6ZV73 1430 aa14.15□□□□□ -0.14
MCF2-209ENST00000520602 KDM2AQ9Y2K7 1162 aa14.14□□□□□ -0.15
MCF2-209ENST00000520602 TIMELESSQ9UNS1 1208 aa14.13□□□□□ -0.15
MCF2-209ENST00000520602 EIF4G2P78344 907 aaKnown RBP eCLIP14.13□□□□□ -0.15
MCF2-209ENST00000520602 FYCO1Q9BQS8 1478 aa14.13□□□□□ -0.15
MCF2-209ENST00000520602 MPHOSPH9Q99550 1183 aa14.11□□□□□ -0.15
MCF2-209ENST00000520602 MRC2Q9UBG0 1479 aa14.11□□□□□ -0.15
MCF2-209ENST00000520602 GRIN2BQ13224 1484 aa14.11□□□□□ -0.15
MCF2-209ENST00000520602 PCF11O94913 1555 aaKnown RBP14.1□□□□□ -0.15
MCF2-209ENST00000520602 ZNF644Q9H582 1327 aaPredicted RBP14.1□□□□□ -0.15
MCF2-209ENST00000520602 EFCAB5A4FU69 1503 aa14.1□□□□□ -0.15
MCF2-209ENST00000520602 CARMIL2Q6F5E8 1435 aa14.09□□□□□ -0.15
MCF2-209ENST00000520602 NCOA2Q15596 1464 aa14.09□□□□□ -0.15
MCF2-209ENST00000520602 MYOM3Q5VTT5 1437 aa14.08□□□□□ -0.16
MCF2-209ENST00000520602 HNRNPUQ00839 825 aaKnown RBP eCLIP14.08□□□□□ -0.16
MCF2-209ENST00000520602 CCDC18Q5T9S5 1454 aa14.07□□□□□ -0.16
MCF2-209ENST00000520602 FAM9BQ8IZU0 186 aa14.06□□□□□ -0.16
MCF2-209ENST00000520602 FKBP8Q14318 412 aa14.05□□□□□ -0.16
MCF2-209ENST00000520602 RGL3Q3MIN7 710 aa14.04□□□□□ -0.16
MCF2-209ENST00000520602 CUL7Q14999 1698 aa14.03□□□□□ -0.16
MCF2-209ENST00000520602 L3MBTL2Q969R5 705 aa14.03□□□□□ -0.16
MCF2-209ENST00000520602 ZNF608Q9ULD9 1512 aaPredicted RBP14.03□□□□□ -0.16
MCF2-209ENST00000520602 HSPA5P11021 654 aaKnown RBP14.02□□□□□ -0.16
MCF2-209ENST00000520602 IFT140Q96RY7 1462 aa14.02□□□□□ -0.17
MCF2-209ENST00000520602 PKD2Q13563 968 aa14.01□□□□□ -0.17
MCF2-209ENST00000520602 HNRNPMP52272 730 aaKnown RBP eCLIP14.01□□□□□ -0.17
MCF2-209ENST00000520602 SNAPC4Q5SXM2 1469 aa14.01□□□□□ -0.17
MCF2-209ENST00000520602 MAP3K1Q13233 1512 aa14□□□□□ -0.17
MCF2-209ENST00000520602 MRS2Q9HD23 443 aa13.99□□□□□ -0.17
MCF2-209ENST00000520602 PRDM2Q13029 1718 aa13.97□□□□□ -0.17
MCF2-209ENST00000520602 CDK13Q14004 1512 aaKnown RBP13.97□□□□□ -0.17
MCF2-209ENST00000520602 UACAQ9BZF9 1416 aa13.96□□□□□ -0.17
MCF2-209ENST00000520602 SENP3-EIF4A1A0A087X0R7 540 aa13.96□□□□□ -0.18
MCF2-209ENST00000520602 NPM1P06748 294 aaKnown RBP eCLIP13.95□□□□□ -0.18
MCF2-209ENST00000520602 NUP155O75694 1391 aa13.94□□□□□ -0.18
MCF2-209ENST00000520602 PTPRGP23470 1445 aa13.94□□□□□ -0.18
MCF2-209ENST00000520602 CARD11Q9BXL7 1154 aa13.94□□□□□ -0.18
MCF2-209ENST00000520602 IQGAP2Q13576 1575 aa13.93□□□□□ -0.18
MCF2-209ENST00000520602 EPRSP07814 1512 aaKnown RBP13.93□□□□□ -0.18
MCF2-209ENST00000520602 ANKRD30AQ9BXX3 1397 aa13.93□□□□□ -0.18
MCF2-209ENST00000520602 DCAF11Q8TEB1 546 aa13.93□□□□□ -0.18
MCF2-209ENST00000520602 PRG4Q92954 1404 aaPredicted RBP13.92□□□□□ -0.18
MCF2-209ENST00000520602 HFM1A2PYH4 1435 aa13.92□□□□□ -0.18
MCF2-209ENST00000520602 IRX6P78412 446 aaPredicted RBP13.92□□□□□ -0.18
MCF2-209ENST00000520602 KIAA0586Q9BVV6 1533 aa13.92□□□□□ -0.18
MCF2-209ENST00000520602 EHBP1L1Q8N3D4 1523 aa13.91□□□□□ -0.18
MCF2-209ENST00000520602 KIF21AQ7Z4S6 1674 aa13.91□□□□□ -0.18
MCF2-209ENST00000520602 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.91□□□□□ -0.18
MCF2-209ENST00000520602 CHGAP10645 457 aaKnown RBP13.91□□□□□ -0.18
MCF2-209ENST00000520602 NAIPQ13075 1403 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms