RNA–Protein interactions for RNA: ENST00000512656.1

USP46-208, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 3

Gene USP46, Length 467 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-208ENST00000512656 PRR29P0C7W0 189 aa13.56□□□□□ -0.24
USP46-208ENST00000512656 PRKAR2AP13861 404 aaKnown RBP13.56□□□□□ -0.24
USP46-208ENST00000512656 CADPSQ9ULU8 1353 aa13.55□□□□□ -0.24
USP46-208ENST00000512656 THOC2Q8NI27 1593 aaKnown RBP13.54□□□□□ -0.24
USP46-208ENST00000512656 WIZO95785 1651 aa13.5□□□□□ -0.25
USP46-208ENST00000512656 HAX1O00165 279 aa13.5□□□□□ -0.25
USP46-208ENST00000512656 STAG3Q9UJ98 1225 aa13.5□□□□□ -0.25
USP46-208ENST00000512656 SP7Q8TDD2 431 aaPredicted RBP13.49□□□□□ -0.25
USP46-208ENST00000512656 KIF21AQ7Z4S6 1674 aa13.48□□□□□ -0.25
USP46-208ENST00000512656 MRC2Q9UBG0 1479 aa13.44□□□□□ -0.26
USP46-208ENST00000512656 RSF1Q96T23 1441 aaPredicted RBP13.44□□□□□ -0.26
USP46-208ENST00000512656 CEP164Q9UPV0 1460 aa13.4□□□□□ -0.26
USP46-208ENST00000512656 WDR62O43379 1518 aa13.39□□□□□ -0.27
USP46-208ENST00000512656 CFTRP13569 1480 aa13.38□□□□□ -0.27
USP46-208ENST00000512656 CHADLQ6NUI6 762 aa13.38□□□□□ -0.27
USP46-208ENST00000512656 TOP2AP11388 1531 aaKnown RBP13.38□□□□□ -0.27
USP46-208ENST00000512656 FANCD2Q9BXW9 1451 aa13.37□□□□□ -0.27
USP46-208ENST00000512656 C19orf67A6NJJ6 358 aa13.35□□□□□ -0.27
USP46-208ENST00000512656 PROM2Q8N271 834 aa13.35□□□□□ -0.27
USP46-208ENST00000512656 FARP1Q9Y4F1 1045 aaPredicted RBP13.3□□□□□ -0.28
USP46-208ENST00000512656 EVX2Q03828 476 aa13.29□□□□□ -0.28
USP46-208ENST00000512656 CREBZFQ9NS37 354 aa13.25□□□□□ -0.29
USP46-208ENST00000512656 URB2Q14146 1524 aaKnown RBP13.23□□□□□ -0.29
USP46-208ENST00000512656 CCDC88BA6NC98 1476 aa13.23□□□□□ -0.29
USP46-208ENST00000512656 PRDM2Q13029 1718 aa13.18□□□□□ -0.3
USP46-208ENST00000512656 TRIM41Q8WV44 630 aa13.16□□□□□ -0.3
USP46-208ENST00000512656 CD44P16070 742 aaKnown RBP13.15□□□□□ -0.3
USP46-208ENST00000512656 IFT140Q96RY7 1462 aa13.14□□□□□ -0.31
USP46-208ENST00000512656 ABCC8Q09428 1581 aa13.14□□□□□ -0.31
USP46-208ENST00000512656 CLCN6P51797 869 aa13.13□□□□□ -0.31
USP46-208ENST00000512656 TOPBP1Q92547 1522 aa13.1□□□□□ -0.31
USP46-208ENST00000512656 NPM1P06748 294 aaKnown RBP eCLIP13.08□□□□□ -0.32
USP46-208ENST00000512656 GABBR2O75899 941 aa13.07□□□□□ -0.32
USP46-208ENST00000512656 MNX1P50219 401 aaPredicted RBP13.07□□□□□ -0.32
USP46-208ENST00000512656 ZNF608Q9ULD9 1512 aaPredicted RBP13.07□□□□□ -0.32
USP46-208ENST00000512656 DNMBPQ6XZF7 1577 aa13.07□□□□□ -0.32
USP46-208ENST00000512656 FKBP8Q14318 412 aa13.05□□□□□ -0.32
USP46-208ENST00000512656 ZNF579Q8NAF0 562 aaKnown RBP13.01□□□□□ -0.33
USP46-208ENST00000512656 EIF4G3O43432 1585 aaKnown RBP12.99□□□□□ -0.33
USP46-208ENST00000512656 PAK3O75914 559 aaPredicted RBP12.99□□□□□ -0.33
USP46-208ENST00000512656 PLEKHG5O94827 1062 aa12.99□□□□□ -0.33
USP46-208ENST00000512656 ZRANB1Q9UGI0 708 aa12.98□□□□□ -0.33
USP46-208ENST00000512656 AQRO60306 1485 aaKnown RBP eCLIP12.97□□□□□ -0.33
USP46-208ENST00000512656 POLA1P09884 1462 aaPredicted RBP12.97□□□□□ -0.33
USP46-208ENST00000512656 TARBP1Q13395 1621 aaKnown RBP12.97□□□□□ -0.33
USP46-208ENST00000512656 SOGA1O94964 1423 aa12.95□□□□□ -0.34
USP46-208ENST00000512656 RIMBP3CA6NJZ7 1639 aa12.93□□□□□ -0.34
USP46-208ENST00000512656 RIMBP3BA6NNM3 1639 aa12.93□□□□□ -0.34
USP46-208ENST00000512656 RIMBP3Q9UFD9 1639 aa12.93□□□□□ -0.34
USP46-208ENST00000512656 MIER1Q8N108 512 aa12.92□□□□□ -0.34
USP46-208ENST00000512656 RAD54L2Q9Y4B4 1467 aa12.91□□□□□ -0.34
USP46-208ENST00000512656 ARHGEF11O15085 1522 aa12.91□□□□□ -0.34
USP46-208ENST00000512656 TDRD9Q8NDG6 1382 aaKnown RBP12.91□□□□□ -0.34
USP46-208ENST00000512656 FGD5Q6ZNL6 1462 aa12.9□□□□□ -0.34
USP46-208ENST00000512656 WDR97A6NE52 1622 aa12.89□□□□□ -0.35
USP46-208ENST00000512656 SUPT5HO00267 1087 aaKnown RBP12.88□□□□□ -0.35
USP46-208ENST00000512656 CUX1P39880 1505 aa12.88□□□□□ -0.35
USP46-208ENST00000512656 CHD1O14646 1710 aa12.86□□□□□ -0.35
USP46-208ENST00000512656 CYB5RLQ6IPT4 315 aa12.86□□□□□ -0.35
USP46-208ENST00000512656 FBXO3Q9UK99 471 aa12.86□□□□□ -0.35
USP46-208ENST00000512656 PLCD3Q8N3E9 789 aa12.85□□□□□ -0.35
USP46-208ENST00000512656 CHMP7Q8WUX9 453 aaPredicted RBP12.85□□□□□ -0.35
USP46-208ENST00000512656 ZBTB47Q9UFB7 747 aaPredicted RBP12.85□□□□□ -0.35
USP46-208ENST00000512656 GRIN2BQ13224 1484 aa12.84□□□□□ -0.35
USP46-208ENST00000512656 SNAPC4Q5SXM2 1469 aa12.84□□□□□ -0.35
USP46-208ENST00000512656 MAGI1Q96QZ7 1491 aaPredicted RBP12.84□□□□□ -0.35
USP46-208ENST00000512656 SYNJ2O15056 1496 aa12.78□□□□□ -0.36
USP46-208ENST00000512656 GAPVD1Q14C86 1478 aa12.78□□□□□ -0.36
USP46-208ENST00000512656 SYNJ1O43426 1573 aa12.78□□□□□ -0.36
USP46-208ENST00000512656 DCBLD2Q96PD2 775 aa12.78□□□□□ -0.36
USP46-208ENST00000512656 PHF12Q96QT6 1004 aa12.78□□□□□ -0.36
USP46-208ENST00000512656 ARAP1Q96P48 1450 aa12.78□□□□□ -0.36
USP46-208ENST00000512656 ABCA10Q8WWZ4 1543 aa12.77□□□□□ -0.37
USP46-208ENST00000512656 POTEIP0CG38 1075 aa12.76□□□□□ -0.37
USP46-208ENST00000512656 GALR2O43603 387 aaPredicted RBP12.75□□□□□ -0.37
USP46-208ENST00000512656 WRNQ14191 1432 aaPredicted RBP eCLIP12.75□□□□□ -0.37
USP46-208ENST00000512656 CLASP1Q7Z460 1538 aa12.75□□□□□ -0.37
USP46-208ENST00000512656 TSPYL2Q9H2G4 693 aaPredicted RBP12.74□□□□□ -0.37
USP46-208ENST00000512656 CCDC61Q9Y6R9 512 aa12.73□□□□□ -0.37
USP46-208ENST00000512656 PBRM1Q86U86 1689 aa12.71□□□□□ -0.37
USP46-208ENST00000512656 ABCA5Q8WWZ7 1642 aa12.7□□□□□ -0.38
USP46-208ENST00000512656 RASEFQ8IZ41 740 aa12.69□□□□□ -0.38
USP46-208ENST00000512656 TOP2BQ02880 1626 aa12.68□□□□□ -0.38
USP46-208ENST00000512656 NUBP1P53384 320 aa12.67□□□□□ -0.38
USP46-208ENST00000512656 BIVM-ERCC5R4GMW8 1640 aa12.66□□□□□ -0.38
USP46-208ENST00000512656 GRIN2AQ12879 1464 aa12.65□□□□□ -0.38
USP46-208ENST00000512656 LHX8Q68G74 356 aa12.64□□□□□ -0.39
USP46-208ENST00000512656 KIF12Q96FN5 646 aa12.64□□□□□ -0.39
USP46-208ENST00000512656 MS4A3Q96HJ5 214 aa12.64□□□□□ -0.39
USP46-208ENST00000512656 FHAD1B1AJZ9 1412 aa12.63□□□□□ -0.39
USP46-208ENST00000512656 VASPP50552 380 aaPredicted RBP12.63□□□□□ -0.39
USP46-208ENST00000512656 ADAMTS12P58397 1594 aa12.62□□□□□ -0.39
USP46-208ENST00000512656 ERICH3Q5RHP9 1530 aa12.62□□□□□ -0.39
USP46-208ENST00000512656 NUP160Q12769 1436 aa12.61□□□□□ -0.39
USP46-208ENST00000512656 FAM212AQ96EL1 285 aa12.6□□□□□ -0.39
USP46-208ENST00000512656 SGIP1Q9BQI5 828 aa12.59□□□□□ -0.39
USP46-208ENST00000512656 ASTLQ6HA08 431 aaPredicted RBP12.58□□□□□ -0.4
USP46-208ENST00000512656 CEP170Q5SW79 1584 aa12.56□□□□□ -0.4
USP46-208ENST00000512656 MAP3K13O43283 966 aa12.54□□□□□ -0.4
USP46-208ENST00000512656 ERCC6L2Q5T890 1561 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms