RNA–Protein interactions for RNA: ENST00000511255.1

SMAD1-210, Transcript of SMAD family member 1, humanhuman

TSL 4

Gene SMAD1, Length 539 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD1-210ENST00000511255 PEG3Q9GZU2 1588 aa14.21□□□□□ -0.14
SMAD1-210ENST00000511255 WIZO95785 1651 aa14.14□□□□□ -0.15
SMAD1-210ENST00000511255 FKBP8Q14318 412 aa14.12□□□□□ -0.15
SMAD1-210ENST00000511255 RSF1Q96T23 1441 aaPredicted RBP14.12□□□□□ -0.15
SMAD1-210ENST00000511255 CHADLQ6NUI6 762 aa14.1□□□□□ -0.15
SMAD1-210ENST00000511255 PROM2Q8N271 834 aa14.08□□□□□ -0.16
SMAD1-210ENST00000511255 ERCC6Q03468 1493 aa14.03□□□□□ -0.16
SMAD1-210ENST00000511255 NESP48681 1621 aa14.02□□□□□ -0.16
SMAD1-210ENST00000511255 POTEIP0CG38 1075 aa14□□□□□ -0.17
SMAD1-210ENST00000511255 TOP2AP11388 1531 aaKnown RBP13.99□□□□□ -0.17
SMAD1-210ENST00000511255 LAMC3Q9Y6N6 1575 aa13.95□□□□□ -0.18
SMAD1-210ENST00000511255 PRR29P0C7W0 189 aa13.94□□□□□ -0.18
SMAD1-210ENST00000511255 CADPSQ9ULU8 1353 aa13.93□□□□□ -0.18
SMAD1-210ENST00000511255 PDS5BQ9NTI5 1447 aa13.9□□□□□ -0.19
SMAD1-210ENST00000511255 CD44P16070 742 aaKnown RBP13.85□□□□□ -0.19
SMAD1-210ENST00000511255 STAG3Q9UJ98 1225 aa13.85□□□□□ -0.19
SMAD1-210ENST00000511255 SUPT5HO00267 1087 aaKnown RBP13.84□□□□□ -0.19
SMAD1-210ENST00000511255 KIF21AQ7Z4S6 1674 aa13.83□□□□□ -0.2
SMAD1-210ENST00000511255 CCDC88BA6NC98 1476 aa13.83□□□□□ -0.2
SMAD1-210ENST00000511255 CUX2O14529 1486 aa13.83□□□□□ -0.2
SMAD1-210ENST00000511255 FARP1Q9Y4F1 1045 aaPredicted RBP13.82□□□□□ -0.2
SMAD1-210ENST00000511255 CFTRP13569 1480 aa13.81□□□□□ -0.2
SMAD1-210ENST00000511255 THOC2Q8NI27 1593 aaKnown RBP13.79□□□□□ -0.2
SMAD1-210ENST00000511255 FANCD2Q9BXW9 1451 aa13.78□□□□□ -0.2
SMAD1-210ENST00000511255 CEP164Q9UPV0 1460 aa13.77□□□□□ -0.21
SMAD1-210ENST00000511255 CLCN6P51797 869 aa13.76□□□□□ -0.21
SMAD1-210ENST00000511255 MRC2Q9UBG0 1479 aa13.74□□□□□ -0.21
SMAD1-210ENST00000511255 PLSCR2Q9NRY7 297 aa13.74□□□□□ -0.21
SMAD1-210ENST00000511255 CREBZFQ9NS37 354 aa13.7□□□□□ -0.22
SMAD1-210ENST00000511255 DCBLD2Q96PD2 775 aa13.68□□□□□ -0.22
SMAD1-210ENST00000511255 WDR62O43379 1518 aa13.67□□□□□ -0.22
SMAD1-210ENST00000511255 PRDM2Q13029 1718 aa13.67□□□□□ -0.22
SMAD1-210ENST00000511255 ZNF579Q8NAF0 562 aaKnown RBP13.63□□□□□ -0.23
SMAD1-210ENST00000511255 FBXO3Q9UK99 471 aa13.62□□□□□ -0.23
SMAD1-210ENST00000511255 URB2Q14146 1524 aaKnown RBP13.62□□□□□ -0.23
SMAD1-210ENST00000511255 MNX1P50219 401 aaPredicted RBP13.57□□□□□ -0.24
SMAD1-210ENST00000511255 OTUD5Q96G74 571 aa13.57□□□□□ -0.24
SMAD1-210ENST00000511255 ZRANB1Q9UGI0 708 aa13.57□□□□□ -0.24
SMAD1-210ENST00000511255 MIER1Q8N108 512 aa13.55□□□□□ -0.24
SMAD1-210ENST00000511255 TOPBP1Q92547 1522 aa13.54□□□□□ -0.24
SMAD1-210ENST00000511255 POTEB2H3BUK9 544 aa13.54□□□□□ -0.24
SMAD1-210ENST00000511255 GALR2O43603 387 aaPredicted RBP13.53□□□□□ -0.24
SMAD1-210ENST00000511255 ABCC8Q09428 1581 aa13.52□□□□□ -0.25
SMAD1-210ENST00000511255 DNMBPQ6XZF7 1577 aa13.51□□□□□ -0.25
SMAD1-210ENST00000511255 VASPP50552 380 aaPredicted RBP13.49□□□□□ -0.25
SMAD1-210ENST00000511255 PLCD3Q8N3E9 789 aa13.48□□□□□ -0.25
SMAD1-210ENST00000511255 IFT140Q96RY7 1462 aa13.48□□□□□ -0.25
SMAD1-210ENST00000511255 DNAJC5Q9H3Z4 198 aa13.47□□□□□ -0.25
SMAD1-210ENST00000511255 POLA1P09884 1462 aaPredicted RBP13.42□□□□□ -0.26
SMAD1-210ENST00000511255 ZNF608Q9ULD9 1512 aaPredicted RBP13.42□□□□□ -0.26
SMAD1-210ENST00000511255 CUX1P39880 1505 aa13.41□□□□□ -0.26
SMAD1-210ENST00000511255 POTEMA6NI47 508 aa13.4□□□□□ -0.26
SMAD1-210ENST00000511255 PLEKHG5O94827 1062 aa13.4□□□□□ -0.26
SMAD1-210ENST00000511255 FGD5Q6ZNL6 1462 aa13.4□□□□□ -0.26
SMAD1-210ENST00000511255 RAD54L2Q9Y4B4 1467 aa13.39□□□□□ -0.27
SMAD1-210ENST00000511255 SOGA1O94964 1423 aa13.39□□□□□ -0.27
SMAD1-210ENST00000511255 NPM1P06748 294 aaKnown RBP eCLIP13.37□□□□□ -0.27
SMAD1-210ENST00000511255 PELP1Q8IZL8 1130 aaKnown RBP13.37□□□□□ -0.27
SMAD1-210ENST00000511255 TARBP1Q13395 1621 aaKnown RBP13.36□□□□□ -0.27
SMAD1-210ENST00000511255 IFNLR1Q8IU57 520 aaPredicted RBP13.36□□□□□ -0.27
SMAD1-210ENST00000511255 AQRO60306 1485 aaKnown RBP eCLIP13.36□□□□□ -0.27
SMAD1-210ENST00000511255 PHF12Q96QT6 1004 aa13.35□□□□□ -0.27
SMAD1-210ENST00000511255 EIF4G3O43432 1585 aaKnown RBP13.35□□□□□ -0.27
SMAD1-210ENST00000511255 WRNQ14191 1432 aaPredicted RBP eCLIP13.34□□□□□ -0.27
SMAD1-210ENST00000511255 POTEGQ6S5H5 508 aa13.34□□□□□ -0.27
SMAD1-210ENST00000511255 TDRD9Q8NDG6 1382 aaKnown RBP13.33□□□□□ -0.27
SMAD1-210ENST00000511255 ZBTB47Q9UFB7 747 aaPredicted RBP13.3□□□□□ -0.28
SMAD1-210ENST00000511255 NUBP1P53384 320 aa13.29□□□□□ -0.28
SMAD1-210ENST00000511255 SYNJ1O43426 1573 aa13.28□□□□□ -0.28
SMAD1-210ENST00000511255 TOP2BQ02880 1626 aa13.28□□□□□ -0.28
SMAD1-210ENST00000511255 PAK3O75914 559 aaPredicted RBP13.26□□□□□ -0.29
SMAD1-210ENST00000511255 RASEFQ8IZ41 740 aa13.26□□□□□ -0.29
SMAD1-210ENST00000511255 KLHL34Q8N239 644 aa13.26□□□□□ -0.29
SMAD1-210ENST00000511255 BIVM-ERCC5R4GMW8 1640 aa13.26□□□□□ -0.29
SMAD1-210ENST00000511255 POTEJP0CG39 1038 aa13.25□□□□□ -0.29
SMAD1-210ENST00000511255 ABCA10Q8WWZ4 1543 aa13.24□□□□□ -0.29
SMAD1-210ENST00000511255 WDR97A6NE52 1622 aa13.24□□□□□ -0.29
SMAD1-210ENST00000511255 GRIN2BQ13224 1484 aa13.23□□□□□ -0.29
SMAD1-210ENST00000511255 GAPVD1Q14C86 1478 aa13.23□□□□□ -0.29
SMAD1-210ENST00000511255 SNAPC4Q5SXM2 1469 aa13.23□□□□□ -0.29
SMAD1-210ENST00000511255 ASTLQ6HA08 431 aaPredicted RBP13.2□□□□□ -0.3
SMAD1-210ENST00000511255 CHMP7Q8WUX9 453 aaPredicted RBP13.2□□□□□ -0.3
SMAD1-210ENST00000511255 TSPYL2Q9H2G4 693 aaPredicted RBP13.2□□□□□ -0.3
SMAD1-210ENST00000511255 PCDH10Q9P2E7 1040 aa13.2□□□□□ -0.3
SMAD1-210ENST00000511255 MAGI1Q96QZ7 1491 aaPredicted RBP13.18□□□□□ -0.3
SMAD1-210ENST00000511255 ABCA5Q8WWZ7 1642 aa13.18□□□□□ -0.3
SMAD1-210ENST00000511255 METRNQ9UJH8 293 aa13.18□□□□□ -0.3
SMAD1-210ENST00000511255 CHD1O14646 1710 aa13.18□□□□□ -0.3
SMAD1-210ENST00000511255 ATMINO43313 823 aaPredicted RBP13.17□□□□□ -0.3
SMAD1-210ENST00000511255 PBRM1Q86U86 1689 aa13.17□□□□□ -0.3
SMAD1-210ENST00000511255 LCE2DQ5TA82 110 aaPredicted RBP13.15□□□□□ -0.3
SMAD1-210ENST00000511255 SPOCK2Q92563 424 aa13.15□□□□□ -0.3
SMAD1-210ENST00000511255 MS4A3Q96HJ5 214 aa13.15□□□□□ -0.3
SMAD1-210ENST00000511255 C7P10643 843 aa13.14□□□□□ -0.31
SMAD1-210ENST00000511255 CCDC61Q9Y6R9 512 aa13.14□□□□□ -0.31
SMAD1-210ENST00000511255 SYNJ2O15056 1496 aa13.14□□□□□ -0.31
SMAD1-210ENST00000511255 SLC39A7Q92504 469 aa13.13□□□□□ -0.31
SMAD1-210ENST00000511255 TRIM41Q8WV44 630 aa13.11□□□□□ -0.31
SMAD1-210ENST00000511255 ERICH3Q5RHP9 1530 aa13.08□□□□□ -0.31
SMAD1-210ENST00000511255 FAM212AQ96EL1 285 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms