RNA–Protein interactions for RNA: ENST00000511255.1

SMAD1-210, Transcript of SMAD family member 1, humanhuman

TSL 4

Gene SMAD1, Length 539 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD1-210ENST00000511255 AEBP2Q6ZN18 517 aaPredicted RBP27.36■■□□□ 1.97
SMAD1-210ENST00000511255 CHIC1Q5VXU3 224 aa25.43■■□□□ 1.66
SMAD1-210ENST00000511255 SENP3Q9H4L4 574 aaPredicted RBP23.32■■□□□ 1.32
SMAD1-210ENST00000511255 PHF23Q9BUL5 403 aaPredicted RBP23■■□□□ 1.27
SMAD1-210ENST00000511255 FOXD1Q16676 465 aa21.89■■□□□ 1.09
SMAD1-210ENST00000511255 POTEDQ86YR6 584 aa21.2■□□□□ 0.98
SMAD1-210ENST00000511255 MSH5O43196 834 aa20.62■□□□□ 0.89
SMAD1-210ENST00000511255 PLPPR3Q6T4P5 718 aa20.28■□□□□ 0.84
SMAD1-210ENST00000511255 PIAS4Q8N2W9 510 aaPredicted RBP20.23■□□□□ 0.83
SMAD1-210ENST00000511255 PPP6R1Q9UPN7 881 aa20.06■□□□□ 0.8
SMAD1-210ENST00000511255 ADRA2BP18089 450 aa19.92■□□□□ 0.78
SMAD1-210ENST00000511255 NISCHQ9Y2I1 1504 aa18.54■□□□□ 0.56
SMAD1-210ENST00000511255 MAPK8IP2Q13387 824 aaPredicted RBP18.51■□□□□ 0.55
SMAD1-210ENST00000511255 DMRT2Q9Y5R5 561 aa18.44■□□□□ 0.54
SMAD1-210ENST00000511255 SCAF1Q9H7N4 1312 aaKnown RBP18.13■□□□□ 0.49
SMAD1-210ENST00000511255 CACNB1Q02641 598 aaPredicted RBP18.06■□□□□ 0.48
SMAD1-210ENST00000511255 PPP4R3CPQ6ZMV5 832 aa17.88■□□□□ 0.45
SMAD1-210ENST00000511255 DCAF8L1A6NGE4 600 aa17.64■□□□□ 0.41
SMAD1-210ENST00000511255 RNF39Q9H2S5 420 aa17.6■□□□□ 0.41
SMAD1-210ENST00000511255 HOXD11P31277 338 aaPredicted RBP17.55■□□□□ 0.4
SMAD1-210ENST00000511255 CNKSR2Q8WXI2 1034 aa17.39■□□□□ 0.37
SMAD1-210ENST00000511255 KCNA4P22459 653 aa17.3■□□□□ 0.36
SMAD1-210ENST00000511255 NCBP3Q53F19 620 aaKnown RBP17.28■□□□□ 0.36
SMAD1-210ENST00000511255 C1QBPQ07021 282 aaKnown RBP17.27■□□□□ 0.36
SMAD1-210ENST00000511255 RNF216Q9NWF9 866 aaPredicted RBP17.23■□□□□ 0.35
SMAD1-210ENST00000511255 NPM3O75607 178 aaKnown RBP17.13■□□□□ 0.33
SMAD1-210ENST00000511255 DNAJC5BQ9UF47 199 aa17.04■□□□□ 0.32
SMAD1-210ENST00000511255 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.65■□□□□ 0.26
SMAD1-210ENST00000511255 POTEHQ6S545 545 aa16.47■□□□□ 0.23
SMAD1-210ENST00000511255 CCDC180Q9P1Z9 1646 aa16.46■□□□□ 0.23
SMAD1-210ENST00000511255 SLC4A1APQ9BWU0 796 aaKnown RBP16.38■□□□□ 0.21
SMAD1-210ENST00000511255 U3KPZ7 1027 aaPredicted RBP16.3■□□□□ 0.2
SMAD1-210ENST00000511255 DSG3P32926 999 aa16.29■□□□□ 0.2
SMAD1-210ENST00000511255 SLC4A2P04920 1241 aa16.26■□□□□ 0.19
SMAD1-210ENST00000511255 ABCC9O60706 1549 aa16.25■□□□□ 0.19
SMAD1-210ENST00000511255 SPINK5Q9NQ38 1064 aaPredicted RBP16.25■□□□□ 0.19
SMAD1-210ENST00000511255 CAPN15O75808 1086 aa16.17■□□□□ 0.18
SMAD1-210ENST00000511255 ZBTB22O15209 634 aa15.96■□□□□ 0.15
SMAD1-210ENST00000511255 FOXD4L1Q9NU39 408 aa15.9■□□□□ 0.14
SMAD1-210ENST00000511255 TRHP20396 242 aaPredicted RBP15.79■□□□□ 0.12
SMAD1-210ENST00000511255 ABCB7O75027 752 aa15.78■□□□□ 0.12
SMAD1-210ENST00000511255 MYCNP04198 464 aaPredicted RBP15.76■□□□□ 0.11
SMAD1-210ENST00000511255 CSRNP3Q8WYN3 585 aa15.7■□□□□ 0.1
SMAD1-210ENST00000511255 EHMT2Q96KQ7 1210 aa15.7■□□□□ 0.1
SMAD1-210ENST00000511255 ZNF219Q9P2Y4 722 aaPredicted RBP15.7■□□□□ 0.1
SMAD1-210ENST00000511255 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.66■□□□□ 0.1
SMAD1-210ENST00000511255 HNRNPUL2Q1KMD3 747 aaKnown RBP15.66■□□□□ 0.1
SMAD1-210ENST00000511255 DCAF8L2P0C7V8 631 aa15.65■□□□□ 0.1
SMAD1-210ENST00000511255 APLP2Q06481 763 aa15.64■□□□□ 0.09
SMAD1-210ENST00000511255 SAMD1Q6SPF0 538 aaPredicted RBP15.62■□□□□ 0.09
SMAD1-210ENST00000511255 RB1CC1Q8TDY2 1594 aa15.57■□□□□ 0.08
SMAD1-210ENST00000511255 NACADO15069 1562 aa15.51■□□□□ 0.07
SMAD1-210ENST00000511255 ATF5Q9Y2D1 282 aaPredicted RBP15.48■□□□□ 0.07
SMAD1-210ENST00000511255 RBM42Q9BTD8 480 aaKnown RBP15.46■□□□□ 0.07
SMAD1-210ENST00000511255 ZCCHC6Q5VYS8 1495 aaKnown RBP15.43■□□□□ 0.06
SMAD1-210ENST00000511255 CHRDL2Q6WN34 429 aa15.41■□□□□ 0.06
SMAD1-210ENST00000511255 ATXN8OSP0DMR3 200 aa15.36■□□□□ 0.05
SMAD1-210ENST00000511255 MYO15BQ96JP2 1530 aa15.36■□□□□ 0.05
SMAD1-210ENST00000511255 DCAF1Q9Y4B6 1507 aa15.29■□□□□ 0.04
SMAD1-210ENST00000511255 POLA2Q14181 598 aa15.27■□□□□ 0.04
SMAD1-210ENST00000511255 PABPN1Q86U42 306 aaKnown RBP eCLIP15.2■□□□□ 0.02
SMAD1-210ENST00000511255 UNC13AQ9UPW8 1703 aa15.15■□□□□ 0.02
SMAD1-210ENST00000511255 SP7Q8TDD2 431 aaPredicted RBP15.15■□□□□ 0.02
SMAD1-210ENST00000511255 SCRIBQ14160 1630 aa15.1■□□□□ 0.01
SMAD1-210ENST00000511255 BICRAQ9NZM4 1560 aa15.05■□□□□ -0
SMAD1-210ENST00000511255 AKT1S1Q96B36 256 aa15.03■□□□□ -0
SMAD1-210ENST00000511255 PIP4P2Q8N4L2 257 aa14.94□□□□□ -0.02
SMAD1-210ENST00000511255 REM2Q8IYK8 340 aaPredicted RBP14.92□□□□□ -0.02
SMAD1-210ENST00000511255 SHROOM4Q9ULL8 1493 aa14.89□□□□□ -0.03
SMAD1-210ENST00000511255 ZBTB12Q9Y330 459 aaPredicted RBP14.81□□□□□ -0.04
SMAD1-210ENST00000511255 HAX1O00165 279 aa14.8□□□□□ -0.04
SMAD1-210ENST00000511255 MKRN4PQ13434 485 aaPredicted RBP14.78□□□□□ -0.04
SMAD1-210ENST00000511255 FXR2P51116 673 aaKnown RBP eCLIP14.77□□□□□ -0.05
SMAD1-210ENST00000511255 OSCARQ8IYS5 282 aa14.77□□□□□ -0.05
SMAD1-210ENST00000511255 PITPNM1O00562 1244 aa14.76□□□□□ -0.05
SMAD1-210ENST00000511255 EIF4G1Q04637 1599 aaKnown RBP14.69□□□□□ -0.06
SMAD1-210ENST00000511255 FBLN2P98095 1184 aa14.68□□□□□ -0.06
SMAD1-210ENST00000511255 EVX2Q03828 476 aa14.68□□□□□ -0.06
SMAD1-210ENST00000511255 CC2D2AQ9P2K1 1620 aa14.65□□□□□ -0.06
SMAD1-210ENST00000511255 CECR2Q9BXF3 1484 aa14.59□□□□□ -0.07
SMAD1-210ENST00000511255 SPDYE2BA6NHP3 402 aa14.44□□□□□ -0.1
SMAD1-210ENST00000511255 SPDYE6P0CI01 402 aa14.44□□□□□ -0.1
SMAD1-210ENST00000511255 SPDYE2Q495Y8 402 aa14.44□□□□□ -0.1
SMAD1-210ENST00000511255 SMARCA4P51532 1647 aa14.39□□□□□ -0.11
SMAD1-210ENST00000511255 BAZ1AQ9NRL2 1556 aaPredicted RBP14.38□□□□□ -0.11
SMAD1-210ENST00000511255 ZNF692Q9BU19 519 aaPredicted RBP14.37□□□□□ -0.11
SMAD1-210ENST00000511255 PRKAR2AP13861 404 aaKnown RBP14.36□□□□□ -0.11
SMAD1-210ENST00000511255 SSUH2Q9Y2M2 353 aa14.35□□□□□ -0.11
SMAD1-210ENST00000511255 ATAD2BQ9ULI0 1458 aa14.34□□□□□ -0.11
SMAD1-210ENST00000511255 SMARCA2P51531 1590 aa14.32□□□□□ -0.12
SMAD1-210ENST00000511255 C19orf67A6NJJ6 358 aa14.32□□□□□ -0.12
SMAD1-210ENST00000511255 NCAPD3P42695 1498 aa14.31□□□□□ -0.12
SMAD1-210ENST00000511255 MROH2BQ7Z745 1585 aa14.3□□□□□ -0.12
SMAD1-210ENST00000511255 SPDYE4A6NLX3 237 aa14.28□□□□□ -0.12
SMAD1-210ENST00000511255 CLEC11AQ9Y240 323 aa14.26□□□□□ -0.13
SMAD1-210ENST00000511255 GABBR2O75899 941 aa14.25□□□□□ -0.13
SMAD1-210ENST00000511255 BAZ1BQ9UIG0 1483 aaKnown RBP14.25□□□□□ -0.13
SMAD1-210ENST00000511255 SPDYE1Q8NFV5 336 aaPredicted RBP14.24□□□□□ -0.13
SMAD1-210ENST00000511255 HMGXB3Q12766 1538 aa14.24□□□□□ -0.13
SMAD1-210ENST00000511255 LHX8Q68G74 356 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms