RNA–Protein interactions for RNA: ENST00000506924.1

CLCN3-205, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 4

Gene CLCN3, Length 567 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-205ENST00000506924 PRR29P0C7W0 189 aa17.21■□□□□ 0.35
CLCN3-205ENST00000506924 IFNLR1Q8IU57 520 aaPredicted RBP17.21■□□□□ 0.35
CLCN3-205ENST00000506924 MIER1Q8N108 512 aa17.2■□□□□ 0.34
CLCN3-205ENST00000506924 TOP2AP11388 1531 aaKnown RBP17.17■□□□□ 0.34
CLCN3-205ENST00000506924 NESP48681 1621 aa17.17■□□□□ 0.34
CLCN3-205ENST00000506924 ZBTB47Q9UFB7 747 aaPredicted RBP17.16■□□□□ 0.34
CLCN3-205ENST00000506924 SUPT5HO00267 1087 aaKnown RBP17.1■□□□□ 0.33
CLCN3-205ENST00000506924 KLHL34Q8N239 644 aa17.07■□□□□ 0.32
CLCN3-205ENST00000506924 ERCC6Q03468 1493 aa17.05■□□□□ 0.32
CLCN3-205ENST00000506924 SPOCK2Q92563 424 aa17.04■□□□□ 0.32
CLCN3-205ENST00000506924 RTN4Q9NQC3 1192 aaKnown RBP17.04■□□□□ 0.32
CLCN3-205ENST00000506924 CREBZFQ9NS37 354 aa17.04■□□□□ 0.32
CLCN3-205ENST00000506924 LAMC3Q9Y6N6 1575 aa17.02■□□□□ 0.32
CLCN3-205ENST00000506924 CADPSQ9ULU8 1353 aa17.02■□□□□ 0.31
CLCN3-205ENST00000506924 CCDC88BA6NC98 1476 aa17.01■□□□□ 0.31
CLCN3-205ENST00000506924 CHRDL2Q6WN34 429 aa16.99■□□□□ 0.31
CLCN3-205ENST00000506924 FXR2P51116 673 aaKnown RBP eCLIP16.96■□□□□ 0.31
CLCN3-205ENST00000506924 KIF21AQ7Z4S6 1674 aa16.94■□□□□ 0.3
CLCN3-205ENST00000506924 PDS5BQ9NTI5 1447 aa16.93■□□□□ 0.3
CLCN3-205ENST00000506924 MNX1P50219 401 aaPredicted RBP16.91■□□□□ 0.3
CLCN3-205ENST00000506924 CFTRP13569 1480 aa16.91■□□□□ 0.3
CLCN3-205ENST00000506924 NPM1P06748 294 aaKnown RBP eCLIP16.85■□□□□ 0.29
CLCN3-205ENST00000506924 FANCD2Q9BXW9 1451 aa16.85■□□□□ 0.29
CLCN3-205ENST00000506924 THOC2Q8NI27 1593 aaKnown RBP16.82■□□□□ 0.28
CLCN3-205ENST00000506924 PRKAR2AP13861 404 aaKnown RBP16.82■□□□□ 0.28
CLCN3-205ENST00000506924 CEP164Q9UPV0 1460 aa16.8■□□□□ 0.28
CLCN3-205ENST00000506924 PIP4P2Q8N4L2 257 aa16.8■□□□□ 0.28
CLCN3-205ENST00000506924 NUBP1P53384 320 aa16.79■□□□□ 0.28
CLCN3-205ENST00000506924 CHADLQ6NUI6 762 aa16.78■□□□□ 0.28
CLCN3-205ENST00000506924 PRDM2Q13029 1718 aa16.78■□□□□ 0.28
CLCN3-205ENST00000506924 CUX2O14529 1486 aa16.77■□□□□ 0.28
CLCN3-205ENST00000506924 MRC2Q9UBG0 1479 aa16.77■□□□□ 0.28
CLCN3-205ENST00000506924 POTEHQ6S545 545 aa16.76■□□□□ 0.27
CLCN3-205ENST00000506924 FARP1Q9Y4F1 1045 aaPredicted RBP16.76■□□□□ 0.27
CLCN3-205ENST00000506924 PKD2Q13563 968 aa16.73■□□□□ 0.27
CLCN3-205ENST00000506924 GSE1Q14687 1217 aa16.73■□□□□ 0.27
CLCN3-205ENST00000506924 TRIM41Q8WV44 630 aa16.71■□□□□ 0.27
CLCN3-205ENST00000506924 WDR62O43379 1518 aa16.69■□□□□ 0.26
CLCN3-205ENST00000506924 URB2Q14146 1524 aaKnown RBP16.69■□□□□ 0.26
CLCN3-205ENST00000506924 FAM212AQ96EL1 285 aa16.68■□□□□ 0.26
CLCN3-205ENST00000506924 CIZ1Q9ULV3 898 aaPredicted RBP16.64■□□□□ 0.25
CLCN3-205ENST00000506924 RASEFQ8IZ41 740 aa16.6■□□□□ 0.25
CLCN3-205ENST00000506924 DCAF8Q5TAQ9 597 aa16.59■□□□□ 0.25
CLCN3-205ENST00000506924 ECM2O94769 699 aaPredicted RBP16.58■□□□□ 0.24
CLCN3-205ENST00000506924 TOPBP1Q92547 1522 aa16.58■□□□□ 0.24
CLCN3-205ENST00000506924 DNMBPQ6XZF7 1577 aa16.54■□□□□ 0.24
CLCN3-205ENST00000506924 CHRM1P11229 460 aaPredicted RBP16.51■□□□□ 0.23
CLCN3-205ENST00000506924 ABCC8Q09428 1581 aa16.51■□□□□ 0.23
CLCN3-205ENST00000506924 PAK3O75914 559 aaPredicted RBP16.49■□□□□ 0.23
CLCN3-205ENST00000506924 CUX1P39880 1505 aa16.48■□□□□ 0.23
CLCN3-205ENST00000506924 POLA1P09884 1462 aaPredicted RBP16.44■□□□□ 0.22
CLCN3-205ENST00000506924 IFT140Q96RY7 1462 aa16.43■□□□□ 0.22
CLCN3-205ENST00000506924 ZNF608Q9ULD9 1512 aaPredicted RBP16.43■□□□□ 0.22
CLCN3-205ENST00000506924 FGD5Q6ZNL6 1462 aa16.42■□□□□ 0.22
CLCN3-205ENST00000506924 RAD54L2Q9Y4B4 1467 aa16.42■□□□□ 0.22
CLCN3-205ENST00000506924 TSPYL2Q9H2G4 693 aaPredicted RBP16.42■□□□□ 0.22
CLCN3-205ENST00000506924 SOGA1O94964 1423 aa16.39■□□□□ 0.21
CLCN3-205ENST00000506924 CCDC61Q9Y6R9 512 aa16.39■□□□□ 0.21
CLCN3-205ENST00000506924 WRNQ14191 1432 aaPredicted RBP eCLIP16.38■□□□□ 0.21
CLCN3-205ENST00000506924 RGL2O15211 777 aa16.38■□□□□ 0.21
CLCN3-205ENST00000506924 TARBP1Q13395 1621 aaKnown RBP16.37■□□□□ 0.21
CLCN3-205ENST00000506924 SYNJ1O43426 1573 aa16.37■□□□□ 0.21
CLCN3-205ENST00000506924 C19orf67A6NJJ6 358 aa16.36■□□□□ 0.21
CLCN3-205ENST00000506924 CD44P16070 742 aaKnown RBP16.36■□□□□ 0.21
CLCN3-205ENST00000506924 TAOK2Q9UL54 1235 aa16.36■□□□□ 0.21
CLCN3-205ENST00000506924 AQRO60306 1485 aaKnown RBP eCLIP16.35■□□□□ 0.21
CLCN3-205ENST00000506924 TDRD9Q8NDG6 1382 aaKnown RBP16.34■□□□□ 0.21
CLCN3-205ENST00000506924 EIF4G3O43432 1585 aaKnown RBP16.33■□□□□ 0.2
CLCN3-205ENST00000506924 TOP2BQ02880 1626 aa16.32■□□□□ 0.2
CLCN3-205ENST00000506924 BIVM-ERCC5R4GMW8 1640 aa16.31■□□□□ 0.2
CLCN3-205ENST00000506924 PYGBP11216 843 aa16.31■□□□□ 0.2
CLCN3-205ENST00000506924 SGIP1Q9BQI5 828 aa16.3■□□□□ 0.2
CLCN3-205ENST00000506924 RIOK3O14730 519 aaKnown RBP16.29■□□□□ 0.2
CLCN3-205ENST00000506924 RNF25Q96BH1 459 aaPredicted RBP16.29■□□□□ 0.2
CLCN3-205ENST00000506924 ZRANB1Q9UGI0 708 aa16.29■□□□□ 0.2
CLCN3-205ENST00000506924 DNAJC5Q9H3Z4 198 aa16.27■□□□□ 0.2
CLCN3-205ENST00000506924 ZNF467Q7Z7K2 595 aaPredicted RBP16.26■□□□□ 0.19
CLCN3-205ENST00000506924 WDR97A6NE52 1622 aa16.24■□□□□ 0.19
CLCN3-205ENST00000506924 ZNF579Q8NAF0 562 aaKnown RBP16.24■□□□□ 0.19
CLCN3-205ENST00000506924 VGFO15240 615 aaPredicted RBP16.23■□□□□ 0.19
CLCN3-205ENST00000506924 ABCA10Q8WWZ4 1543 aa16.22■□□□□ 0.19
CLCN3-205ENST00000506924 KIF12Q96FN5 646 aa16.2■□□□□ 0.18
CLCN3-205ENST00000506924 GAPVD1Q14C86 1478 aa16.18■□□□□ 0.18
CLCN3-205ENST00000506924 CLCN6P51797 869 aa16.18■□□□□ 0.18
CLCN3-205ENST00000506924 SNAPC4Q5SXM2 1469 aa16.17■□□□□ 0.18
CLCN3-205ENST00000506924 HAX1O00165 279 aa16.17■□□□□ 0.18
CLCN3-205ENST00000506924 GRIN2BQ13224 1484 aa16.16■□□□□ 0.18
CLCN3-205ENST00000506924 ABCA5Q8WWZ7 1642 aa16.16■□□□□ 0.18
CLCN3-205ENST00000506924 PBRM1Q86U86 1689 aa16.15■□□□□ 0.18
CLCN3-205ENST00000506924 HS6ST3Q8IZP7 471 aa16.14■□□□□ 0.17
CLCN3-205ENST00000506924 PCDHB13Q9Y5F0 798 aa16.14■□□□□ 0.17
CLCN3-205ENST00000506924 CHD1O14646 1710 aa16.14■□□□□ 0.17
CLCN3-205ENST00000506924 MAP3K13O43283 966 aa16.13■□□□□ 0.17
CLCN3-205ENST00000506924 CHMP7Q8WUX9 453 aaPredicted RBP16.1■□□□□ 0.17
CLCN3-205ENST00000506924 BBXQ8WY36 941 aaPredicted RBP16.1■□□□□ 0.17
CLCN3-205ENST00000506924 PHF12Q96QT6 1004 aa16.1■□□□□ 0.17
CLCN3-205ENST00000506924 CHGAP10645 457 aaKnown RBP16.09■□□□□ 0.17
CLCN3-205ENST00000506924 PDAP1Q13442 181 aaKnown RBP16.09■□□□□ 0.17
CLCN3-205ENST00000506924 MAGI1Q96QZ7 1491 aaPredicted RBP16.09■□□□□ 0.17
CLCN3-205ENST00000506924 IFNL1Q8IU54 200 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms