RNA–Protein interactions for RNA: ENST00000506924.1

CLCN3-205, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 4

Gene CLCN3, Length 567 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-205ENST00000506924 AEBP2Q6ZN18 517 aaPredicted RBP31.55■■■□□ 2.64
CLCN3-205ENST00000506924 CHIC1Q5VXU3 224 aa31.15■■■□□ 2.58
CLCN3-205ENST00000506924 PHF23Q9BUL5 403 aaPredicted RBP27.33■■□□□ 1.97
CLCN3-205ENST00000506924 SENP3Q9H4L4 574 aaPredicted RBP26.89■■□□□ 1.9
CLCN3-205ENST00000506924 PLPPR3Q6T4P5 718 aa25.44■■□□□ 1.66
CLCN3-205ENST00000506924 FOXD1Q16676 465 aa24.81■■□□□ 1.56
CLCN3-205ENST00000506924 PPP6R1Q9UPN7 881 aa23.99■■□□□ 1.43
CLCN3-205ENST00000506924 ADRA2BP18089 450 aa23.97■■□□□ 1.43
CLCN3-205ENST00000506924 PIAS4Q8N2W9 510 aaPredicted RBP23.46■■□□□ 1.35
CLCN3-205ENST00000506924 MSH5O43196 834 aa22.93■■□□□ 1.26
CLCN3-205ENST00000506924 NISCHQ9Y2I1 1504 aa22.76■■□□□ 1.23
CLCN3-205ENST00000506924 PPP4R3CPQ6ZMV5 832 aa22.36■■□□□ 1.17
CLCN3-205ENST00000506924 SCAF1Q9H7N4 1312 aaKnown RBP22.14■■□□□ 1.14
CLCN3-205ENST00000506924 KCNA4P22459 653 aa22.03■■□□□ 1.12
CLCN3-205ENST00000506924 NCBP3Q53F19 620 aaKnown RBP21.94■■□□□ 1.1
CLCN3-205ENST00000506924 CNKSR2Q8WXI2 1034 aa21.76■■□□□ 1.07
CLCN3-205ENST00000506924 MAPK8IP2Q13387 824 aaPredicted RBP21.64■■□□□ 1.05
CLCN3-205ENST00000506924 NPM3O75607 178 aaKnown RBP21.51■■□□□ 1.03
CLCN3-205ENST00000506924 DMRT2Q9Y5R5 561 aa21.48■■□□□ 1.03
CLCN3-205ENST00000506924 POTEDQ86YR6 584 aa21.34■■□□□ 1.01
CLCN3-205ENST00000506924 RNF216Q9NWF9 866 aaPredicted RBP21.3■■□□□ 1
CLCN3-205ENST00000506924 HOXD11P31277 338 aaPredicted RBP21.16■□□□□ 0.98
CLCN3-205ENST00000506924 DNAJC5BQ9UF47 199 aa21.12■□□□□ 0.97
CLCN3-205ENST00000506924 SLC4A1APQ9BWU0 796 aaKnown RBP21.07■□□□□ 0.96
CLCN3-205ENST00000506924 EHMT2Q96KQ7 1210 aa20.59■□□□□ 0.89
CLCN3-205ENST00000506924 DCAF8L1A6NGE4 600 aa20.37■□□□□ 0.85
CLCN3-205ENST00000506924 CSRNP3Q8WYN3 585 aa20.36■□□□□ 0.85
CLCN3-205ENST00000506924 FOXD4L1Q9NU39 408 aa20.32■□□□□ 0.84
CLCN3-205ENST00000506924 ZBTB22O15209 634 aa20.25■□□□□ 0.83
CLCN3-205ENST00000506924 SLC4A2P04920 1241 aa20.24■□□□□ 0.83
CLCN3-205ENST00000506924 CCDC180Q9P1Z9 1646 aa20.16■□□□□ 0.82
CLCN3-205ENST00000506924 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.06■□□□□ 0.8
CLCN3-205ENST00000506924 MYCNP04198 464 aaPredicted RBP19.95■□□□□ 0.78
CLCN3-205ENST00000506924 ABCC9O60706 1549 aa19.81■□□□□ 0.76
CLCN3-205ENST00000506924 U3KPZ7 1027 aaPredicted RBP19.77■□□□□ 0.76
CLCN3-205ENST00000506924 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.76■□□□□ 0.75
CLCN3-205ENST00000506924 HNRNPUL2Q1KMD3 747 aaKnown RBP19.76■□□□□ 0.75
CLCN3-205ENST00000506924 ATXN8OSP0DMR3 200 aa19.7■□□□□ 0.74
CLCN3-205ENST00000506924 SAMD1Q6SPF0 538 aaPredicted RBP19.65■□□□□ 0.74
CLCN3-205ENST00000506924 RNF39Q9H2S5 420 aa19.62■□□□□ 0.73
CLCN3-205ENST00000506924 APLP2Q06481 763 aa19.52■□□□□ 0.72
CLCN3-205ENST00000506924 C1QBPQ07021 282 aaKnown RBP19.46■□□□□ 0.71
CLCN3-205ENST00000506924 ATF5Q9Y2D1 282 aaPredicted RBP19.23■□□□□ 0.67
CLCN3-205ENST00000506924 DCAF8L2P0C7V8 631 aa19.17■□□□□ 0.66
CLCN3-205ENST00000506924 ZNF219Q9P2Y4 722 aaPredicted RBP19.13■□□□□ 0.65
CLCN3-205ENST00000506924 SPINK5Q9NQ38 1064 aaPredicted RBP19.07■□□□□ 0.64
CLCN3-205ENST00000506924 CAPN15O75808 1086 aa19.02■□□□□ 0.64
CLCN3-205ENST00000506924 RB1CC1Q8TDY2 1594 aa18.98■□□□□ 0.63
CLCN3-205ENST00000506924 TRHP20396 242 aaPredicted RBP18.96■□□□□ 0.63
CLCN3-205ENST00000506924 NACADO15069 1562 aa18.95■□□□□ 0.62
CLCN3-205ENST00000506924 ZCCHC6Q5VYS8 1495 aaKnown RBP18.95■□□□□ 0.62
CLCN3-205ENST00000506924 CACNB1Q02641 598 aaPredicted RBP18.93■□□□□ 0.62
CLCN3-205ENST00000506924 MYO15BQ96JP2 1530 aa18.79■□□□□ 0.6
CLCN3-205ENST00000506924 DCAF1Q9Y4B6 1507 aa18.74■□□□□ 0.59
CLCN3-205ENST00000506924 POLA2Q14181 598 aa18.74■□□□□ 0.59
CLCN3-205ENST00000506924 DSG3P32926 999 aa18.72■□□□□ 0.59
CLCN3-205ENST00000506924 ZBTB12Q9Y330 459 aaPredicted RBP18.63■□□□□ 0.57
CLCN3-205ENST00000506924 ABCB7O75027 752 aa18.61■□□□□ 0.57
CLCN3-205ENST00000506924 UNC13AQ9UPW8 1703 aa18.6■□□□□ 0.57
CLCN3-205ENST00000506924 PABPN1Q86U42 306 aaKnown RBP eCLIP18.58■□□□□ 0.56
CLCN3-205ENST00000506924 FBLN2P98095 1184 aa18.57■□□□□ 0.56
CLCN3-205ENST00000506924 SCRIBQ14160 1630 aa18.52■□□□□ 0.56
CLCN3-205ENST00000506924 MKRN4PQ13434 485 aaPredicted RBP18.46■□□□□ 0.55
CLCN3-205ENST00000506924 BICRAQ9NZM4 1560 aa18.44■□□□□ 0.54
CLCN3-205ENST00000506924 FKBP8Q14318 412 aa18.37■□□□□ 0.53
CLCN3-205ENST00000506924 SPDYE4A6NLX3 237 aa18.2■□□□□ 0.5
CLCN3-205ENST00000506924 SHROOM4Q9ULL8 1493 aa18.17■□□□□ 0.5
CLCN3-205ENST00000506924 SPDYE2BA6NHP3 402 aa18.1■□□□□ 0.49
CLCN3-205ENST00000506924 SPDYE6P0CI01 402 aa18.1■□□□□ 0.49
CLCN3-205ENST00000506924 SPDYE2Q495Y8 402 aa18.1■□□□□ 0.49
CLCN3-205ENST00000506924 OSCARQ8IYS5 282 aa18.08■□□□□ 0.48
CLCN3-205ENST00000506924 PROM2Q8N271 834 aa18.03■□□□□ 0.48
CLCN3-205ENST00000506924 ZNF692Q9BU19 519 aaPredicted RBP17.97■□□□□ 0.47
CLCN3-205ENST00000506924 SSUH2Q9Y2M2 353 aa17.96■□□□□ 0.47
CLCN3-205ENST00000506924 EIF4G1Q04637 1599 aaKnown RBP17.95■□□□□ 0.46
CLCN3-205ENST00000506924 RBM42Q9BTD8 480 aaKnown RBP17.94■□□□□ 0.46
CLCN3-205ENST00000506924 CC2D2AQ9P2K1 1620 aa17.88■□□□□ 0.45
CLCN3-205ENST00000506924 FBXO3Q9UK99 471 aa17.82■□□□□ 0.44
CLCN3-205ENST00000506924 CECR2Q9BXF3 1484 aa17.79■□□□□ 0.44
CLCN3-205ENST00000506924 AKT1S1Q96B36 256 aa17.73■□□□□ 0.43
CLCN3-205ENST00000506924 SMARCA4P51532 1647 aa17.65■□□□□ 0.42
CLCN3-205ENST00000506924 STAG3Q9UJ98 1225 aa17.62■□□□□ 0.41
CLCN3-205ENST00000506924 BAZ1AQ9NRL2 1556 aaPredicted RBP17.62■□□□□ 0.41
CLCN3-205ENST00000506924 MROH2BQ7Z745 1585 aa17.58■□□□□ 0.41
CLCN3-205ENST00000506924 ATAD2BQ9ULI0 1458 aa17.55■□□□□ 0.4
CLCN3-205ENST00000506924 NCAPD3P42695 1498 aa17.5■□□□□ 0.39
CLCN3-205ENST00000506924 SMARCA2P51531 1590 aa17.49■□□□□ 0.39
CLCN3-205ENST00000506924 SPDYE1Q8NFV5 336 aaPredicted RBP17.49■□□□□ 0.39
CLCN3-205ENST00000506924 VASPP50552 380 aaPredicted RBP17.48■□□□□ 0.39
CLCN3-205ENST00000506924 REM2Q8IYK8 340 aaPredicted RBP17.48■□□□□ 0.39
CLCN3-205ENST00000506924 PEG3Q9GZU2 1588 aa17.42■□□□□ 0.38
CLCN3-205ENST00000506924 BAZ1BQ9UIG0 1483 aaKnown RBP17.42■□□□□ 0.38
CLCN3-205ENST00000506924 WIZO95785 1651 aa17.42■□□□□ 0.38
CLCN3-205ENST00000506924 HMGXB3Q12766 1538 aa17.4■□□□□ 0.38
CLCN3-205ENST00000506924 RSF1Q96T23 1441 aaPredicted RBP17.38■□□□□ 0.37
CLCN3-205ENST00000506924 AMER1Q5JTC6 1135 aaPredicted RBP17.26■□□□□ 0.35
CLCN3-205ENST00000506924 CLEC11AQ9Y240 323 aa17.26■□□□□ 0.35
CLCN3-205ENST00000506924 PITPNM1O00562 1244 aa17.25■□□□□ 0.35
CLCN3-205ENST00000506924 PLEKHG5O94827 1062 aa17.22■□□□□ 0.35
CLCN3-205ENST00000506924 PLCD3Q8N3E9 789 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms