RNA–Protein interactions for RNA: ENST00000506516.5

GYPB-206, Transcript of glycophorin B (MNS blood group), humanhuman

TSL 1 (best)

Gene GYPB, Length 473 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GYPB-206ENST00000506516 RNF39Q9H2S5 420 aa12.35□□□□□ -0.43
GYPB-206ENST00000506516 TRIM41Q8WV44 630 aa12.34□□□□□ -0.43
GYPB-206ENST00000506516 SNAPC4Q5SXM2 1469 aa12.32□□□□□ -0.44
GYPB-206ENST00000506516 MAGI1Q96QZ7 1491 aaPredicted RBP12.32□□□□□ -0.44
GYPB-206ENST00000506516 ABCA5Q8WWZ7 1642 aa12.29□□□□□ -0.44
GYPB-206ENST00000506516 KIF27Q86VH2 1401 aa12.28□□□□□ -0.44
GYPB-206ENST00000506516 CACNB1Q02641 598 aaPredicted RBP12.27□□□□□ -0.45
GYPB-206ENST00000506516 SYNJ2O15056 1496 aa12.27□□□□□ -0.45
GYPB-206ENST00000506516 ERICH3Q5RHP9 1530 aa12.25□□□□□ -0.45
GYPB-206ENST00000506516 PBRM1Q86U86 1689 aa12.25□□□□□ -0.45
GYPB-206ENST00000506516 FHAD1B1AJZ9 1412 aa12.24□□□□□ -0.45
GYPB-206ENST00000506516 SLC4A2P04920 1241 aa12.24□□□□□ -0.45
GYPB-206ENST00000506516 IGF1RP08069 1367 aa12.22□□□□□ -0.45
GYPB-206ENST00000506516 CHD1O14646 1710 aa12.21□□□□□ -0.45
GYPB-206ENST00000506516 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.21□□□□□ -0.45
GYPB-206ENST00000506516 C1QBPQ07021 282 aaKnown RBP12.19□□□□□ -0.46
GYPB-206ENST00000506516 GRIN2AQ12879 1464 aa12.19□□□□□ -0.46
GYPB-206ENST00000506516 ADAMTS12P58397 1594 aa12.18□□□□□ -0.46
GYPB-206ENST00000506516 CARMIL1Q5VZK9 1371 aa12.17□□□□□ -0.46
GYPB-206ENST00000506516 NUP160Q12769 1436 aa12.12□□□□□ -0.47
GYPB-206ENST00000506516 RUSC2Q8N2Y8 1516 aa12.12□□□□□ -0.47
GYPB-206ENST00000506516 CLASP1Q7Z460 1538 aa12.11□□□□□ -0.47
GYPB-206ENST00000506516 CUL7Q14999 1698 aa12.11□□□□□ -0.47
GYPB-206ENST00000506516 ARHGEF11O15085 1522 aa12.11□□□□□ -0.47
GYPB-206ENST00000506516 CYB5RLQ6IPT4 315 aa12.1□□□□□ -0.47
GYPB-206ENST00000506516 JPH4Q96JJ6 628 aa12.1□□□□□ -0.47
GYPB-206ENST00000506516 CEP170Q5SW79 1584 aa12.09□□□□□ -0.47
GYPB-206ENST00000506516 RIMBP3CA6NJZ7 1639 aa12.08□□□□□ -0.48
GYPB-206ENST00000506516 RIMBP3BA6NNM3 1639 aa12.08□□□□□ -0.48
GYPB-206ENST00000506516 RIMBP3Q9UFD9 1639 aa12.08□□□□□ -0.48
GYPB-206ENST00000506516 RAPGEF2Q9Y4G8 1499 aa12.08□□□□□ -0.48
GYPB-206ENST00000506516 EEA1Q15075 1411 aa12.06□□□□□ -0.48
GYPB-206ENST00000506516 MYCNP04198 464 aaPredicted RBP12.06□□□□□ -0.48
GYPB-206ENST00000506516 FAM9AQ8IZU1 332 aaPredicted RBP12.05□□□□□ -0.48
GYPB-206ENST00000506516 KIAA0586Q9BVV6 1533 aa12.05□□□□□ -0.48
GYPB-206ENST00000506516 PRG4Q92954 1404 aaPredicted RBP12.02□□□□□ -0.49
GYPB-206ENST00000506516 PRXQ9BXM0 1461 aa12.01□□□□□ -0.49
GYPB-206ENST00000506516 ARAP1Q96P48 1450 aa12□□□□□ -0.49
GYPB-206ENST00000506516 U3KPZ7 1027 aaPredicted RBP11.99□□□□□ -0.49
GYPB-206ENST00000506516 SHROOM2Q13796 1616 aa11.98□□□□□ -0.49
GYPB-206ENST00000506516 CARMIL2Q6F5E8 1435 aa11.96□□□□□ -0.49
GYPB-206ENST00000506516 ERCC6L2Q5T890 1561 aa11.95□□□□□ -0.5
GYPB-206ENST00000506516 IQGAP2Q13576 1575 aa11.94□□□□□ -0.5
GYPB-206ENST00000506516 TTBK1Q5TCY1 1321 aaPredicted RBP11.91□□□□□ -0.5
GYPB-206ENST00000506516 NPM1P06748 294 aaKnown RBP eCLIP11.91□□□□□ -0.5
GYPB-206ENST00000506516 TNIKQ9UKE5 1360 aa11.91□□□□□ -0.5
GYPB-206ENST00000506516 UBTFP17480 764 aaKnown RBP11.9□□□□□ -0.5
GYPB-206ENST00000506516 PTPRGP23470 1445 aa11.9□□□□□ -0.5
GYPB-206ENST00000506516 ATXN8OSP0DMR3 200 aa11.89□□□□□ -0.51
GYPB-206ENST00000506516 UGGT2Q9NYU1 1516 aa11.88□□□□□ -0.51
GYPB-206ENST00000506516 TRHP20396 242 aaPredicted RBP11.88□□□□□ -0.51
GYPB-206ENST00000506516 GOLGA3Q08378 1498 aa11.87□□□□□ -0.51
GYPB-206ENST00000506516 DISP1Q96F81 1524 aa11.86□□□□□ -0.51
GYPB-206ENST00000506516 KIF21BO75037 1637 aa11.86□□□□□ -0.51
GYPB-206ENST00000506516 CTTNBP2Q8WZ74 1663 aa11.85□□□□□ -0.51
GYPB-206ENST00000506516 RANGAP1P46060 587 aaPredicted RBP11.85□□□□□ -0.51
GYPB-206ENST00000506516 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.84□□□□□ -0.51
GYPB-206ENST00000506516 HNRNPUL2Q1KMD3 747 aaKnown RBP11.84□□□□□ -0.51
GYPB-206ENST00000506516 P3H3Q8IVL6 736 aa11.84□□□□□ -0.51
GYPB-206ENST00000506516 KIAA0556O60303 1618 aa11.81□□□□□ -0.52
GYPB-206ENST00000506516 UACAQ9BZF9 1416 aa11.8□□□□□ -0.52
GYPB-206ENST00000506516 SAMD1Q6SPF0 538 aaPredicted RBP11.8□□□□□ -0.52
GYPB-206ENST00000506516 UHRF1BP1LA0JNW5 1464 aa11.76□□□□□ -0.53
GYPB-206ENST00000506516 ADCY10Q96PN6 1610 aa11.75□□□□□ -0.53
GYPB-206ENST00000506516 SPINK5Q9NQ38 1064 aaPredicted RBP11.74□□□□□ -0.53
GYPB-206ENST00000506516 ABCC2Q92887 1545 aa11.74□□□□□ -0.53
GYPB-206ENST00000506516 EFCAB5A4FU69 1503 aa11.73□□□□□ -0.53
GYPB-206ENST00000506516 SAMD9Q5K651 1589 aa11.73□□□□□ -0.53
GYPB-206ENST00000506516 PLB1Q6P1J6 1458 aa11.73□□□□□ -0.53
GYPB-206ENST00000506516 FAM69CQ0P6D2 419 aa11.72□□□□□ -0.53
GYPB-206ENST00000506516 FHOD3Q2V2M9 1422 aa11.71□□□□□ -0.53
GYPB-206ENST00000506516 CAPN15O75808 1086 aa11.71□□□□□ -0.53
GYPB-206ENST00000506516 APLP2Q06481 763 aa11.71□□□□□ -0.53
GYPB-206ENST00000506516 MAPKBP1O60336 1514 aa11.7□□□□□ -0.54
GYPB-206ENST00000506516 ATF5Q9Y2D1 282 aaPredicted RBP11.7□□□□□ -0.54
GYPB-206ENST00000506516 KDM5BQ9UGL1 1544 aa11.7□□□□□ -0.54
GYPB-206ENST00000506516 ABCA8O94911 1581 aa11.69□□□□□ -0.54
GYPB-206ENST00000506516 ABCC10Q5T3U5 1492 aa11.68□□□□□ -0.54
GYPB-206ENST00000506516 ASXL2Q76L83 1435 aa11.68□□□□□ -0.54
GYPB-206ENST00000506516 LOC105371045A0A1W2PR82 267 aa11.67□□□□□ -0.54
GYPB-206ENST00000506516 ARID3CA6NKF2 412 aa11.67□□□□□ -0.54
GYPB-206ENST00000506516 ATP1B4Q9UN42 357 aaPredicted RBP11.67□□□□□ -0.54
GYPB-206ENST00000506516 ARHGAP35Q9NRY4 1499 aa11.67□□□□□ -0.54
GYPB-206ENST00000506516 FMN1Q68DA7 1419 aa11.67□□□□□ -0.54
GYPB-206ENST00000506516 KCNH8Q96L42 1107 aa11.65□□□□□ -0.54
GYPB-206ENST00000506516 ATP10BO94823 1461 aa11.64□□□□□ -0.55
GYPB-206ENST00000506516 CLIP1P30622 1438 aa11.64□□□□□ -0.55
GYPB-206ENST00000506516 ZCCHC11Q5TAX3 1644 aaKnown RBP11.64□□□□□ -0.55
GYPB-206ENST00000506516 RAPGEF6Q8TEU7 1601 aa11.64□□□□□ -0.55
GYPB-206ENST00000506516 PLEKHD1A6NEE1 506 aa11.63□□□□□ -0.55
GYPB-206ENST00000506516 DSG3P32926 999 aa11.62□□□□□ -0.55
GYPB-206ENST00000506516 CDK11AQ9UQ88 783 aaPredicted RBP11.61□□□□□ -0.55
GYPB-206ENST00000506516 WDR7Q9Y4E6 1490 aa11.61□□□□□ -0.55
GYPB-206ENST00000506516 DIP2BQ9P265 1576 aa11.6□□□□□ -0.55
GYPB-206ENST00000506516 NUP153P49790 1475 aaKnown RBP11.6□□□□□ -0.55
GYPB-206ENST00000506516 EPRSP07814 1512 aaKnown RBP11.6□□□□□ -0.55
GYPB-206ENST00000506516 ZNF219Q9P2Y4 722 aaPredicted RBP11.59□□□□□ -0.55
GYPB-206ENST00000506516 GLI2P10070 1586 aa11.58□□□□□ -0.55
GYPB-206ENST00000506516 CEP162Q5TB80 1403 aa11.58□□□□□ -0.56
GYPB-206ENST00000506516 KIF13AQ9H1H9 1805 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms