RNA–Protein interactions for RNA: ENST00000505615.1

VCAN-206, Transcript of versican, humanhuman

TSL 5

Gene VCAN, Length 810 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-206ENST00000505615 IFT140Q96RY7 1462 aa13.83□□□□□ -0.2
VCAN-206ENST00000505615 CHD1O14646 1710 aa13.82□□□□□ -0.2
VCAN-206ENST00000505615 EIF4G3O43432 1585 aaKnown RBP13.81□□□□□ -0.2
VCAN-206ENST00000505615 ZBTB22O15209 634 aa13.8□□□□□ -0.2
VCAN-206ENST00000505615 AKT1S1Q96B36 256 aa13.79□□□□□ -0.2
VCAN-206ENST00000505615 TOP2AP11388 1531 aaKnown RBP13.77□□□□□ -0.21
VCAN-206ENST00000505615 TOPBP1Q92547 1522 aa13.74□□□□□ -0.21
VCAN-206ENST00000505615 RSF1Q96T23 1441 aaPredicted RBP13.74□□□□□ -0.21
VCAN-206ENST00000505615 TARBP1Q13395 1621 aaKnown RBP13.7□□□□□ -0.22
VCAN-206ENST00000505615 AQRO60306 1485 aaKnown RBP eCLIP13.67□□□□□ -0.22
VCAN-206ENST00000505615 REM2Q8IYK8 340 aaPredicted RBP13.66□□□□□ -0.22
VCAN-206ENST00000505615 DNMBPQ6XZF7 1577 aa13.66□□□□□ -0.22
VCAN-206ENST00000505615 CLASP1Q7Z460 1538 aa13.64□□□□□ -0.23
VCAN-206ENST00000505615 ATXN8OSP0DMR3 200 aa13.63□□□□□ -0.23
VCAN-206ENST00000505615 ABCC8Q09428 1581 aa13.62□□□□□ -0.23
VCAN-206ENST00000505615 CCDC88BA6NC98 1476 aa13.59□□□□□ -0.23
VCAN-206ENST00000505615 POLA1P09884 1462 aaPredicted RBP13.58□□□□□ -0.24
VCAN-206ENST00000505615 FBLN2P98095 1184 aa13.57□□□□□ -0.24
VCAN-206ENST00000505615 PIP4P2Q8N4L2 257 aa13.56□□□□□ -0.24
VCAN-206ENST00000505615 SNAPC4Q5SXM2 1469 aa13.54□□□□□ -0.24
VCAN-206ENST00000505615 SYNJ1O43426 1573 aa13.54□□□□□ -0.24
VCAN-206ENST00000505615 PITPNM1O00562 1244 aa13.53□□□□□ -0.24
VCAN-206ENST00000505615 RAD54L2Q9Y4B4 1467 aa13.52□□□□□ -0.25
VCAN-206ENST00000505615 WDR97A6NE52 1622 aa13.5□□□□□ -0.25
VCAN-206ENST00000505615 SP7Q8TDD2 431 aaPredicted RBP13.5□□□□□ -0.25
VCAN-206ENST00000505615 TDRD9Q8NDG6 1382 aaKnown RBP13.48□□□□□ -0.25
VCAN-206ENST00000505615 MAGI1Q96QZ7 1491 aaPredicted RBP13.48□□□□□ -0.25
VCAN-206ENST00000505615 FXR2P51116 673 aaKnown RBP eCLIP13.47□□□□□ -0.25
VCAN-206ENST00000505615 GAPVD1Q14C86 1478 aa13.47□□□□□ -0.25
VCAN-206ENST00000505615 SOGA1O94964 1423 aa13.44□□□□□ -0.26
VCAN-206ENST00000505615 SYNJ2O15056 1496 aa13.42□□□□□ -0.26
VCAN-206ENST00000505615 SPDYE2BA6NHP3 402 aa13.41□□□□□ -0.26
VCAN-206ENST00000505615 SPDYE6P0CI01 402 aa13.41□□□□□ -0.26
VCAN-206ENST00000505615 SPDYE2Q495Y8 402 aa13.41□□□□□ -0.26
VCAN-206ENST00000505615 CHMP7Q8WUX9 453 aaPredicted RBP13.41□□□□□ -0.26
VCAN-206ENST00000505615 GRIN2BQ13224 1484 aa13.41□□□□□ -0.26
VCAN-206ENST00000505615 FGD5Q6ZNL6 1462 aa13.41□□□□□ -0.26
VCAN-206ENST00000505615 KIF13AQ9H1H9 1805 aa13.41□□□□□ -0.26
VCAN-206ENST00000505615 ERCC6L2Q5T890 1561 aa13.4□□□□□ -0.26
VCAN-206ENST00000505615 PBRM1Q86U86 1689 aa13.4□□□□□ -0.26
VCAN-206ENST00000505615 MKRN4PQ13434 485 aaPredicted RBP13.35□□□□□ -0.27
VCAN-206ENST00000505615 CUX1P39880 1505 aa13.34□□□□□ -0.27
VCAN-206ENST00000505615 ABCA5Q8WWZ7 1642 aa13.31□□□□□ -0.28
VCAN-206ENST00000505615 CEP170Q5SW79 1584 aa13.3□□□□□ -0.28
VCAN-206ENST00000505615 HAX1O00165 279 aa13.29□□□□□ -0.28
VCAN-206ENST00000505615 ILDR1Q86SU0 546 aaPredicted RBP13.29□□□□□ -0.28
VCAN-206ENST00000505615 SHROOM2Q13796 1616 aa13.28□□□□□ -0.28
VCAN-206ENST00000505615 GRIN2AQ12879 1464 aa13.25□□□□□ -0.29
VCAN-206ENST00000505615 NUP160Q12769 1436 aa13.25□□□□□ -0.29
VCAN-206ENST00000505615 SSUH2Q9Y2M2 353 aa13.25□□□□□ -0.29
VCAN-206ENST00000505615 ABCA10Q8WWZ4 1543 aa13.24□□□□□ -0.29
VCAN-206ENST00000505615 ADAMTS12P58397 1594 aa13.24□□□□□ -0.29
VCAN-206ENST00000505615 KDM4FA0A1W2PPD8 638 aa13.21□□□□□ -0.29
VCAN-206ENST00000505615 SPDYE1Q8NFV5 336 aaPredicted RBP13.2□□□□□ -0.3
VCAN-206ENST00000505615 EVX2Q03828 476 aa13.19□□□□□ -0.3
VCAN-206ENST00000505615 ABCC10Q5T3U5 1492 aa13.18□□□□□ -0.3
VCAN-206ENST00000505615 DIP2BQ9P265 1576 aa13.18□□□□□ -0.3
VCAN-206ENST00000505615 ZNF692Q9BU19 519 aaPredicted RBP13.16□□□□□ -0.3
VCAN-206ENST00000505615 KDM6BO15054 1643 aa13.16□□□□□ -0.3
VCAN-206ENST00000505615 MAPKBP1O60336 1514 aa13.15□□□□□ -0.3
VCAN-206ENST00000505615 PRKAR2AP13861 404 aaKnown RBP13.14□□□□□ -0.31
VCAN-206ENST00000505615 FAM69CQ0P6D2 419 aa13.12□□□□□ -0.31
VCAN-206ENST00000505615 CLEC11AQ9Y240 323 aa13.12□□□□□ -0.31
VCAN-206ENST00000505615 TSPOAP1O95153 1857 aa13.12□□□□□ -0.31
VCAN-206ENST00000505615 FHAD1B1AJZ9 1412 aa13.11□□□□□ -0.31
VCAN-206ENST00000505615 ADCY10Q96PN6 1610 aa13.1□□□□□ -0.31
VCAN-206ENST00000505615 PRG4Q92954 1404 aaPredicted RBP13.1□□□□□ -0.31
VCAN-206ENST00000505615 ERICH3Q5RHP9 1530 aa13.06□□□□□ -0.32
VCAN-206ENST00000505615 RUSC2Q8N2Y8 1516 aa13.06□□□□□ -0.32
VCAN-206ENST00000505615 C19orf67A6NJJ6 358 aa13.04□□□□□ -0.32
VCAN-206ENST00000505615 WRNQ14191 1432 aaPredicted RBP eCLIP13.03□□□□□ -0.32
VCAN-206ENST00000505615 HECW2Q9P2P5 1572 aa13.03□□□□□ -0.32
VCAN-206ENST00000505615 BIVM-ERCC5R4GMW8 1640 aa13.02□□□□□ -0.32
VCAN-206ENST00000505615 JPH4Q96JJ6 628 aa13.02□□□□□ -0.33
VCAN-206ENST00000505615 ADGRL1O94910 1474 aa13.02□□□□□ -0.33
VCAN-206ENST00000505615 PPRC1Q5VV67 1664 aaKnown RBP13.02□□□□□ -0.33
VCAN-206ENST00000505615 TOP2BQ02880 1626 aa12.99□□□□□ -0.33
VCAN-206ENST00000505615 NPM1P06748 294 aaKnown RBP eCLIP12.97□□□□□ -0.33
VCAN-206ENST00000505615 CSRNP3Q8WYN3 585 aa12.95□□□□□ -0.34
VCAN-206ENST00000505615 CHADLQ6NUI6 762 aa12.94□□□□□ -0.34
VCAN-206ENST00000505615 GLI2P10070 1586 aa12.92□□□□□ -0.34
VCAN-206ENST00000505615 COL17A1Q9UMD9 1497 aaPredicted RBP12.91□□□□□ -0.34
VCAN-206ENST00000505615 PRR29P0C7W0 189 aa12.9□□□□□ -0.34
VCAN-206ENST00000505615 KIAA0586Q9BVV6 1533 aa12.88□□□□□ -0.35
VCAN-206ENST00000505615 ABCC2Q92887 1545 aa12.87□□□□□ -0.35
VCAN-206ENST00000505615 GABBR2O75899 941 aa12.86□□□□□ -0.35
VCAN-206ENST00000505615 CUL7Q14999 1698 aa12.85□□□□□ -0.35
VCAN-206ENST00000505615 ASXL2Q76L83 1435 aa12.85□□□□□ -0.35
VCAN-206ENST00000505615 MAP3K4Q9Y6R4 1608 aa12.84□□□□□ -0.35
VCAN-206ENST00000505615 PLB1Q6P1J6 1458 aa12.84□□□□□ -0.35
VCAN-206ENST00000505615 FBXO41Q8TF61 875 aa12.82□□□□□ -0.36
VCAN-206ENST00000505615 PTPRGP23470 1445 aa12.81□□□□□ -0.36
VCAN-206ENST00000505615 EPRSP07814 1512 aaKnown RBP12.79□□□□□ -0.36
VCAN-206ENST00000505615 UHRF1BP1LA0JNW5 1464 aa12.78□□□□□ -0.36
VCAN-206ENST00000505615 TNIKQ9UKE5 1360 aa12.77□□□□□ -0.37
VCAN-206ENST00000505615 TEX14Q8IWB6 1497 aa12.77□□□□□ -0.37
VCAN-206ENST00000505615 FARP1Q9Y4F1 1045 aaPredicted RBP12.75□□□□□ -0.37
VCAN-206ENST00000505615 KDM5BQ9UGL1 1544 aa12.74□□□□□ -0.37
VCAN-206ENST00000505615 IGF1RP08069 1367 aa12.74□□□□□ -0.37
VCAN-206ENST00000505615 ZCCHC11Q5TAX3 1644 aaKnown RBP12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms