RNA–Protein interactions for RNA: ENST00000502998.1

CLCN3-203, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 3

Gene CLCN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-203ENST00000502998 PKNOX2Q96KN3 472 aa9.8□□□□□ -0.84
CLCN3-203ENST00000502998 WDR62O43379 1518 aa9.8□□□□□ -0.84
CLCN3-203ENST00000502998 CADPSQ9ULU8 1353 aa9.79□□□□□ -0.84
CLCN3-203ENST00000502998 NEFLP07196 543 aa9.78□□□□□ -0.84
CLCN3-203ENST00000502998 OSCARQ8IYS5 282 aa9.76□□□□□ -0.85
CLCN3-203ENST00000502998 RSF1Q96T23 1441 aaPredicted RBP9.75□□□□□ -0.85
CLCN3-203ENST00000502998 KCNA4P22459 653 aa9.73□□□□□ -0.85
CLCN3-203ENST00000502998 SAMD1Q6SPF0 538 aaPredicted RBP9.72□□□□□ -0.85
CLCN3-203ENST00000502998 TOP2AP11388 1531 aaKnown RBP9.72□□□□□ -0.85
CLCN3-203ENST00000502998 PDIA4P13667 645 aaKnown RBP9.71□□□□□ -0.86
CLCN3-203ENST00000502998 ZEB1P37275 1124 aaPredicted RBP9.71□□□□□ -0.86
CLCN3-203ENST00000502998 ERICH6BQ5W0A0 696 aa9.71□□□□□ -0.86
CLCN3-203ENST00000502998 RBM42Q9BTD8 480 aaKnown RBP9.71□□□□□ -0.86
CLCN3-203ENST00000502998 RIMBP3CA6NJZ7 1639 aa9.69□□□□□ -0.86
CLCN3-203ENST00000502998 RIMBP3BA6NNM3 1639 aa9.69□□□□□ -0.86
CLCN3-203ENST00000502998 CSRNP3Q8WYN3 585 aa9.69□□□□□ -0.86
CLCN3-203ENST00000502998 RIMBP3Q9UFD9 1639 aa9.69□□□□□ -0.86
CLCN3-203ENST00000502998 CFTRP13569 1480 aa9.68□□□□□ -0.86
CLCN3-203ENST00000502998 FANCD2Q9BXW9 1451 aa9.68□□□□□ -0.86
CLCN3-203ENST00000502998 CEP164Q9UPV0 1460 aa9.68□□□□□ -0.86
CLCN3-203ENST00000502998 ANO8Q9HCE9 1232 aaPredicted RBP9.67□□□□□ -0.86
CLCN3-203ENST00000502998 MYT1LQ9UL68 1186 aa9.67□□□□□ -0.86
CLCN3-203ENST00000502998 URB2Q14146 1524 aaKnown RBP9.66□□□□□ -0.86
CLCN3-203ENST00000502998 PPARGC1BQ86YN6 1023 aaKnown RBP9.66□□□□□ -0.86
CLCN3-203ENST00000502998 GTF3C3Q9Y5Q9 886 aa9.66□□□□□ -0.86
CLCN3-203ENST00000502998 TULP1O00294 542 aaPredicted RBP9.64□□□□□ -0.87
CLCN3-203ENST00000502998 ARHGEF11O15085 1522 aa9.64□□□□□ -0.87
CLCN3-203ENST00000502998 PDE4CQ08493 712 aa9.63□□□□□ -0.87
CLCN3-203ENST00000502998 ZNF608Q9ULD9 1512 aaPredicted RBP9.61□□□□□ -0.87
CLCN3-203ENST00000502998 CHRDL2Q6WN34 429 aa9.61□□□□□ -0.87
CLCN3-203ENST00000502998 CCDC88BA6NC98 1476 aa9.6□□□□□ -0.87
CLCN3-203ENST00000502998 PRDM2Q13029 1718 aa9.59□□□□□ -0.87
CLCN3-203ENST00000502998 CYB5RLQ6IPT4 315 aa9.59□□□□□ -0.87
CLCN3-203ENST00000502998 ARAP1Q96P48 1450 aa9.55□□□□□ -0.88
CLCN3-203ENST00000502998 NEUROD1Q13562 356 aa9.55□□□□□ -0.88
CLCN3-203ENST00000502998 TAF7LQ5H9L4 462 aa9.55□□□□□ -0.88
CLCN3-203ENST00000502998 POLA2Q14181 598 aa9.54□□□□□ -0.88
CLCN3-203ENST00000502998 NPM2Q86SE8 214 aaKnown RBP9.52□□□□□ -0.89
CLCN3-203ENST00000502998 MYCNP04198 464 aaPredicted RBP9.5□□□□□ -0.89
CLCN3-203ENST00000502998 IFT140Q96RY7 1462 aa9.5□□□□□ -0.89
CLCN3-203ENST00000502998 TOPBP1Q92547 1522 aa9.5□□□□□ -0.89
CLCN3-203ENST00000502998 FGD1P98174 961 aa9.48□□□□□ -0.89
CLCN3-203ENST00000502998 FBXO3Q9UK99 471 aa9.48□□□□□ -0.89
CLCN3-203ENST00000502998 CLSPNQ9HAW4 1339 aa9.48□□□□□ -0.89
CLCN3-203ENST00000502998 AQRO60306 1485 aaKnown RBP eCLIP9.47□□□□□ -0.89
CLCN3-203ENST00000502998 EIF4G3O43432 1585 aaKnown RBP9.47□□□□□ -0.89
CLCN3-203ENST00000502998 DNMBPQ6XZF7 1577 aa9.47□□□□□ -0.89
CLCN3-203ENST00000502998 CHD1O14646 1710 aa9.47□□□□□ -0.89
CLCN3-203ENST00000502998 ABCC8Q09428 1581 aa9.46□□□□□ -0.89
CLCN3-203ENST00000502998 TAOK2Q9UL54 1235 aa9.46□□□□□ -0.9
CLCN3-203ENST00000502998 GLIPR1L2Q4G1C9 344 aa9.44□□□□□ -0.9
CLCN3-203ENST00000502998 SP7Q8TDD2 431 aaPredicted RBP9.43□□□□□ -0.9
CLCN3-203ENST00000502998 TARBP1Q13395 1621 aaKnown RBP9.42□□□□□ -0.9
CLCN3-203ENST00000502998 AKT1S1Q96B36 256 aa9.42□□□□□ -0.9
CLCN3-203ENST00000502998 BRD2P25440 801 aaKnown RBP9.41□□□□□ -0.9
CLCN3-203ENST00000502998 FBLN2P98095 1184 aa9.41□□□□□ -0.9
CLCN3-203ENST00000502998 SALL2Q9Y467 1007 aaPredicted RBP9.41□□□□□ -0.9
CLCN3-203ENST00000502998 POLA1P09884 1462 aaPredicted RBP9.4□□□□□ -0.9
CLCN3-203ENST00000502998 ZNF326Q5BKZ1 582 aaKnown RBP9.4□□□□□ -0.9
CLCN3-203ENST00000502998 RAD54L2Q9Y4B4 1467 aa9.38□□□□□ -0.91
CLCN3-203ENST00000502998 CLASP1Q7Z460 1538 aa9.37□□□□□ -0.91
CLCN3-203ENST00000502998 CDK11AQ9UQ88 783 aaPredicted RBP9.37□□□□□ -0.91
CLCN3-203ENST00000502998 TDRD9Q8NDG6 1382 aaKnown RBP9.37□□□□□ -0.91
CLCN3-203ENST00000502998 C14orf37Q86TY3 774 aa9.36□□□□□ -0.91
CLCN3-203ENST00000502998 SOGA1O94964 1423 aa9.36□□□□□ -0.91
CLCN3-203ENST00000502998 CUX1P39880 1505 aa9.36□□□□□ -0.91
CLCN3-203ENST00000502998 FGD5Q6ZNL6 1462 aa9.35□□□□□ -0.91
CLCN3-203ENST00000502998 BCL11BQ9C0K0 894 aaPredicted RBP9.35□□□□□ -0.91
CLCN3-203ENST00000502998 ZBTB12Q9Y330 459 aaPredicted RBP9.35□□□□□ -0.91
CLCN3-203ENST00000502998 SUPT5HO00267 1087 aaKnown RBP9.34□□□□□ -0.91
CLCN3-203ENST00000502998 BCANQ96GW7 911 aa9.34□□□□□ -0.91
CLCN3-203ENST00000502998 AAMPQ13685 434 aa9.33□□□□□ -0.92
CLCN3-203ENST00000502998 CHMP4AQ9BY43 222 aa9.33□□□□□ -0.92
CLCN3-203ENST00000502998 PCGF6Q9BYE7 350 aa9.32□□□□□ -0.92
CLCN3-203ENST00000502998 SNAPC4Q5SXM2 1469 aa9.32□□□□□ -0.92
CLCN3-203ENST00000502998 WDR97A6NE52 1622 aa9.31□□□□□ -0.92
CLCN3-203ENST00000502998 REM2Q8IYK8 340 aaPredicted RBP9.31□□□□□ -0.92
CLCN3-203ENST00000502998 RSPH4AQ5TD94 716 aa9.3□□□□□ -0.92
CLCN3-203ENST00000502998 PIP4P2Q8N4L2 257 aa9.3□□□□□ -0.92
CLCN3-203ENST00000502998 RSPH6AQ9H0K4 717 aa9.3□□□□□ -0.92
CLCN3-203ENST00000502998 TPRNQ4KMQ1 711 aa9.28□□□□□ -0.92
CLCN3-203ENST00000502998 ATF5Q9Y2D1 282 aaPredicted RBP9.28□□□□□ -0.92
CLCN3-203ENST00000502998 GRIN2BQ13224 1484 aa9.28□□□□□ -0.92
CLCN3-203ENST00000502998 GAPVD1Q14C86 1478 aa9.28□□□□□ -0.92
CLCN3-203ENST00000502998 CHMP7Q8WUX9 453 aaPredicted RBP9.27□□□□□ -0.93
CLCN3-203ENST00000502998 ERCC6L2Q5T890 1561 aa9.27□□□□□ -0.93
CLCN3-203ENST00000502998 MAGI1Q96QZ7 1491 aaPredicted RBP9.27□□□□□ -0.93
CLCN3-203ENST00000502998 CCDC136Q96JN2 1154 aa9.26□□□□□ -0.93
CLCN3-203ENST00000502998 TSHZ2Q9NRE2 1034 aa9.26□□□□□ -0.93
CLCN3-203ENST00000502998 PBRM1Q86U86 1689 aa9.26□□□□□ -0.93
CLCN3-203ENST00000502998 SYNJ1O43426 1573 aa9.25□□□□□ -0.93
CLCN3-203ENST00000502998 HSP90B1P14625 803 aaKnown RBP9.25□□□□□ -0.93
CLCN3-203ENST00000502998 ABCA10Q8WWZ4 1543 aa9.25□□□□□ -0.93
CLCN3-203ENST00000502998 ABCA5Q8WWZ7 1642 aa9.24□□□□□ -0.93
CLCN3-203ENST00000502998 SYNJ2O15056 1496 aa9.24□□□□□ -0.93
CLCN3-203ENST00000502998 CDK11BP21127 795 aaKnown RBP9.24□□□□□ -0.93
CLCN3-203ENST00000502998 HAX1O00165 279 aa9.22□□□□□ -0.93
CLCN3-203ENST00000502998 FXR2P51116 673 aaKnown RBP eCLIP9.22□□□□□ -0.93
CLCN3-203ENST00000502998 TOP2BQ02880 1626 aa9.21□□□□□ -0.93
CLCN3-203ENST00000502998 BIVM-ERCC5R4GMW8 1640 aa9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms