RNA–Protein interactions for RNA: ENST00000502998.1

CLCN3-203, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 3

Gene CLCN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-203ENST00000502998 AEBP2Q6ZN18 517 aaPredicted RBP17.01■□□□□ 0.31
CLCN3-203ENST00000502998 CHIC1Q5VXU3 224 aa15.92■□□□□ 0.14
CLCN3-203ENST00000502998 SENP3Q9H4L4 574 aaPredicted RBP14.59□□□□□ -0.07
CLCN3-203ENST00000502998 PHF23Q9BUL5 403 aaPredicted RBP14.34□□□□□ -0.11
CLCN3-203ENST00000502998 FOXD1Q16676 465 aa13.62□□□□□ -0.23
CLCN3-203ENST00000502998 POTEDQ86YR6 584 aa13.13□□□□□ -0.31
CLCN3-203ENST00000502998 NISCHQ9Y2I1 1504 aa12.91□□□□□ -0.34
CLCN3-203ENST00000502998 MSH5O43196 834 aa12.9□□□□□ -0.34
CLCN3-203ENST00000502998 PIAS4Q8N2W9 510 aaPredicted RBP12.64□□□□□ -0.39
CLCN3-203ENST00000502998 PLPPR3Q6T4P5 718 aa12.52□□□□□ -0.41
CLCN3-203ENST00000502998 PPP6R1Q9UPN7 881 aa12.47□□□□□ -0.41
CLCN3-203ENST00000502998 ADRA2BP18089 450 aa12.39□□□□□ -0.43
CLCN3-203ENST00000502998 MYT1Q01538 1121 aa12.17□□□□□ -0.46
CLCN3-203ENST00000502998 PELP1Q8IZL8 1130 aaKnown RBP12.11□□□□□ -0.47
CLCN3-203ENST00000502998 TTBK1Q5TCY1 1321 aaPredicted RBP11.88□□□□□ -0.51
CLCN3-203ENST00000502998 ABCC9O60706 1549 aa11.84□□□□□ -0.51
CLCN3-203ENST00000502998 SLC24A1O60721 1099 aa11.66□□□□□ -0.54
CLCN3-203ENST00000502998 CCDC180Q9P1Z9 1646 aa11.57□□□□□ -0.56
CLCN3-203ENST00000502998 DNAJC5BQ9UF47 199 aa11.52□□□□□ -0.57
CLCN3-203ENST00000502998 DMRT2Q9Y5R5 561 aa11.52□□□□□ -0.57
CLCN3-203ENST00000502998 MAPK8IP2Q13387 824 aaPredicted RBP11.48□□□□□ -0.57
CLCN3-203ENST00000502998 SCAF1Q9H7N4 1312 aaKnown RBP11.39□□□□□ -0.59
CLCN3-203ENST00000502998 ERICH6Q7L0X2 663 aa11.29□□□□□ -0.6
CLCN3-203ENST00000502998 CACNB1Q02641 598 aaPredicted RBP11.24□□□□□ -0.61
CLCN3-203ENST00000502998 APLP2Q06481 763 aa11.19□□□□□ -0.62
CLCN3-203ENST00000502998 PRKCSHP14314 528 aaPredicted RBP11.15□□□□□ -0.62
CLCN3-203ENST00000502998 DAXXQ9UER7 740 aaPredicted RBP11.08□□□□□ -0.64
CLCN3-203ENST00000502998 RB1CC1Q8TDY2 1594 aa11.04□□□□□ -0.64
CLCN3-203ENST00000502998 PABPN1Q86U42 306 aaKnown RBP eCLIP11.02□□□□□ -0.65
CLCN3-203ENST00000502998 DCAF8L1A6NGE4 600 aa11.01□□□□□ -0.65
CLCN3-203ENST00000502998 HOXD11P31277 338 aaPredicted RBP10.97□□□□□ -0.65
CLCN3-203ENST00000502998 RNF39Q9H2S5 420 aa10.96□□□□□ -0.65
CLCN3-203ENST00000502998 NACADO15069 1562 aa10.93□□□□□ -0.66
CLCN3-203ENST00000502998 PPP4R3CPQ6ZMV5 832 aa10.92□□□□□ -0.66
CLCN3-203ENST00000502998 DCAF8L2P0C7V8 631 aa10.89□□□□□ -0.67
CLCN3-203ENST00000502998 UNC13AQ9UPW8 1703 aa10.88□□□□□ -0.67
CLCN3-203ENST00000502998 BICRAQ9NZM4 1560 aa10.86□□□□□ -0.67
CLCN3-203ENST00000502998 CNKSR2Q8WXI2 1034 aa10.81□□□□□ -0.68
CLCN3-203ENST00000502998 C1QBPQ07021 282 aaKnown RBP10.8□□□□□ -0.68
CLCN3-203ENST00000502998 RNF216Q9NWF9 866 aaPredicted RBP10.8□□□□□ -0.68
CLCN3-203ENST00000502998 MYO15BQ96JP2 1530 aa10.79□□□□□ -0.68
CLCN3-203ENST00000502998 ZCCHC6Q5VYS8 1495 aaKnown RBP10.71□□□□□ -0.69
CLCN3-203ENST00000502998 DNAJC5Q9H3Z4 198 aa10.69□□□□□ -0.7
CLCN3-203ENST00000502998 CECR2Q9BXF3 1484 aa10.68□□□□□ -0.7
CLCN3-203ENST00000502998 CC2D2AQ9P2K1 1620 aa10.66□□□□□ -0.7
CLCN3-203ENST00000502998 DCAF1Q9Y4B6 1507 aa10.66□□□□□ -0.7
CLCN3-203ENST00000502998 BCL11AQ9H165 835 aa10.62□□□□□ -0.71
CLCN3-203ENST00000502998 SCRIBQ14160 1630 aa10.56□□□□□ -0.72
CLCN3-203ENST00000502998 EIF4G1Q04637 1599 aaKnown RBP10.56□□□□□ -0.72
CLCN3-203ENST00000502998 SHROOM4Q9ULL8 1493 aa10.53□□□□□ -0.72
CLCN3-203ENST00000502998 EIF5BO60841 1220 aaKnown RBP10.48□□□□□ -0.73
CLCN3-203ENST00000502998 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.42□□□□□ -0.74
CLCN3-203ENST00000502998 NCBP3Q53F19 620 aaKnown RBP10.41□□□□□ -0.74
CLCN3-203ENST00000502998 HRCP23327 699 aa10.38□□□□□ -0.75
CLCN3-203ENST00000502998 FAM9AQ8IZU1 332 aaPredicted RBP10.38□□□□□ -0.75
CLCN3-203ENST00000502998 CENPBP07199 599 aaPredicted RBP10.28□□□□□ -0.76
CLCN3-203ENST00000502998 CUX2O14529 1486 aa10.26□□□□□ -0.77
CLCN3-203ENST00000502998 NPM3O75607 178 aaKnown RBP10.24□□□□□ -0.77
CLCN3-203ENST00000502998 ARXQ96QS3 562 aa10.24□□□□□ -0.77
CLCN3-203ENST00000502998 POTEHQ6S545 545 aa10.23□□□□□ -0.77
CLCN3-203ENST00000502998 RANGAP1P46060 587 aaPredicted RBP10.21□□□□□ -0.77
CLCN3-203ENST00000502998 ERCC6Q03468 1493 aa10.17□□□□□ -0.78
CLCN3-203ENST00000502998 U3KPZ7 1027 aaPredicted RBP10.16□□□□□ -0.78
CLCN3-203ENST00000502998 DSG3P32926 999 aa10.15□□□□□ -0.78
CLCN3-203ENST00000502998 NESP48681 1621 aa10.13□□□□□ -0.79
CLCN3-203ENST00000502998 NCAPD3P42695 1498 aa10.12□□□□□ -0.79
CLCN3-203ENST00000502998 CAPN15O75808 1086 aa10.11□□□□□ -0.79
CLCN3-203ENST00000502998 SPINK5Q9NQ38 1064 aaPredicted RBP10.1□□□□□ -0.79
CLCN3-203ENST00000502998 UBE2Q2Q8WVN8 375 aa10.09□□□□□ -0.79
CLCN3-203ENST00000502998 SMARCA4P51532 1647 aa10.07□□□□□ -0.8
CLCN3-203ENST00000502998 ATAD2BQ9ULI0 1458 aa10.07□□□□□ -0.8
CLCN3-203ENST00000502998 TRIM41Q8WV44 630 aa10.07□□□□□ -0.8
CLCN3-203ENST00000502998 SMARCA2P51531 1590 aa10.03□□□□□ -0.8
CLCN3-203ENST00000502998 THOC2Q8NI27 1593 aaKnown RBP10.03□□□□□ -0.8
CLCN3-203ENST00000502998 BAZ1AQ9NRL2 1556 aaPredicted RBP10.02□□□□□ -0.81
CLCN3-203ENST00000502998 HMGXB3Q12766 1538 aa10.02□□□□□ -0.81
CLCN3-203ENST00000502998 BAZ1BQ9UIG0 1483 aaKnown RBP9.98□□□□□ -0.81
CLCN3-203ENST00000502998 ANP32EQ9BTT0 268 aa9.97□□□□□ -0.81
CLCN3-203ENST00000502998 PODXL2Q9NZ53 605 aa9.97□□□□□ -0.81
CLCN3-203ENST00000502998 MROH2BQ7Z745 1585 aa9.97□□□□□ -0.81
CLCN3-203ENST00000502998 PEG3Q9GZU2 1588 aa9.97□□□□□ -0.81
CLCN3-203ENST00000502998 PLEKHG5O94827 1062 aa9.95□□□□□ -0.82
CLCN3-203ENST00000502998 KIF21AQ7Z4S6 1674 aa9.93□□□□□ -0.82
CLCN3-203ENST00000502998 RTN4Q9NQC3 1192 aaKnown RBP9.91□□□□□ -0.82
CLCN3-203ENST00000502998 LAMC3Q9Y6N6 1575 aa9.88□□□□□ -0.83
CLCN3-203ENST00000502998 SLC4A2P04920 1241 aa9.87□□□□□ -0.83
CLCN3-203ENST00000502998 HOMEZQ8IX15 550 aa9.87□□□□□ -0.83
CLCN3-203ENST00000502998 ZNF219Q9P2Y4 722 aaPredicted RBP9.87□□□□□ -0.83
CLCN3-203ENST00000502998 TRHP20396 242 aaPredicted RBP9.86□□□□□ -0.83
CLCN3-203ENST00000502998 WIZO95785 1651 aa9.85□□□□□ -0.83
CLCN3-203ENST00000502998 ACIN1Q9UKV3 1341 aaKnown RBP9.83□□□□□ -0.84
CLCN3-203ENST00000502998 PDS5BQ9NTI5 1447 aa9.83□□□□□ -0.84
CLCN3-203ENST00000502998 ABCB7O75027 752 aa9.82□□□□□ -0.84
CLCN3-203ENST00000502998 KLHL34Q8N239 644 aa9.81□□□□□ -0.84
CLCN3-203ENST00000502998 EHMT2Q96KQ7 1210 aa9.81□□□□□ -0.84
CLCN3-203ENST00000502998 TIMELESSQ9UNS1 1208 aa9.81□□□□□ -0.84
CLCN3-203ENST00000502998 MRC2Q9UBG0 1479 aa9.8□□□□□ -0.84
CLCN3-203ENST00000502998 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.8□□□□□ -0.84
CLCN3-203ENST00000502998 HNRNPUL2Q1KMD3 747 aaKnown RBP9.8□□□□□ -0.84
CLCN3-203ENST00000502998 AMER1Q5JTC6 1135 aaPredicted RBP9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms