RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 GAPVD1Q14C86 1478 aa24.13■■□□□ 1.45
MSH5-SAPCD1-208ENST00000498473 APLP2Q06481 763 aa24.13■■□□□ 1.45
MSH5-SAPCD1-208ENST00000498473 ABCA5Q8WWZ7 1642 aa24.11■■□□□ 1.45
MSH5-SAPCD1-208ENST00000498473 ARAP1Q96P48 1450 aa24.11■■□□□ 1.45
MSH5-SAPCD1-208ENST00000498473 ZNF316A6NFI3 1004 aaPredicted RBP24.09■■□□□ 1.45
MSH5-SAPCD1-208ENST00000498473 ACIN1Q9UKV3 1341 aaKnown RBP24.09■■□□□ 1.45
MSH5-SAPCD1-208ENST00000498473 IGF1RP08069 1367 aa24.07■■□□□ 1.44
MSH5-SAPCD1-208ENST00000498473 PBRM1Q86U86 1689 aa24.06■■□□□ 1.44
MSH5-SAPCD1-208ENST00000498473 FBLN2P98095 1184 aa24.06■■□□□ 1.44
MSH5-SAPCD1-208ENST00000498473 NEUROD1Q13562 356 aa24.04■■□□□ 1.44
MSH5-SAPCD1-208ENST00000498473 SNAPC4Q5SXM2 1469 aa24■■□□□ 1.43
MSH5-SAPCD1-208ENST00000498473 GRIN2BQ13224 1484 aa23.96■■□□□ 1.43
MSH5-SAPCD1-208ENST00000498473 CARMIL1Q5VZK9 1371 aa23.94■■□□□ 1.42
MSH5-SAPCD1-208ENST00000498473 KANK4Q5T7N3 995 aaPredicted RBP23.93■■□□□ 1.42
MSH5-SAPCD1-208ENST00000498473 ARHGAP35Q9NRY4 1499 aa23.89■■□□□ 1.41
MSH5-SAPCD1-208ENST00000498473 CENPBP07199 599 aaPredicted RBP23.88■■□□□ 1.41
MSH5-SAPCD1-208ENST00000498473 CHMP7Q8WUX9 453 aaPredicted RBP23.86■■□□□ 1.41
MSH5-SAPCD1-208ENST00000498473 ADAMTS12P58397 1594 aa23.85■■□□□ 1.41
MSH5-SAPCD1-208ENST00000498473 RRBP1Q9P2E9 1410 aaKnown RBP23.84■■□□□ 1.41
MSH5-SAPCD1-208ENST00000498473 DHX57Q6P158 1386 aaKnown RBP23.82■■□□□ 1.4
MSH5-SAPCD1-208ENST00000498473 CHD1O14646 1710 aa23.8■■□□□ 1.4
MSH5-SAPCD1-208ENST00000498473 CUL7Q14999 1698 aa23.8■■□□□ 1.4
MSH5-SAPCD1-208ENST00000498473 CLSPNQ9HAW4 1339 aa23.79■■□□□ 1.4
MSH5-SAPCD1-208ENST00000498473 FHAD1B1AJZ9 1412 aa23.78■■□□□ 1.4
MSH5-SAPCD1-208ENST00000498473 GTF3C3Q9Y5Q9 886 aa23.77■■□□□ 1.4
MSH5-SAPCD1-208ENST00000498473 MAGI1Q96QZ7 1491 aaPredicted RBP23.77■■□□□ 1.4
MSH5-SAPCD1-208ENST00000498473 SYNJ2O15056 1496 aa23.74■■□□□ 1.39
MSH5-SAPCD1-208ENST00000498473 MIER1Q8N108 512 aa23.74■■□□□ 1.39
MSH5-SAPCD1-208ENST00000498473 GRIN2AQ12879 1464 aa23.72■■□□□ 1.39
MSH5-SAPCD1-208ENST00000498473 CCNB3Q8WWL7 1395 aa23.69■■□□□ 1.38
MSH5-SAPCD1-208ENST00000498473 CEP170Q5SW79 1584 aa23.66■■□□□ 1.38
MSH5-SAPCD1-208ENST00000498473 MAP3K1Q13233 1512 aa23.65■■□□□ 1.38
MSH5-SAPCD1-208ENST00000498473 TIAM1Q13009 1591 aa23.64■■□□□ 1.38
MSH5-SAPCD1-208ENST00000498473 P3H3Q8IVL6 736 aa23.63■■□□□ 1.37
MSH5-SAPCD1-208ENST00000498473 YTHDC1Q96MU7 727 aaKnown RBP23.59■■□□□ 1.37
MSH5-SAPCD1-208ENST00000498473 CTTNBP2Q8WZ74 1663 aa23.57■■□□□ 1.36
MSH5-SAPCD1-208ENST00000498473 LRRC9Q6ZRR7 1453 aa23.53■■□□□ 1.36
MSH5-SAPCD1-208ENST00000498473 NUP160Q12769 1436 aa23.5■■□□□ 1.35
MSH5-SAPCD1-208ENST00000498473 CFAP43Q8NDM7 1665 aa23.5■■□□□ 1.35
MSH5-SAPCD1-208ENST00000498473 ITGAEP38570 1179 aa23.49■■□□□ 1.35
MSH5-SAPCD1-208ENST00000498473 OSCARQ8IYS5 282 aa23.49■■□□□ 1.35
MSH5-SAPCD1-208ENST00000498473 PCF11O94913 1555 aaKnown RBP23.47■■□□□ 1.35
MSH5-SAPCD1-208ENST00000498473 RAB3GAP2Q9H2M9 1393 aa23.47■■□□□ 1.35
MSH5-SAPCD1-208ENST00000498473 IQGAP2Q13576 1575 aa23.47■■□□□ 1.35
MSH5-SAPCD1-208ENST00000498473 PHLDB1Q86UU1 1377 aa23.46■■□□□ 1.35
MSH5-SAPCD1-208ENST00000498473 JPH4Q96JJ6 628 aa23.44■■□□□ 1.34
MSH5-SAPCD1-208ENST00000498473 MAPKBP1O60336 1514 aa23.44■■□□□ 1.34
MSH5-SAPCD1-208ENST00000498473 KIAA0586Q9BVV6 1533 aa23.44■■□□□ 1.34
MSH5-SAPCD1-208ENST00000498473 ERCC6L2Q5T890 1561 aa23.42■■□□□ 1.34
MSH5-SAPCD1-208ENST00000498473 FHOD3Q2V2M9 1422 aa23.39■■□□□ 1.33
MSH5-SAPCD1-208ENST00000498473 SETD5Q9C0A6 1442 aa23.39■■□□□ 1.33
MSH5-SAPCD1-208ENST00000498473 EFCAB5A4FU69 1503 aa23.38■■□□□ 1.33
MSH5-SAPCD1-208ENST00000498473 CLASP1Q7Z460 1538 aa23.37■■□□□ 1.33
MSH5-SAPCD1-208ENST00000498473 FYCO1Q9BQS8 1478 aa23.35■■□□□ 1.33
MSH5-SAPCD1-208ENST00000498473 PRG4Q92954 1404 aaPredicted RBP23.34■■□□□ 1.33
MSH5-SAPCD1-208ENST00000498473 CASKIN1Q8WXD9 1431 aa23.33■■□□□ 1.33
MSH5-SAPCD1-208ENST00000498473 ARID3CA6NKF2 412 aa23.33■■□□□ 1.33
MSH5-SAPCD1-208ENST00000498473 DISP1Q96F81 1524 aa23.31■■□□□ 1.32
MSH5-SAPCD1-208ENST00000498473 ATP1B4Q9UN42 357 aaPredicted RBP23.3■■□□□ 1.32
MSH5-SAPCD1-208ENST00000498473 FAM50AQ14320 339 aaKnown RBP23.29■■□□□ 1.32
MSH5-SAPCD1-208ENST00000498473 UGGT2Q9NYU1 1516 aa23.26■■□□□ 1.31
MSH5-SAPCD1-208ENST00000498473 KIAA0556O60303 1618 aa23.25■■□□□ 1.31
MSH5-SAPCD1-208ENST00000498473 SAMD9Q5K651 1589 aa23.24■■□□□ 1.31
MSH5-SAPCD1-208ENST00000498473 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.24■■□□□ 1.31
MSH5-SAPCD1-208ENST00000498473 SHROOM2Q13796 1616 aa23.24■■□□□ 1.31
MSH5-SAPCD1-208ENST00000498473 FMN1Q68DA7 1419 aa23.2■■□□□ 1.3
MSH5-SAPCD1-208ENST00000498473 SIN3AQ96ST3 1273 aa23.18■■□□□ 1.3
MSH5-SAPCD1-208ENST00000498473 LRRIQ1Q96JM4 1722 aa23.16■■□□□ 1.3
MSH5-SAPCD1-208ENST00000498473 CARMIL2Q6F5E8 1435 aa23.16■■□□□ 1.3
MSH5-SAPCD1-208ENST00000498473 FGD6Q6ZV73 1430 aa23.14■■□□□ 1.29
MSH5-SAPCD1-208ENST00000498473 ARHGEF11O15085 1522 aa23.14■■□□□ 1.29
MSH5-SAPCD1-208ENST00000498473 PLB1Q6P1J6 1458 aa23.13■■□□□ 1.29
MSH5-SAPCD1-208ENST00000498473 CYB5RLQ6IPT4 315 aa23.1■■□□□ 1.29
MSH5-SAPCD1-208ENST00000498473 TIMELESSQ9UNS1 1208 aa23.09■■□□□ 1.29
MSH5-SAPCD1-208ENST00000498473 PTPRGP23470 1445 aa23.09■■□□□ 1.29
MSH5-SAPCD1-208ENST00000498473 RIMBP3CA6NJZ7 1639 aa23.09■■□□□ 1.29
MSH5-SAPCD1-208ENST00000498473 RIMBP3BA6NNM3 1639 aa23.09■■□□□ 1.29
MSH5-SAPCD1-208ENST00000498473 RIMBP3Q9UFD9 1639 aa23.09■■□□□ 1.29
MSH5-SAPCD1-208ENST00000498473 MTUS2Q5JR59 1369 aa23.06■■□□□ 1.28
MSH5-SAPCD1-208ENST00000498473 PTPRKQ15262 1439 aa23.05■■□□□ 1.28
MSH5-SAPCD1-208ENST00000498473 NCOA2Q15596 1464 aa23.02■■□□□ 1.28
MSH5-SAPCD1-208ENST00000498473 PPP1R15AO75807 674 aaPredicted RBP23.01■■□□□ 1.27
MSH5-SAPCD1-208ENST00000498473 CCDC18Q5T9S5 1454 aa23■■□□□ 1.27
MSH5-SAPCD1-208ENST00000498473 HFM1A2PYH4 1435 aa23■■□□□ 1.27
MSH5-SAPCD1-208ENST00000498473 PTPN23Q9H3S7 1636 aa23■■□□□ 1.27
MSH5-SAPCD1-208ENST00000498473 KCNH8Q96L42 1107 aa23■■□□□ 1.27
MSH5-SAPCD1-208ENST00000498473 SUPT6HQ7KZ85 1726 aaKnown RBP22.99■■□□□ 1.27
MSH5-SAPCD1-208ENST00000498473 MYOM3Q5VTT5 1437 aa22.99■■□□□ 1.27
MSH5-SAPCD1-208ENST00000498473 CDK13Q14004 1512 aaKnown RBP22.98■■□□□ 1.27
MSH5-SAPCD1-208ENST00000498473 EHBP1L1Q8N3D4 1523 aa22.97■■□□□ 1.27
MSH5-SAPCD1-208ENST00000498473 RAPGEF6Q8TEU7 1601 aa22.96■■□□□ 1.27
MSH5-SAPCD1-208ENST00000498473 UACAQ9BZF9 1416 aa22.95■■□□□ 1.27
MSH5-SAPCD1-208ENST00000498473 DDX10Q13206 875 aaKnown RBP22.95■■□□□ 1.26
MSH5-SAPCD1-208ENST00000498473 SUPT16HQ9Y5B9 1047 aaKnown RBP22.94■■□□□ 1.26
MSH5-SAPCD1-208ENST00000498473 MAGI3Q5TCQ9 1506 aa22.94■■□□□ 1.26
MSH5-SAPCD1-208ENST00000498473 NAIPQ13075 1403 aa22.94■■□□□ 1.26
MSH5-SAPCD1-208ENST00000498473 NUP153P49790 1475 aaKnown RBP22.93■■□□□ 1.26
MSH5-SAPCD1-208ENST00000498473 ABCA8O94911 1581 aa22.91■■□□□ 1.26
MSH5-SAPCD1-208ENST00000498473 DNAJC5Q9H3Z4 198 aa22.9■■□□□ 1.26
MSH5-SAPCD1-208ENST00000498473 ADCY10Q96PN6 1610 aa22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms