RNA–Protein interactions for RNA: ENST00000494458.1

MSH5-217, Transcript of mutS homolog 5, humanhuman

TSL 2

Gene MSH5, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-217ENST00000494458 TDRD9Q8NDG6 1382 aaKnown RBP10.86□□□□□ -0.67
MSH5-217ENST00000494458 ERCC6Q03468 1493 aa10.86□□□□□ -0.67
MSH5-217ENST00000494458 PPP4R3CPQ6ZMV5 832 aa10.85□□□□□ -0.67
MSH5-217ENST00000494458 CUL7Q14999 1698 aa10.84□□□□□ -0.67
MSH5-217ENST00000494458 RNF216Q9NWF9 866 aaPredicted RBP10.81□□□□□ -0.68
MSH5-217ENST00000494458 CLIP1P30622 1438 aa10.81□□□□□ -0.68
MSH5-217ENST00000494458 EHMT2Q96KQ7 1210 aa10.8□□□□□ -0.68
MSH5-217ENST00000494458 AQRO60306 1485 aaKnown RBP eCLIP10.8□□□□□ -0.68
MSH5-217ENST00000494458 GRIN2BQ13224 1484 aa10.8□□□□□ -0.68
MSH5-217ENST00000494458 ZNF608Q9ULD9 1512 aaPredicted RBP10.79□□□□□ -0.68
MSH5-217ENST00000494458 FHAD1B1AJZ9 1412 aa10.78□□□□□ -0.68
MSH5-217ENST00000494458 CNKSR2Q8WXI2 1034 aa10.77□□□□□ -0.69
MSH5-217ENST00000494458 VPS8Q8N3P4 1428 aa10.75□□□□□ -0.69
MSH5-217ENST00000494458 ARHGAP35Q9NRY4 1499 aa10.74□□□□□ -0.69
MSH5-217ENST00000494458 ADAMTS12P58397 1594 aa10.73□□□□□ -0.69
MSH5-217ENST00000494458 PBRM1Q86U86 1689 aa10.73□□□□□ -0.69
MSH5-217ENST00000494458 ARAP1Q96P48 1450 aa10.73□□□□□ -0.69
MSH5-217ENST00000494458 MAGI1Q96QZ7 1491 aaPredicted RBP10.72□□□□□ -0.69
MSH5-217ENST00000494458 EIF4G3O43432 1585 aaKnown RBP10.72□□□□□ -0.69
MSH5-217ENST00000494458 TRIM26Q12899 539 aaPredicted RBP10.68□□□□□ -0.7
MSH5-217ENST00000494458 EFCAB5A4FU69 1503 aa10.68□□□□□ -0.7
MSH5-217ENST00000494458 SNAPC4Q5SXM2 1469 aa10.68□□□□□ -0.7
MSH5-217ENST00000494458 SYNJ2O15056 1496 aa10.67□□□□□ -0.7
MSH5-217ENST00000494458 CTTNBP2Q8WZ74 1663 aa10.66□□□□□ -0.7
MSH5-217ENST00000494458 GRIN2AQ12879 1464 aa10.66□□□□□ -0.7
MSH5-217ENST00000494458 KIAA0586Q9BVV6 1533 aa10.65□□□□□ -0.7
MSH5-217ENST00000494458 NUP160Q12769 1436 aa10.65□□□□□ -0.7
MSH5-217ENST00000494458 SAMD9Q5K651 1589 aa10.65□□□□□ -0.71
MSH5-217ENST00000494458 MAP3K1Q13233 1512 aa10.64□□□□□ -0.71
MSH5-217ENST00000494458 UGGT2Q9NYU1 1516 aa10.63□□□□□ -0.71
MSH5-217ENST00000494458 POTEHQ6S545 545 aa10.61□□□□□ -0.71
MSH5-217ENST00000494458 IQGAP2Q13576 1575 aa10.6□□□□□ -0.71
MSH5-217ENST00000494458 FMN1Q68DA7 1419 aa10.58□□□□□ -0.72
MSH5-217ENST00000494458 CASKIN1Q8WXD9 1431 aa10.58□□□□□ -0.72
MSH5-217ENST00000494458 CHMP7Q8WUX9 453 aaPredicted RBP10.58□□□□□ -0.72
MSH5-217ENST00000494458 PCGF6Q9BYE7 350 aa10.58□□□□□ -0.72
MSH5-217ENST00000494458 CEP170Q5SW79 1584 aa10.57□□□□□ -0.72
MSH5-217ENST00000494458 DISP1Q96F81 1524 aa10.56□□□□□ -0.72
MSH5-217ENST00000494458 FHOD3Q2V2M9 1422 aa10.56□□□□□ -0.72
MSH5-217ENST00000494458 FYCO1Q9BQS8 1478 aa10.55□□□□□ -0.72
MSH5-217ENST00000494458 RANGAP1P46060 587 aaPredicted RBP10.55□□□□□ -0.72
MSH5-217ENST00000494458 KANK4Q5T7N3 995 aaPredicted RBP10.53□□□□□ -0.72
MSH5-217ENST00000494458 JPH4Q96JJ6 628 aa10.52□□□□□ -0.73
MSH5-217ENST00000494458 TIAM1Q13009 1591 aa10.52□□□□□ -0.73
MSH5-217ENST00000494458 APLP2Q06481 763 aa10.51□□□□□ -0.73
MSH5-217ENST00000494458 KIAA0556O60303 1618 aa10.51□□□□□ -0.73
MSH5-217ENST00000494458 PPARGC1BQ86YN6 1023 aaKnown RBP10.5□□□□□ -0.73
MSH5-217ENST00000494458 P3H3Q8IVL6 736 aa10.5□□□□□ -0.73
MSH5-217ENST00000494458 PCF11O94913 1555 aaKnown RBP10.5□□□□□ -0.73
MSH5-217ENST00000494458 LRRC9Q6ZRR7 1453 aa10.49□□□□□ -0.73
MSH5-217ENST00000494458 SHROOM2Q13796 1616 aa10.47□□□□□ -0.73
MSH5-217ENST00000494458 RRBP1Q9P2E9 1410 aaKnown RBP10.47□□□□□ -0.73
MSH5-217ENST00000494458 CFAP43Q8NDM7 1665 aa10.47□□□□□ -0.73
MSH5-217ENST00000494458 FBLN2P98095 1184 aa10.46□□□□□ -0.73
MSH5-217ENST00000494458 CARMIL2Q6F5E8 1435 aa10.46□□□□□ -0.74
MSH5-217ENST00000494458 CLASP1Q7Z460 1538 aa10.45□□□□□ -0.74
MSH5-217ENST00000494458 CHD1O14646 1710 aa10.44□□□□□ -0.74
MSH5-217ENST00000494458 CCDC18Q5T9S5 1454 aa10.44□□□□□ -0.74
MSH5-217ENST00000494458 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.44□□□□□ -0.743e-12■■□□□ 11.9
MSH5-217ENST00000494458 EPRSP07814 1512 aaKnown RBP10.43□□□□□ -0.74
MSH5-217ENST00000494458 ARHGEF11O15085 1522 aa10.42□□□□□ -0.74
MSH5-217ENST00000494458 NUP153P49790 1475 aaKnown RBP10.42□□□□□ -0.74
MSH5-217ENST00000494458 PRG4Q92954 1404 aaPredicted RBP10.41□□□□□ -0.74
MSH5-217ENST00000494458 LRRIQ1Q96JM4 1722 aa10.41□□□□□ -0.74
MSH5-217ENST00000494458 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.41□□□□□ -0.74
MSH5-217ENST00000494458 HECW1Q76N89 1606 aa10.41□□□□□ -0.74
MSH5-217ENST00000494458 ABCA8O94911 1581 aa10.4□□□□□ -0.74
MSH5-217ENST00000494458 PHLDB1Q86UU1 1377 aa10.39□□□□□ -0.75
MSH5-217ENST00000494458 MAGI3Q5TCQ9 1506 aa10.38□□□□□ -0.75
MSH5-217ENST00000494458 RAPGEF6Q8TEU7 1601 aa10.38□□□□□ -0.75
MSH5-217ENST00000494458 CCNB3Q8WWL7 1395 aa10.38□□□□□ -0.75
MSH5-217ENST00000494458 PTPRGP23470 1445 aa10.37□□□□□ -0.75
MSH5-217ENST00000494458 EHBP1L1Q8N3D4 1523 aa10.37□□□□□ -0.75
MSH5-217ENST00000494458 PLB1Q6P1J6 1458 aa10.36□□□□□ -0.75
MSH5-217ENST00000494458 HRCP23327 699 aa10.36□□□□□ -0.75
MSH5-217ENST00000494458 MTUS2Q5JR59 1369 aa10.35□□□□□ -0.75
MSH5-217ENST00000494458 ATP10BO94823 1461 aa10.34□□□□□ -0.75
MSH5-217ENST00000494458 NCOA2Q15596 1464 aa10.34□□□□□ -0.75
MSH5-217ENST00000494458 TTBK1Q5TCY1 1321 aaPredicted RBP10.33□□□□□ -0.76
MSH5-217ENST00000494458 CDK13Q14004 1512 aaKnown RBP10.33□□□□□ -0.76
MSH5-217ENST00000494458 UHRF1BP1LA0JNW5 1464 aa10.33□□□□□ -0.76
MSH5-217ENST00000494458 UACAQ9BZF9 1416 aa10.33□□□□□ -0.76
MSH5-217ENST00000494458 ERCC6L2Q5T890 1561 aa10.32□□□□□ -0.76
MSH5-217ENST00000494458 OSCARQ8IYS5 282 aa10.32□□□□□ -0.76
MSH5-217ENST00000494458 ATP1B4Q9UN42 357 aaPredicted RBP10.32□□□□□ -0.76
MSH5-217ENST00000494458 CDK11AQ9UQ88 783 aaPredicted RBP10.32□□□□□ -0.76
MSH5-217ENST00000494458 MYOM3Q5VTT5 1437 aa10.32□□□□□ -0.76
MSH5-217ENST00000494458 FGD6Q6ZV73 1430 aa10.32□□□□□ -0.76
MSH5-217ENST00000494458 DSG3P32926 999 aa10.31□□□□□ -0.76
MSH5-217ENST00000494458 TROQ12816 1431 aaPredicted RBP10.31□□□□□ -0.76
MSH5-217ENST00000494458 MIA2Q96PC5 1412 aa10.31□□□□□ -0.76
MSH5-217ENST00000494458 TCOF1Q13428 1488 aaKnown RBP10.3□□□□□ -0.76
MSH5-217ENST00000494458 SUPT6HQ7KZ85 1726 aaKnown RBP10.3□□□□□ -0.76
MSH5-217ENST00000494458 ABCC2Q92887 1545 aa10.28□□□□□ -0.76
MSH5-217ENST00000494458 ADCY10Q96PN6 1610 aa10.28□□□□□ -0.76
MSH5-217ENST00000494458 KDM5BQ9UGL1 1544 aa10.27□□□□□ -0.77
MSH5-217ENST00000494458 ABCC10Q5T3U5 1492 aa10.26□□□□□ -0.77
MSH5-217ENST00000494458 ZEB1P37275 1124 aaPredicted RBP10.26□□□□□ -0.77
MSH5-217ENST00000494458 PLEKHD1A6NEE1 506 aa10.25□□□□□ -0.77
MSH5-217ENST00000494458 HNRNPUL2Q1KMD3 747 aaKnown RBP10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms