RNA–Protein interactions for RNA: ENST00000492606.1

UBR4-215, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-215ENST00000492606 ABCC10Q5T3U5 1492 aa8.9□□□□□ -0.98
UBR4-215ENST00000492606 ZCCHC6Q5VYS8 1495 aaKnown RBP8.9□□□□□ -0.98
UBR4-215ENST00000492606 TSPOAP1O95153 1857 aa8.89□□□□□ -0.99
UBR4-215ENST00000492606 ATF5Q9Y2D1 282 aaPredicted RBP8.89□□□□□ -0.99
UBR4-215ENST00000492606 DIP2BQ9P265 1576 aa8.86□□□□□ -0.99
UBR4-215ENST00000492606 DCAF8L1A6NGE4 600 aa8.84□□□□□ -0.99
UBR4-215ENST00000492606 SYNJ1O43426 1573 aa8.84□□□□□ -0.99
UBR4-215ENST00000492606 U3KPZ7 1027 aaPredicted RBP8.84□□□□□ -0.99
UBR4-215ENST00000492606 PEG3Q9GZU2 1588 aa8.82□□□□□ -1
UBR4-215ENST00000492606 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.81□□□□□ -13e-8■■□□□ 12.5
UBR4-215ENST00000492606 TOP2BQ02880 1626 aa8.8□□□□□ -1
UBR4-215ENST00000492606 PCF11O94913 1555 aaKnown RBP8.77□□□□□ -1.01
UBR4-215ENST00000492606 SNAPC4Q5SXM2 1469 aa8.77□□□□□ -1.01
UBR4-215ENST00000492606 COL17A1Q9UMD9 1497 aaPredicted RBP8.77□□□□□ -1.01
UBR4-215ENST00000492606 TARBP1Q13395 1621 aaKnown RBP8.74□□□□□ -1.01
UBR4-215ENST00000492606 CHMP7Q8WUX9 453 aaPredicted RBP8.74□□□□□ -1.01
UBR4-215ENST00000492606 SRCAPQ6ZRS2 3230 aa8.73□□□□□ -1.01
UBR4-215ENST00000492606 HSPA2P54652 639 aa8.73□□□□□ -1.01
UBR4-215ENST00000492606 CFTRP13569 1480 aa8.72□□□□□ -1.01
UBR4-215ENST00000492606 MAPKBP1O60336 1514 aa8.72□□□□□ -1.01
UBR4-215ENST00000492606 MED1Q15648 1581 aaPredicted RBP8.72□□□□□ -1.01
UBR4-215ENST00000492606 FKBP8Q14318 412 aa8.71□□□□□ -1.02
UBR4-215ENST00000492606 PPRC1Q5VV67 1664 aaKnown RBP8.7□□□□□ -1.02
UBR4-215ENST00000492606 IFFO2Q5TF58 517 aa8.7□□□□□ -1.02
UBR4-215ENST00000492606 TOPBP1Q92547 1522 aa8.7□□□□□ -1.02
UBR4-215ENST00000492606 SAMD1Q6SPF0 538 aaPredicted RBP8.69□□□□□ -1.02
UBR4-215ENST00000492606 PTPRMP28827 1452 aa8.69□□□□□ -1.02
UBR4-215ENST00000492606 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.67□□□□□ -1.02
UBR4-215ENST00000492606 HNRNPUL2Q1KMD3 747 aaKnown RBP8.67□□□□□ -1.02
UBR4-215ENST00000492606 MROH2BQ7Z745 1585 aa8.66□□□□□ -1.02
UBR4-215ENST00000492606 CEP170Q5SW79 1584 aa8.65□□□□□ -1.02
UBR4-215ENST00000492606 TDRD9Q8NDG6 1382 aaKnown RBP8.63□□□□□ -1.03
UBR4-215ENST00000492606 RTN4Q9NQC3 1192 aaKnown RBP8.61□□□□□ -1.03
UBR4-215ENST00000492606 MAGI1Q96QZ7 1491 aaPredicted RBP8.6□□□□□ -1.03
UBR4-215ENST00000492606 NPM1P06748 294 aaKnown RBP eCLIP8.6□□□□□ -1.03
UBR4-215ENST00000492606 KIF21BO75037 1637 aa8.59□□□□□ -1.03
UBR4-215ENST00000492606 ZNF219Q9P2Y4 722 aaPredicted RBP8.59□□□□□ -1.03
UBR4-215ENST00000492606 ADAMTSL3P82987 1691 aa8.59□□□□□ -1.03
UBR4-215ENST00000492606 RAD54L2Q9Y4B4 1467 aa8.57□□□□□ -1.04
UBR4-215ENST00000492606 ADCY10Q96PN6 1610 aa8.55□□□□□ -1.04
UBR4-215ENST00000492606 SHROOM2Q13796 1616 aa8.54□□□□□ -1.04
UBR4-215ENST00000492606 DNMBPQ6XZF7 1577 aa8.52□□□□□ -1.04
UBR4-215ENST00000492606 POLA1P09884 1462 aaPredicted RBP8.52□□□□□ -1.05
UBR4-215ENST00000492606 LTBP4Q8N2S1 1624 aa8.52□□□□□ -1.05
UBR4-215ENST00000492606 HSPA1LP34931 641 aa8.51□□□□□ -1.05
UBR4-215ENST00000492606 MKRN4PQ13434 485 aaPredicted RBP8.51□□□□□ -1.05
UBR4-215ENST00000492606 RGS17Q9UGC6 210 aaPredicted RBP8.51□□□□□ -1.05
UBR4-215ENST00000492606 PRDM2Q13029 1718 aa8.51□□□□□ -1.05
UBR4-215ENST00000492606 AMER1Q5JTC6 1135 aaPredicted RBP8.5□□□□□ -1.05
UBR4-215ENST00000492606 IQSEC2Q5JU85 1478 aa8.5□□□□□ -1.05
UBR4-215ENST00000492606 STRCQ7RTU9 1775 aa8.49□□□□□ -1.05
UBR4-215ENST00000492606 RNF39Q9H2S5 420 aa8.49□□□□□ -1.05
UBR4-215ENST00000492606 SPINK5Q9NQ38 1064 aaPredicted RBP8.49□□□□□ -1.05
UBR4-215ENST00000492606 MADDQ8WXG6 1647 aa8.49□□□□□ -1.05
UBR4-215ENST00000492606 GRIN2BQ13224 1484 aa8.49□□□□□ -1.05
UBR4-215ENST00000492606 GLI2P10070 1586 aa8.48□□□□□ -1.05
UBR4-215ENST00000492606 ABCC8Q09428 1581 aa8.48□□□□□ -1.05
UBR4-215ENST00000492606 UBAP1LF5GYI3 381 aa8.47□□□□□ -1.05
UBR4-215ENST00000492606 PRG4Q92954 1404 aaPredicted RBP8.46□□□□□ -1.06
UBR4-215ENST00000492606 POTEDQ86YR6 584 aa8.45□□□□□ -1.06
UBR4-215ENST00000492606 SETD1AO15047 1707 aaKnown RBP8.45□□□□□ -1.06
UBR4-215ENST00000492606 SOGA1O94964 1423 aa8.45□□□□□ -1.06
UBR4-215ENST00000492606 APLP2Q06481 763 aa8.44□□□□□ -1.06
UBR4-215ENST00000492606 PTPRTO14522 1441 aa8.43□□□□□ -1.06
UBR4-215ENST00000492606 NUP160Q12769 1436 aa8.43□□□□□ -1.06
UBR4-215ENST00000492606 WDR97A6NE52 1622 aa8.43□□□□□ -1.06
UBR4-215ENST00000492606 YEATS2Q9ULM3 1422 aa8.42□□□□□ -1.06
UBR4-215ENST00000492606 RIMS1Q86UR5 1692 aaKnown RBP8.42□□□□□ -1.06
UBR4-215ENST00000492606 BCORL1Q5H9F3 1711 aa8.42□□□□□ -1.06
UBR4-215ENST00000492606 WIZO95785 1651 aa8.41□□□□□ -1.06
UBR4-215ENST00000492606 MAP3K4Q9Y6R4 1608 aa8.41□□□□□ -1.06
UBR4-215ENST00000492606 PBRM1Q86U86 1689 aa8.4□□□□□ -1.06
UBR4-215ENST00000492606 GRIN2AQ12879 1464 aa8.39□□□□□ -1.07
UBR4-215ENST00000492606 TEX14Q8IWB6 1497 aa8.39□□□□□ -1.07
UBR4-215ENST00000492606 POTEAQ6S8J7 498 aa8.39□□□□□ -1.07
UBR4-215ENST00000492606 PROM2Q8N271 834 aa8.39□□□□□ -1.07
UBR4-215ENST00000492606 UPF1Q92900 1129 aaKnown RBP eCLIP8.38□□□□□ -1.07
UBR4-215ENST00000492606 POLA2Q14181 598 aa8.37□□□□□ -1.07
UBR4-215ENST00000492606 ASXL2Q76L83 1435 aa8.37□□□□□ -1.07
UBR4-215ENST00000492606 SPDYE4A6NLX3 237 aa8.35□□□□□ -1.07
UBR4-215ENST00000492606 C1QBPQ07021 282 aaKnown RBP8.34□□□□□ -1.07
UBR4-215ENST00000492606 JPH4Q96JJ6 628 aa8.34□□□□□ -1.07
UBR4-215ENST00000492606 PLB1Q6P1J6 1458 aa8.33□□□□□ -1.08
UBR4-215ENST00000492606 EPRSP07814 1512 aaKnown RBP8.32□□□□□ -1.08
UBR4-215ENST00000492606 CFAP43Q8NDM7 1665 aa8.31□□□□□ -1.08
UBR4-215ENST00000492606 KIAA0586Q9BVV6 1533 aa8.31□□□□□ -1.08
UBR4-215ENST00000492606 CAPN15O75808 1086 aa8.31□□□□□ -1.08
UBR4-215ENST00000492606 PIP4K2BP78356 416 aa8.31□□□□□ -1.08
UBR4-215ENST00000492606 FGD5Q6ZNL6 1462 aa8.29□□□□□ -1.08
UBR4-215ENST00000492606 ARID4BQ4LE39 1312 aaPredicted RBP8.28□□□□□ -1.08
UBR4-215ENST00000492606 PREX1Q8TCU6 1659 aa8.27□□□□□ -1.08
UBR4-215ENST00000492606 ABCC2Q92887 1545 aa8.26□□□□□ -1.09
UBR4-215ENST00000492606 SLC24A1O60721 1099 aa8.26□□□□□ -1.09
UBR4-215ENST00000492606 CUL7Q14999 1698 aa8.26□□□□□ -1.09
UBR4-215ENST00000492606 ZNF335Q9H4Z2 1342 aaPredicted RBP8.26□□□□□ -1.09
UBR4-215ENST00000492606 ADAMTS12P58397 1594 aa8.25□□□□□ -1.09
UBR4-215ENST00000492606 ABCB7O75027 752 aa8.24□□□□□ -1.09
UBR4-215ENST00000492606 RBM33Q96EV2 1170 aaKnown RBP8.23□□□□□ -1.09
UBR4-215ENST00000492606 ABCA5Q8WWZ7 1642 aa8.22□□□□□ -1.09
UBR4-215ENST00000492606 SETBP1Q9Y6X0 1596 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms