RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 ARAP1Q96P48 1450 aa16.7■□□□□ 0.26
USP4-214ENST00000491791 SNAPC4Q5SXM2 1469 aa16.69■□□□□ 0.26
USP4-214ENST00000491791 ABCA10Q8WWZ4 1543 aa16.69■□□□□ 0.26
USP4-214ENST00000491791 MAGI1Q96QZ7 1491 aaPredicted RBP16.67■□□□□ 0.26
USP4-214ENST00000491791 ZEB1P37275 1124 aaPredicted RBP16.66■□□□□ 0.26
USP4-214ENST00000491791 GRIN2BQ13224 1484 aa16.66■□□□□ 0.26
USP4-214ENST00000491791 SYNJ2O15056 1496 aa16.61■□□□□ 0.25
USP4-214ENST00000491791 CLASP1Q7Z460 1538 aa16.61■□□□□ 0.25
USP4-214ENST00000491791 CARMIL1Q5VZK9 1371 aa16.58■□□□□ 0.24
USP4-214ENST00000491791 GAPVD1Q14C86 1478 aa16.58■□□□□ 0.24
USP4-214ENST00000491791 CUL7Q14999 1698 aa16.56■□□□□ 0.24
USP4-214ENST00000491791 PBRM1Q86U86 1689 aa16.53■□□□□ 0.24
USP4-214ENST00000491791 ARHGAP35Q9NRY4 1499 aa16.52■□□□□ 0.23
USP4-214ENST00000491791 ABCA5Q8WWZ7 1642 aa16.51■□□□□ 0.23
USP4-214ENST00000491791 MAP3K1Q13233 1512 aa16.49■□□□□ 0.23
USP4-214ENST00000491791 PPARGC1BQ86YN6 1023 aaKnown RBP16.48■□□□□ 0.23
USP4-214ENST00000491791 APLP2Q06481 763 aa16.43■□□□□ 0.22
USP4-214ENST00000491791 GRIN2AQ12879 1464 aa16.42■□□□□ 0.22
USP4-214ENST00000491791 EFCAB5A4FU69 1503 aa16.42■□□□□ 0.22
USP4-214ENST00000491791 ADAMTS12P58397 1594 aa16.38■□□□□ 0.21
USP4-214ENST00000491791 FHAD1B1AJZ9 1412 aa16.37■□□□□ 0.21
USP4-214ENST00000491791 CTTNBP2Q8WZ74 1663 aa16.37■□□□□ 0.21
USP4-214ENST00000491791 NUP160Q12769 1436 aa16.36■□□□□ 0.21
USP4-214ENST00000491791 AEBP2Q6ZN18 517 aaPredicted RBP16.35■□□□□ 0.21
USP4-214ENST00000491791 RRBP1Q9P2E9 1410 aaKnown RBP16.33■□□□□ 0.2
USP4-214ENST00000491791 CEP170Q5SW79 1584 aa16.33■□□□□ 0.2
USP4-214ENST00000491791 TIAM1Q13009 1591 aa16.3■□□□□ 0.2
USP4-214ENST00000491791 ERCC6L2Q5T890 1561 aa16.3■□□□□ 0.2
USP4-214ENST00000491791 SAMD9Q5K651 1589 aa16.29■□□□□ 0.2
USP4-214ENST00000491791 SHROOM2Q13796 1616 aa16.28■□□□□ 0.2
USP4-214ENST00000491791 FYCO1Q9BQS8 1478 aa16.27■□□□□ 0.19
USP4-214ENST00000491791 CFAP43Q8NDM7 1665 aa16.27■□□□□ 0.19
USP4-214ENST00000491791 CASKIN1Q8WXD9 1431 aa16.27■□□□□ 0.19
USP4-214ENST00000491791 KANK4Q5T7N3 995 aaPredicted RBP16.26■□□□□ 0.19
USP4-214ENST00000491791 RANGAP1P46060 587 aaPredicted RBP16.25■□□□□ 0.19
USP4-214ENST00000491791 CCER1Q8TC90 406 aaPredicted RBP16.24■□□□□ 0.19
USP4-214ENST00000491791 FMN1Q68DA7 1419 aa16.24■□□□□ 0.19
USP4-214ENST00000491791 PRG4Q92954 1404 aaPredicted RBP16.24■□□□□ 0.19
USP4-214ENST00000491791 LRRC9Q6ZRR7 1453 aa16.23■□□□□ 0.19
USP4-214ENST00000491791 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.23■□□□□ 0.19
USP4-214ENST00000491791 JPH4Q96JJ6 628 aa16.23■□□□□ 0.19
USP4-214ENST00000491791 PCF11O94913 1555 aaKnown RBP16.21■□□□□ 0.18
USP4-214ENST00000491791 TTBK1Q5TCY1 1321 aaPredicted RBP16.2■□□□□ 0.18
USP4-214ENST00000491791 NPM1P06748 294 aaKnown RBP eCLIP16.19■□□□□ 0.18
USP4-214ENST00000491791 FHOD3Q2V2M9 1422 aa16.17■□□□□ 0.18
USP4-214ENST00000491791 CCNB3Q8WWL7 1395 aa16.16■□□□□ 0.18
USP4-214ENST00000491791 CLSPNQ9HAW4 1339 aa16.16■□□□□ 0.18
USP4-214ENST00000491791 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.14■□□□□ 0.17
USP4-214ENST00000491791 UGGT2Q9NYU1 1516 aa16.13■□□□□ 0.17
USP4-214ENST00000491791 IQGAP2Q13576 1575 aa16.13■□□□□ 0.17
USP4-214ENST00000491791 FAM69CQ0P6D2 419 aa16.11■□□□□ 0.17
USP4-214ENST00000491791 KIF13AQ9H1H9 1805 aa16.1■□□□□ 0.17
USP4-214ENST00000491791 HNRNPUL2Q1KMD3 747 aaKnown RBP16.1■□□□□ 0.17
USP4-214ENST00000491791 KIAA0586Q9BVV6 1533 aa16.09■□□□□ 0.17
USP4-214ENST00000491791 ABCC10Q5T3U5 1492 aa16.08■□□□□ 0.16
USP4-214ENST00000491791 MAPKBP1O60336 1514 aa16.07■□□□□ 0.16
USP4-214ENST00000491791 PHLDB1Q86UU1 1377 aa16.05■□□□□ 0.16
USP4-214ENST00000491791 CCDC18Q5T9S5 1454 aa16.04■□□□□ 0.16
USP4-214ENST00000491791 P3H3Q8IVL6 736 aa16.03■□□□□ 0.16
USP4-214ENST00000491791 ADCY10Q96PN6 1610 aa16.03■□□□□ 0.16
USP4-214ENST00000491791 LRRIQ1Q96JM4 1722 aa16.02■□□□□ 0.16
USP4-214ENST00000491791 DHX57Q6P158 1386 aaKnown RBP16■□□□□ 0.15
USP4-214ENST00000491791 DIP2BQ9P265 1576 aa16■□□□□ 0.15
USP4-214ENST00000491791 EHBP1L1Q8N3D4 1523 aa16■□□□□ 0.15
USP4-214ENST00000491791 HECW1Q76N89 1606 aa16■□□□□ 0.15
USP4-214ENST00000491791 PTPRGP23470 1445 aa15.99■□□□□ 0.15
USP4-214ENST00000491791 CARMIL2Q6F5E8 1435 aa15.99■□□□□ 0.15
USP4-214ENST00000491791 DISP1Q96F81 1524 aa15.97■□□□□ 0.15
USP4-214ENST00000491791 KIAA0556O60303 1618 aa15.96■□□□□ 0.15
USP4-214ENST00000491791 FGD6Q6ZV73 1430 aa15.95■□□□□ 0.14
USP4-214ENST00000491791 SUPT6HQ7KZ85 1726 aaKnown RBP15.94■□□□□ 0.14
USP4-214ENST00000491791 KDM6BO15054 1643 aa15.94■□□□□ 0.14
USP4-214ENST00000491791 MTUS2Q5JR59 1369 aa15.93■□□□□ 0.14
USP4-214ENST00000491791 EPRSP07814 1512 aaKnown RBP15.93■□□□□ 0.14
USP4-214ENST00000491791 SETD5Q9C0A6 1442 aa15.93■□□□□ 0.14
USP4-214ENST00000491791 NCOA2Q15596 1464 aa15.92■□□□□ 0.14
USP4-214ENST00000491791 MYOM3Q5VTT5 1437 aa15.91■□□□□ 0.14
USP4-214ENST00000491791 ABCC2Q92887 1545 aa15.9■□□□□ 0.14
USP4-214ENST00000491791 TSPOAP1O95153 1857 aa15.9■□□□□ 0.14
USP4-214ENST00000491791 MAGI3Q5TCQ9 1506 aa15.89■□□□□ 0.13
USP4-214ENST00000491791 TCOF1Q13428 1488 aaKnown RBP15.89■□□□□ 0.13
USP4-214ENST00000491791 PLB1Q6P1J6 1458 aa15.88■□□□□ 0.13
USP4-214ENST00000491791 RAB3GAP2Q9H2M9 1393 aa15.87■□□□□ 0.13
USP4-214ENST00000491791 ASXL2Q76L83 1435 aa15.86■□□□□ 0.13
USP4-214ENST00000491791 MIA2Q96PC5 1412 aa15.86■□□□□ 0.13
USP4-214ENST00000491791 ATP1B4Q9UN42 357 aaPredicted RBP15.86■□□□□ 0.13
USP4-214ENST00000491791 UACAQ9BZF9 1416 aa15.85■□□□□ 0.13
USP4-214ENST00000491791 UHRF1BP1LA0JNW5 1464 aa15.85■□□□□ 0.13
USP4-214ENST00000491791 RAPGEF6Q8TEU7 1601 aa15.84■□□□□ 0.13
USP4-214ENST00000491791 NUP153P49790 1475 aaKnown RBP15.83■□□□□ 0.12
USP4-214ENST00000491791 ZNF316A6NFI3 1004 aaPredicted RBP15.82■□□□□ 0.12
USP4-214ENST00000491791 AKNAQ7Z591 1439 aa15.82■□□□□ 0.12
USP4-214ENST00000491791 GLI2P10070 1586 aa15.82■□□□□ 0.12
USP4-214ENST00000491791 KDM4FA0A1W2PPD8 638 aa15.81■□□□□ 0.12
USP4-214ENST00000491791 HFM1A2PYH4 1435 aa15.81■□□□□ 0.12
USP4-214ENST00000491791 PTPN23Q9H3S7 1636 aa15.81■□□□□ 0.12
USP4-214ENST00000491791 FAM50AQ14320 339 aaKnown RBP15.8■□□□□ 0.12
USP4-214ENST00000491791 CDK13Q14004 1512 aaKnown RBP15.78■□□□□ 0.12
USP4-214ENST00000491791 TIMELESSQ9UNS1 1208 aa15.78■□□□□ 0.12
USP4-214ENST00000491791 KDM5BQ9UGL1 1544 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms