RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 KIF21AQ7Z4S6 1674 aa11.32□□□□□ -0.6
SYNE1-229ENST00000490866 SOGA1O94964 1423 aa11.32□□□□□ -0.6
SYNE1-229ENST00000490866 KIF27Q86VH2 1401 aa11.32□□□□□ -0.6
SYNE1-229ENST00000490866 WDR62O43379 1518 aa11.3□□□□□ -0.6
SYNE1-229ENST00000490866 URB2Q14146 1524 aaKnown RBP11.3□□□□□ -0.6
SYNE1-229ENST00000490866 FGD5Q6ZNL6 1462 aa11.29□□□□□ -0.6
SYNE1-229ENST00000490866 WDR97A6NE52 1622 aa11.27□□□□□ -0.6
SYNE1-229ENST00000490866 IFT140Q96RY7 1462 aa11.27□□□□□ -0.6
SYNE1-229ENST00000490866 ABCA10Q8WWZ4 1543 aa11.27□□□□□ -0.61
SYNE1-229ENST00000490866 POLA1P09884 1462 aaPredicted RBP11.26□□□□□ -0.61
SYNE1-229ENST00000490866 RBM42Q9BTD8 480 aaKnown RBP11.23□□□□□ -0.61
SYNE1-229ENST00000490866 THOC2Q8NI27 1593 aaKnown RBP11.21□□□□□ -0.61
SYNE1-229ENST00000490866 CUX2O14529 1486 aa11.21□□□□□ -0.61
SYNE1-229ENST00000490866 FBLN2P98095 1184 aa11.2□□□□□ -0.62
SYNE1-229ENST00000490866 IGF1RP08069 1367 aa11.18□□□□□ -0.62
SYNE1-229ENST00000490866 FAM9AQ8IZU1 332 aaPredicted RBP11.17□□□□□ -0.62
SYNE1-229ENST00000490866 ERICH3Q5RHP9 1530 aa11.17□□□□□ -0.62
SYNE1-229ENST00000490866 GAPVD1Q14C86 1478 aa11.17□□□□□ -0.62
SYNE1-229ENST00000490866 TARBP1Q13395 1621 aaKnown RBP11.17□□□□□ -0.62
SYNE1-229ENST00000490866 RAD54L2Q9Y4B4 1467 aa11.16□□□□□ -0.62
SYNE1-229ENST00000490866 CARMIL1Q5VZK9 1371 aa11.14□□□□□ -0.63
SYNE1-229ENST00000490866 TDRD9Q8NDG6 1382 aaKnown RBP11.14□□□□□ -0.63
SYNE1-229ENST00000490866 GRIN2BQ13224 1484 aa11.13□□□□□ -0.63
SYNE1-229ENST00000490866 KIF21BO75037 1637 aa11.13□□□□□ -0.63
SYNE1-229ENST00000490866 GOLGA3Q08378 1498 aa11.12□□□□□ -0.63
SYNE1-229ENST00000490866 PRXQ9BXM0 1461 aa11.12□□□□□ -0.63
SYNE1-229ENST00000490866 CUL7Q14999 1698 aa11.12□□□□□ -0.63
SYNE1-229ENST00000490866 UBTFP17480 764 aaKnown RBP11.12□□□□□ -0.63
SYNE1-229ENST00000490866 RAPGEF2Q9Y4G8 1499 aa11.12□□□□□ -0.63
SYNE1-229ENST00000490866 TNIKQ9UKE5 1360 aa11.11□□□□□ -0.63
SYNE1-229ENST00000490866 RUSC2Q8N2Y8 1516 aa11.1□□□□□ -0.63
SYNE1-229ENST00000490866 ABCA5Q8WWZ7 1642 aa11.1□□□□□ -0.63
SYNE1-229ENST00000490866 FHAD1B1AJZ9 1412 aa11.09□□□□□ -0.63
SYNE1-229ENST00000490866 MAGI1Q96QZ7 1491 aaPredicted RBP11.09□□□□□ -0.63
SYNE1-229ENST00000490866 AQRO60306 1485 aaKnown RBP eCLIP11.07□□□□□ -0.64
SYNE1-229ENST00000490866 LOC105371045A0A1W2PR82 267 aa11.06□□□□□ -0.64
SYNE1-229ENST00000490866 CHMP7Q8WUX9 453 aaPredicted RBP11.06□□□□□ -0.64
SYNE1-229ENST00000490866 MKRN4PQ13434 485 aaPredicted RBP11.03□□□□□ -0.64
SYNE1-229ENST00000490866 ZNF608Q9ULD9 1512 aaPredicted RBP11.03□□□□□ -0.64
SYNE1-229ENST00000490866 OSCARQ8IYS5 282 aa11.02□□□□□ -0.65
SYNE1-229ENST00000490866 AKT1S1Q96B36 256 aa11.02□□□□□ -0.65
SYNE1-229ENST00000490866 SYNJ2O15056 1496 aa11.01□□□□□ -0.65
SYNE1-229ENST00000490866 SPDYE2BA6NHP3 402 aa11.01□□□□□ -0.65
SYNE1-229ENST00000490866 SPDYE6P0CI01 402 aa11.01□□□□□ -0.65
SYNE1-229ENST00000490866 SPDYE2Q495Y8 402 aa11.01□□□□□ -0.65
SYNE1-229ENST00000490866 EIF4G3O43432 1585 aaKnown RBP11.01□□□□□ -0.65
SYNE1-229ENST00000490866 PBRM1Q86U86 1689 aa11.01□□□□□ -0.65
SYNE1-229ENST00000490866 ADAMTS12P58397 1594 aa10.96□□□□□ -0.65
SYNE1-229ENST00000490866 SNAPC4Q5SXM2 1469 aa10.96□□□□□ -0.65
SYNE1-229ENST00000490866 KIAA0586Q9BVV6 1533 aa10.94□□□□□ -0.66
SYNE1-229ENST00000490866 GRIN2AQ12879 1464 aa10.94□□□□□ -0.66
SYNE1-229ENST00000490866 CEP162Q5TB80 1403 aa10.92□□□□□ -0.66
SYNE1-229ENST00000490866 CLIP1P30622 1438 aa10.92□□□□□ -0.66
SYNE1-229ENST00000490866 EFCAB5A4FU69 1503 aa10.9□□□□□ -0.66
SYNE1-229ENST00000490866 JPH4Q96JJ6 628 aa10.89□□□□□ -0.67
SYNE1-229ENST00000490866 ZNF692Q9BU19 519 aaPredicted RBP10.89□□□□□ -0.67
SYNE1-229ENST00000490866 NUP160Q12769 1436 aa10.89□□□□□ -0.67
SYNE1-229ENST00000490866 CARMIL2Q6F5E8 1435 aa10.89□□□□□ -0.67
SYNE1-229ENST00000490866 CTTNBP2Q8WZ74 1663 aa10.89□□□□□ -0.67
SYNE1-229ENST00000490866 IQGAP2Q13576 1575 aa10.86□□□□□ -0.67
SYNE1-229ENST00000490866 FMN1Q68DA7 1419 aa10.86□□□□□ -0.67
SYNE1-229ENST00000490866 SSUH2Q9Y2M2 353 aa10.86□□□□□ -0.67
SYNE1-229ENST00000490866 REM2Q8IYK8 340 aaPredicted RBP10.85□□□□□ -0.67
SYNE1-229ENST00000490866 UGGT2Q9NYU1 1516 aa10.84□□□□□ -0.67
SYNE1-229ENST00000490866 VPS8Q8N3P4 1428 aa10.81□□□□□ -0.68
SYNE1-229ENST00000490866 ARHGAP35Q9NRY4 1499 aa10.8□□□□□ -0.68
SYNE1-229ENST00000490866 RANGAP1P46060 587 aaPredicted RBP10.79□□□□□ -0.68
SYNE1-229ENST00000490866 CEP170Q5SW79 1584 aa10.78□□□□□ -0.68
SYNE1-229ENST00000490866 CHD1O14646 1710 aa10.78□□□□□ -0.68
SYNE1-229ENST00000490866 SAMD9Q5K651 1589 aa10.77□□□□□ -0.68
SYNE1-229ENST00000490866 CHRDL2Q6WN34 429 aa10.77□□□□□ -0.69
SYNE1-229ENST00000490866 CDK11AQ9UQ88 783 aaPredicted RBP10.77□□□□□ -0.69
SYNE1-229ENST00000490866 MAP3K1Q13233 1512 aa10.76□□□□□ -0.69
SYNE1-229ENST00000490866 CASKIN1Q8WXD9 1431 aa10.75□□□□□ -0.69
SYNE1-229ENST00000490866 SPDYE1Q8NFV5 336 aaPredicted RBP10.74□□□□□ -0.69
SYNE1-229ENST00000490866 PRG4Q92954 1404 aaPredicted RBP10.74□□□□□ -0.69
SYNE1-229ENST00000490866 ARAP1Q96P48 1450 aa10.74□□□□□ -0.69
SYNE1-229ENST00000490866 SPDYE4A6NLX3 237 aa10.73□□□□□ -0.69
SYNE1-229ENST00000490866 PTPRGP23470 1445 aa10.73□□□□□ -0.69
SYNE1-229ENST00000490866 CLASP1Q7Z460 1538 aa10.73□□□□□ -0.69
SYNE1-229ENST00000490866 SHROOM2Q13796 1616 aa10.73□□□□□ -0.69
SYNE1-229ENST00000490866 P3H3Q8IVL6 736 aa10.72□□□□□ -0.69
SYNE1-229ENST00000490866 FYCO1Q9BQS8 1478 aa10.72□□□□□ -0.69
SYNE1-229ENST00000490866 DISP1Q96F81 1524 aa10.72□□□□□ -0.69
SYNE1-229ENST00000490866 KIAA0556O60303 1618 aa10.71□□□□□ -0.69
SYNE1-229ENST00000490866 CCDC18Q5T9S5 1454 aa10.7□□□□□ -0.7
SYNE1-229ENST00000490866 PITPNM1O00562 1244 aa10.69□□□□□ -0.7
SYNE1-229ENST00000490866 FHOD3Q2V2M9 1422 aa10.68□□□□□ -0.7
SYNE1-229ENST00000490866 POTEHQ6S545 545 aa10.68□□□□□ -0.7
SYNE1-229ENST00000490866 ATP1B4Q9UN42 357 aaPredicted RBP10.68□□□□□ -0.7
SYNE1-229ENST00000490866 NPM1P06748 294 aaKnown RBP eCLIP10.66□□□□□ -0.7
SYNE1-229ENST00000490866 PLEKHD1A6NEE1 506 aa10.65□□□□□ -0.7
SYNE1-229ENST00000490866 TRIM26Q12899 539 aaPredicted RBP10.65□□□□□ -0.7
SYNE1-229ENST00000490866 UACAQ9BZF9 1416 aa10.65□□□□□ -0.7
SYNE1-229ENST00000490866 HECW1Q76N89 1606 aa10.65□□□□□ -0.7
SYNE1-229ENST00000490866 UHRF1BP1LA0JNW5 1464 aa10.63□□□□□ -0.71
SYNE1-229ENST00000490866 STAG3Q9UJ98 1225 aa10.62□□□□□ -0.71
SYNE1-229ENST00000490866 RAPGEF6Q8TEU7 1601 aa10.62□□□□□ -0.71
SYNE1-229ENST00000490866 MTUS2Q5JR59 1369 aa10.61□□□□□ -0.71
SYNE1-229ENST00000490866 EPRSP07814 1512 aaKnown RBP10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms