RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 EIF4G3O43432 1585 aaKnown RBP17.11■□□□□ 0.33
SKA1-204ENST00000488454 FOXD4L1Q9NU39 408 aa17.11■□□□□ 0.33
SKA1-204ENST00000488454 FBLN2P98095 1184 aa17.07■□□□□ 0.32
SKA1-204ENST00000488454 ZBTB22O15209 634 aa17.06■□□□□ 0.32
SKA1-204ENST00000488454 ABCA5Q8WWZ7 1642 aa17.06■□□□□ 0.32
SKA1-204ENST00000488454 CHMP7Q8WUX9 453 aaPredicted RBP17.05■□□□□ 0.32
SKA1-204ENST00000488454 IGF1RP08069 1367 aa17.04■□□□□ 0.32
SKA1-204ENST00000488454 FAM9AQ8IZU1 332 aaPredicted RBP17.03■□□□□ 0.32
SKA1-204ENST00000488454 SNAPC4Q5SXM2 1469 aa17.03■□□□□ 0.32
SKA1-204ENST00000488454 ERICH3Q5RHP9 1530 aa17.02■□□□□ 0.32
SKA1-204ENST00000488454 MAGI1Q96QZ7 1491 aaPredicted RBP17.02■□□□□ 0.32
SKA1-204ENST00000488454 RUSC2Q8N2Y8 1516 aa17.01■□□□□ 0.31
SKA1-204ENST00000488454 CSRNP3Q8WYN3 585 aa17.01■□□□□ 0.31
SKA1-204ENST00000488454 EEA1Q15075 1411 aa17.01■□□□□ 0.31
SKA1-204ENST00000488454 FHAD1B1AJZ9 1412 aa16.98■□□□□ 0.31
SKA1-204ENST00000488454 MYCNP04198 464 aaPredicted RBP16.98■□□□□ 0.31
SKA1-204ENST00000488454 PBRM1Q86U86 1689 aa16.97■□□□□ 0.31
SKA1-204ENST00000488454 CARMIL1Q5VZK9 1371 aa16.97■□□□□ 0.31
SKA1-204ENST00000488454 OSCARQ8IYS5 282 aa16.96■□□□□ 0.31
SKA1-204ENST00000488454 SYNJ2O15056 1496 aa16.95■□□□□ 0.3
SKA1-204ENST00000488454 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.92■□□□□ 0.3
SKA1-204ENST00000488454 HNRNPUL2Q1KMD3 747 aaKnown RBP16.92■□□□□ 0.3
SKA1-204ENST00000488454 ADAMTS12P58397 1594 aa16.89■□□□□ 0.3
SKA1-204ENST00000488454 CUL7Q14999 1698 aa16.89■□□□□ 0.29
SKA1-204ENST00000488454 GRIN2AQ12879 1464 aa16.86■□□□□ 0.29
SKA1-204ENST00000488454 RAPGEF2Q9Y4G8 1499 aa16.86■□□□□ 0.29
SKA1-204ENST00000488454 SAMD1Q6SPF0 538 aaPredicted RBP16.86■□□□□ 0.29
SKA1-204ENST00000488454 SPINK5Q9NQ38 1064 aaPredicted RBP16.84■□□□□ 0.29
SKA1-204ENST00000488454 PRXQ9BXM0 1461 aa16.84■□□□□ 0.29
SKA1-204ENST00000488454 EHMT2Q96KQ7 1210 aa16.83■□□□□ 0.28
SKA1-204ENST00000488454 CHD1O14646 1710 aa16.82■□□□□ 0.28
SKA1-204ENST00000488454 APLP2Q06481 763 aa16.79■□□□□ 0.28
SKA1-204ENST00000488454 CAPN15O75808 1086 aa16.77■□□□□ 0.28
SKA1-204ENST00000488454 UBTFP17480 764 aaKnown RBP16.77■□□□□ 0.28
SKA1-204ENST00000488454 NUP160Q12769 1436 aa16.77■□□□□ 0.27
SKA1-204ENST00000488454 JPH4Q96JJ6 628 aa16.73■□□□□ 0.27
SKA1-204ENST00000488454 CEP170Q5SW79 1584 aa16.72■□□□□ 0.27
SKA1-204ENST00000488454 KIAA0586Q9BVV6 1533 aa16.71■□□□□ 0.27
SKA1-204ENST00000488454 KIF21BO75037 1637 aa16.71■□□□□ 0.27
SKA1-204ENST00000488454 GOLGA3Q08378 1498 aa16.71■□□□□ 0.27
SKA1-204ENST00000488454 CLASP1Q7Z460 1538 aa16.68■□□□□ 0.26
SKA1-204ENST00000488454 LOC105371045A0A1W2PR82 267 aa16.64■□□□□ 0.25
SKA1-204ENST00000488454 RANGAP1P46060 587 aaPredicted RBP16.64■□□□□ 0.25
SKA1-204ENST00000488454 TRHP20396 242 aaPredicted RBP16.63■□□□□ 0.25
SKA1-204ENST00000488454 ZNF219Q9P2Y4 722 aaPredicted RBP16.62■□□□□ 0.25
SKA1-204ENST00000488454 PRG4Q92954 1404 aaPredicted RBP16.62■□□□□ 0.25
SKA1-204ENST00000488454 IQGAP2Q13576 1575 aa16.61■□□□□ 0.25
SKA1-204ENST00000488454 CARMIL2Q6F5E8 1435 aa16.59■□□□□ 0.25
SKA1-204ENST00000488454 TNIKQ9UKE5 1360 aa16.58■□□□□ 0.24
SKA1-204ENST00000488454 ATF5Q9Y2D1 282 aaPredicted RBP16.57■□□□□ 0.24
SKA1-204ENST00000488454 CTTNBP2Q8WZ74 1663 aa16.56■□□□□ 0.24
SKA1-204ENST00000488454 DSG3P32926 999 aa16.55■□□□□ 0.24
SKA1-204ENST00000488454 P3H3Q8IVL6 736 aa16.54■□□□□ 0.24
SKA1-204ENST00000488454 SHROOM2Q13796 1616 aa16.54■□□□□ 0.24
SKA1-204ENST00000488454 ARHGEF11O15085 1522 aa16.54■□□□□ 0.24
SKA1-204ENST00000488454 UGGT2Q9NYU1 1516 aa16.54■□□□□ 0.24
SKA1-204ENST00000488454 TTBK1Q5TCY1 1321 aaPredicted RBP16.53■□□□□ 0.24
SKA1-204ENST00000488454 ATXN8OSP0DMR3 200 aa16.53■□□□□ 0.24
SKA1-204ENST00000488454 CYB5RLQ6IPT4 315 aa16.52■□□□□ 0.24
SKA1-204ENST00000488454 RIMBP3CA6NJZ7 1639 aa16.48■□□□□ 0.23
SKA1-204ENST00000488454 RIMBP3BA6NNM3 1639 aa16.48■□□□□ 0.23
SKA1-204ENST00000488454 RIMBP3Q9UFD9 1639 aa16.48■□□□□ 0.23
SKA1-204ENST00000488454 PTPRGP23470 1445 aa16.48■□□□□ 0.23
SKA1-204ENST00000488454 DISP1Q96F81 1524 aa16.48■□□□□ 0.23
SKA1-204ENST00000488454 ERCC6L2Q5T890 1561 aa16.47■□□□□ 0.23
SKA1-204ENST00000488454 ABCB7O75027 752 aa16.44■□□□□ 0.22
SKA1-204ENST00000488454 CLIP1P30622 1438 aa16.44■□□□□ 0.22
SKA1-204ENST00000488454 KIAA0556O60303 1618 aa16.43■□□□□ 0.22
SKA1-204ENST00000488454 EFCAB5A4FU69 1503 aa16.43■□□□□ 0.22
SKA1-204ENST00000488454 ARAP1Q96P48 1450 aa16.42■□□□□ 0.22
SKA1-204ENST00000488454 CEP162Q5TB80 1403 aa16.41■□□□□ 0.22
SKA1-204ENST00000488454 SAMD9Q5K651 1589 aa16.39■□□□□ 0.21
SKA1-204ENST00000488454 FHOD3Q2V2M9 1422 aa16.39■□□□□ 0.21
SKA1-204ENST00000488454 ARHGAP35Q9NRY4 1499 aa16.39■□□□□ 0.21
SKA1-204ENST00000488454 NPM1P06748 294 aaKnown RBP eCLIP16.38■□□□□ 0.21
SKA1-204ENST00000488454 ATP1B4Q9UN42 357 aaPredicted RBP16.35■□□□□ 0.21
SKA1-204ENST00000488454 UACAQ9BZF9 1416 aa16.35■□□□□ 0.21
SKA1-204ENST00000488454 FMN1Q68DA7 1419 aa16.34■□□□□ 0.21
SKA1-204ENST00000488454 POLA2Q14181 598 aa16.31■□□□□ 0.2
SKA1-204ENST00000488454 PLB1Q6P1J6 1458 aa16.3■□□□□ 0.2
SKA1-204ENST00000488454 UHRF1BP1LA0JNW5 1464 aa16.28■□□□□ 0.2
SKA1-204ENST00000488454 ARID3CA6NKF2 412 aa16.26■□□□□ 0.19
SKA1-204ENST00000488454 ABCC2Q92887 1545 aa16.25■□□□□ 0.19
SKA1-204ENST00000488454 ABCA8O94911 1581 aa16.24■□□□□ 0.19
SKA1-204ENST00000488454 RAPGEF6Q8TEU7 1601 aa16.22■□□□□ 0.19
SKA1-204ENST00000488454 ADCY10Q96PN6 1610 aa16.22■□□□□ 0.19
SKA1-204ENST00000488454 CASKIN1Q8WXD9 1431 aa16.21■□□□□ 0.19
SKA1-204ENST00000488454 VPS8Q8N3P4 1428 aa16.19■□□□□ 0.18
SKA1-204ENST00000488454 CDK11AQ9UQ88 783 aaPredicted RBP16.19■□□□□ 0.18
SKA1-204ENST00000488454 KDM5BQ9UGL1 1544 aa16.19■□□□□ 0.18
SKA1-204ENST00000488454 PLEKHD1A6NEE1 506 aa16.18■□□□□ 0.18
SKA1-204ENST00000488454 ATP10BO94823 1461 aa16.17■□□□□ 0.18
SKA1-204ENST00000488454 NUP153P49790 1475 aaKnown RBP16.17■□□□□ 0.18
SKA1-204ENST00000488454 FYCO1Q9BQS8 1478 aa16.16■□□□□ 0.18
SKA1-204ENST00000488454 HECW1Q76N89 1606 aa16.15■□□□□ 0.18
SKA1-204ENST00000488454 EPRSP07814 1512 aaKnown RBP16.13■□□□□ 0.17
SKA1-204ENST00000488454 PCF11O94913 1555 aaKnown RBP16.13■□□□□ 0.17
SKA1-204ENST00000488454 ASXL2Q76L83 1435 aa16.12■□□□□ 0.17
SKA1-204ENST00000488454 CCDC18Q5T9S5 1454 aa16.12■□□□□ 0.17
SKA1-204ENST00000488454 KCNH8Q96L42 1107 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms