RNA–Protein interactions for RNA: ENST00000483876.1

COL17A1-206, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 622 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-206ENST00000483876 TOP2BQ02880 1626 aa9.11□□□□□ -0.95
COL17A1-206ENST00000483876 TOP2AP11388 1531 aaKnown RBP9.1□□□□□ -0.95
COL17A1-206ENST00000483876 WDR97A6NE52 1622 aa9.1□□□□□ -0.95
COL17A1-206ENST00000483876 COL17A1Q9UMD9 1497 aaPredicted RBP9.05□□□□□ -0.96
COL17A1-206ENST00000483876 CCDC88BA6NC98 1476 aa9.03□□□□□ -0.96
COL17A1-206ENST00000483876 PRG4Q92954 1404 aaPredicted RBP9.03□□□□□ -0.96
COL17A1-206ENST00000483876 SHROOM2Q13796 1616 aa9.02□□□□□ -0.96
COL17A1-206ENST00000483876 NUP160Q12769 1436 aa9.01□□□□□ -0.97
COL17A1-206ENST00000483876 GRIN2AQ12879 1464 aa9.01□□□□□ -0.97
COL17A1-206ENST00000483876 PCF11O94913 1555 aaKnown RBP9□□□□□ -0.97
COL17A1-206ENST00000483876 PTPRMP28827 1452 aa8.98□□□□□ -0.97
COL17A1-206ENST00000483876 FGD5Q6ZNL6 1462 aa8.98□□□□□ -0.97
COL17A1-206ENST00000483876 ADCY10Q96PN6 1610 aa8.98□□□□□ -0.97
COL17A1-206ENST00000483876 HSPA2P54652 639 aa8.97□□□□□ -0.97
COL17A1-206ENST00000483876 JPH4Q96JJ6 628 aa8.96□□□□□ -0.98
COL17A1-206ENST00000483876 PPRC1Q5VV67 1664 aaKnown RBP8.96□□□□□ -0.98
COL17A1-206ENST00000483876 PBRM1Q86U86 1689 aa8.96□□□□□ -0.98
COL17A1-206ENST00000483876 GLI2P10070 1586 aa8.92□□□□□ -0.98
COL17A1-206ENST00000483876 TEX14Q8IWB6 1497 aa8.92□□□□□ -0.98
COL17A1-206ENST00000483876 PLB1Q6P1J6 1458 aa8.89□□□□□ -0.99
COL17A1-206ENST00000483876 ASXL2Q76L83 1435 aa8.88□□□□□ -0.99
COL17A1-206ENST00000483876 KIF21BO75037 1637 aa8.87□□□□□ -0.99
COL17A1-206ENST00000483876 ABCA5Q8WWZ7 1642 aa8.86□□□□□ -0.99
COL17A1-206ENST00000483876 ADAMTS12P58397 1594 aa8.86□□□□□ -0.99
COL17A1-206ENST00000483876 FHAD1B1AJZ9 1412 aa8.85□□□□□ -0.99
COL17A1-206ENST00000483876 ADAMTSL3P82987 1691 aa8.85□□□□□ -0.99
COL17A1-206ENST00000483876 MAP3K4Q9Y6R4 1608 aa8.83□□□□□ -1
COL17A1-206ENST00000483876 EPRSP07814 1512 aaKnown RBP8.82□□□□□ -1
COL17A1-206ENST00000483876 CUX1P39880 1505 aa8.82□□□□□ -1
COL17A1-206ENST00000483876 ABCA10Q8WWZ4 1543 aa8.82□□□□□ -1
COL17A1-206ENST00000483876 DMRT2Q9Y5R5 561 aa8.82□□□□□ -1
COL17A1-206ENST00000483876 ABCC2Q92887 1545 aa8.81□□□□□ -1
COL17A1-206ENST00000483876 PLPPR3Q6T4P5 718 aa8.81□□□□□ -1
COL17A1-206ENST00000483876 PHF23Q9BUL5 403 aaPredicted RBP8.8□□□□□ -1
COL17A1-206ENST00000483876 KIAA0586Q9BVV6 1533 aa8.8□□□□□ -1
COL17A1-206ENST00000483876 WRNQ14191 1432 aaPredicted RBP eCLIP8.8□□□□□ -1
COL17A1-206ENST00000483876 TTBK1Q5TCY1 1321 aaPredicted RBP8.8□□□□□ -1
COL17A1-206ENST00000483876 ARID4BQ4LE39 1312 aaPredicted RBP8.79□□□□□ -1
COL17A1-206ENST00000483876 MED1Q15648 1581 aaPredicted RBP8.78□□□□□ -1
COL17A1-206ENST00000483876 MADDQ8WXG6 1647 aa8.78□□□□□ -1
COL17A1-206ENST00000483876 PTPRGP23470 1445 aa8.78□□□□□ -1
COL17A1-206ENST00000483876 EEA1Q15075 1411 aa8.77□□□□□ -1.01
COL17A1-206ENST00000483876 YEATS2Q9ULM3 1422 aa8.76□□□□□ -1.01
COL17A1-206ENST00000483876 IQSEC2Q5JU85 1478 aa8.76□□□□□ -1.01
COL17A1-206ENST00000483876 RUSC2Q8N2Y8 1516 aa8.75□□□□□ -1.01
COL17A1-206ENST00000483876 LOC105371045A0A1W2PR82 267 aa8.75□□□□□ -1.01
COL17A1-206ENST00000483876 UBAP1LF5GYI3 381 aa8.75□□□□□ -1.01
COL17A1-206ENST00000483876 BCORL1Q5H9F3 1711 aa8.73□□□□□ -1.01
COL17A1-206ENST00000483876 CUL7Q14999 1698 aa8.72□□□□□ -1.01
COL17A1-206ENST00000483876 RIMS1Q86UR5 1692 aaKnown RBP8.72□□□□□ -1.01
COL17A1-206ENST00000483876 CD109Q6YHK3 1445 aa8.71□□□□□ -1.01
COL17A1-206ENST00000483876 MAGI3Q5TCQ9 1506 aa8.71□□□□□ -1.01
COL17A1-206ENST00000483876 CSRNP3Q8WYN3 585 aa8.71□□□□□ -1.02
COL17A1-206ENST00000483876 LTBP4Q8N2S1 1624 aa8.7□□□□□ -1.02
COL17A1-206ENST00000483876 FAM9AQ8IZU1 332 aaPredicted RBP8.7□□□□□ -1.02
COL17A1-206ENST00000483876 HSPA1LP34931 641 aa8.69□□□□□ -1.02
COL17A1-206ENST00000483876 UHRF1BP1LA0JNW5 1464 aa8.69□□□□□ -1.02
COL17A1-206ENST00000483876 ERICH3Q5RHP9 1530 aa8.69□□□□□ -1.02
COL17A1-206ENST00000483876 TNIKQ9UKE5 1360 aa8.68□□□□□ -1.02
COL17A1-206ENST00000483876 PTPRTO14522 1441 aa8.68□□□□□ -1.02
COL17A1-206ENST00000483876 BIVM-ERCC5R4GMW8 1640 aa8.68□□□□□ -1.02
COL17A1-206ENST00000483876 ARAP3Q8WWN8 1544 aa8.67□□□□□ -1.02
COL17A1-206ENST00000483876 UACAQ9BZF9 1416 aa8.67□□□□□ -1.02
COL17A1-206ENST00000483876 KDM5BQ9UGL1 1544 aa8.66□□□□□ -1.02
COL17A1-206ENST00000483876 SCAF1Q9H7N4 1312 aaKnown RBP8.65□□□□□ -1.02
COL17A1-206ENST00000483876 STRCQ7RTU9 1775 aa8.65□□□□□ -1.02
COL17A1-206ENST00000483876 CFAP43Q8NDM7 1665 aa8.65□□□□□ -1.03
COL17A1-206ENST00000483876 WDR7Q9Y4E6 1490 aa8.64□□□□□ -1.03
COL17A1-206ENST00000483876 RAPGEF3O95398 923 aa8.64□□□□□ -1.03
COL17A1-206ENST00000483876 KCNH8Q96L42 1107 aa8.64□□□□□ -1.03
COL17A1-206ENST00000483876 SENP3Q9H4L4 574 aaPredicted RBP8.64□□□□□ -1.03
COL17A1-206ENST00000483876 CARMIL2Q6F5E8 1435 aa8.63□□□□□ -1.03
COL17A1-206ENST00000483876 PIP4K2BP78356 416 aa8.62□□□□□ -1.03
COL17A1-206ENST00000483876 POGZQ7Z3K3 1410 aa8.61□□□□□ -1.03
COL17A1-206ENST00000483876 ZCCHC11Q5TAX3 1644 aaKnown RBP8.61□□□□□ -1.03
COL17A1-206ENST00000483876 KIF27Q86VH2 1401 aa8.6□□□□□ -1.03
COL17A1-206ENST00000483876 PREX1Q8TCU6 1659 aa8.59□□□□□ -1.03
COL17A1-206ENST00000483876 MLECQ14165 292 aa8.59□□□□□ -1.03
COL17A1-206ENST00000483876 RGS17Q9UGC6 210 aaPredicted RBP8.59□□□□□ -1.03
COL17A1-206ENST00000483876 UHRF1BP1Q6BDS2 1440 aa8.59□□□□□ -1.03
COL17A1-206ENST00000483876 PHLDB1Q86UU1 1377 aa8.58□□□□□ -1.04
COL17A1-206ENST00000483876 GOLGA3Q08378 1498 aa8.57□□□□□ -1.04
COL17A1-206ENST00000483876 CEBPAP49715 358 aaPredicted RBP8.57□□□□□ -1.04
COL17A1-206ENST00000483876 ZNF335Q9H4Z2 1342 aaPredicted RBP8.56□□□□□ -1.04
COL17A1-206ENST00000483876 FANCAO15360 1455 aa8.56□□□□□ -1.04
COL17A1-206ENST00000483876 TTC37Q6PGP7 1564 aa8.56□□□□□ -1.04
COL17A1-206ENST00000483876 TOM1O60784 492 aa8.55□□□□□ -1.04
COL17A1-206ENST00000483876 UBTFP17480 764 aaKnown RBP8.55□□□□□ -1.04
COL17A1-206ENST00000483876 PRXQ9BXM0 1461 aa8.55□□□□□ -1.04
COL17A1-206ENST00000483876 IGF1RP08069 1367 aa8.54□□□□□ -1.04
COL17A1-206ENST00000483876 POTEAQ6S8J7 498 aa8.52□□□□□ -1.05
COL17A1-206ENST00000483876 ARHGEF40Q8TER5 1519 aa8.52□□□□□ -1.05
COL17A1-206ENST00000483876 AKNAQ7Z591 1439 aa8.51□□□□□ -1.05
COL17A1-206ENST00000483876 FRMPD1Q5SYB0 1578 aa8.51□□□□□ -1.05
COL17A1-206ENST00000483876 NCOA1Q15788 1441 aa8.5□□□□□ -1.05
COL17A1-206ENST00000483876 CEP162Q5TB80 1403 aa8.5□□□□□ -1.05
COL17A1-206ENST00000483876 FER1L4A9Z1Z3 1794 aa8.5□□□□□ -1.05
COL17A1-206ENST00000483876 RAPGEF2Q9Y4G8 1499 aa8.5□□□□□ -1.05
COL17A1-206ENST00000483876 UPF1Q92900 1129 aaKnown RBP eCLIP8.49□□□□□ -1.05
COL17A1-206ENST00000483876 EHMT2Q96KQ7 1210 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms